FC869225

Overview
NameFC869225
Unique NameFC869225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_HELAH (Porphobilinogen deaminase OS=Helicobacter acinonychis (strain Sheeba) GN=hemC PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.168e-24
Identity = 67/132 (50.76%), Postives = 82/132 (62.12%), Query Frame = 3 
Query:  339 IGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRSLK 734
            IG+RGS LAL QA+  + +L     E   E  IQIV  KTTGDKIL  PL  IGGKGLFTKE++E L+   ID+AVHS+KDVP    +   L C  +R DVRD F+          P G+ VGT SLRRS++
Sbjct:    6 IGSRGSELALWQANYIKERLKK---ECFIESEIQIV--KTTGDKILDAPLNKIGGKGLFTKELEELLLKGTIDLAVHSLKDVPVVFEKGLDLACITKRADVRDTFLSTKFPDLMSLPKGAKVGTTSLRRSMQ 132
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_EHRCR (Porphobilinogen deaminase OS=Ehrlichia chaffeensis (strain Arkansas) GN=hemC PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.168e-24
Identity = 62/134 (46.27%), Postives = 85/134 (63.43%), Query Frame = 3 
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRSLK 734
            IRIGTRGS LA+AQ  E +N L    PE++    +QIV IKT+GD     PL+ IGGK LF KEI+EAL+  ++D+AVHS+KD+P +  E  I+PC L+R    D FI          P  + +GT+S+RR ++
Sbjct:    3 IRIGTRGSILAIAQTLEIKNLLNRYFPEIS----VQIVKIKTSGDINNQVPLSAIGGKSLFIKEIEEALLMGKVDLAVHSVKDIPAFYCEGLIIPCVLKRNSPYDVFISSKHKDIKSLPLNATIGTSSVRRKVQ 132
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_CHLT3 (Porphobilinogen deaminase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=hemC PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.168e-24
Identity = 66/135 (48.89%), Postives = 85/135 (62.96%), Query Frame = 3 
Query:  321 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            K A+I IGTR SPLAL QA   + +L   +P L     I +  IKTTGDKIL  PLA IG KGLFT+EI+  ++ ++ID+AVHS+KD+PT  PE  ++    +RED RD  I          P G+IV T+SLRR
Sbjct:    2 KKALI-IGTRSSPLALWQAEFIKAELSKHYPSLD----ISLRHIKTTGDKILDAPLAKIGDKGLFTREIEHVMLRNEIDLAVHSLKDLPTETPEGLVITAITEREDNRDVLISKGKYTLKTLPQGAIVATSSLRR 131
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_SYNWW (Porphobilinogen deaminase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=hemC PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.526e-24
Identity = 62/131 (47.33%), Postives = 84/131 (64.12%), Query Frame = 3 
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +R+GTRGS LAL QA    + L +  P+L     ++I  IKTTGDKIL   L+ IG KGLFTKEI++ L++ +IDIAVHSMKD+P+ LP    +   L+RED RD  +          P  +++GT+SLRR
Sbjct:    4 LRLGTRGSQLALWQARHVASLLESSIPDLK----VEIKTIKTTGDKILDVALSKIGDKGLFTKEIEKELLDGEIDIAVHSMKDLPSELPPGLCIAAVLEREDPRDVLLSHKNYSLADLPQAALIGTSSLRR 130
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_SHESR (Porphobilinogen deaminase OS=Shewanella sp. (strain MR-7) GN=hemC PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.526e-24
Identity = 62/131 (47.33%), Postives = 81/131 (61.83%), Query Frame = 3 
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IRI TR SPLA+ QA   + +L  +HP +     ++++ + T GD IL  PLA +GGKGLF KE++ A++  Q DIAVHSMKDVP   PE   L    +RED RDAF+          P G+ VGT+SLRR
Sbjct:    6 IRIATRKSPLAMWQAEFVKAELERVHPGIV----VELLPMSTKGDVILDTPLAKVGGKGLFVKELEVAMLEDQADIAVHSMKDVPVDFPEGLGLEVICEREDPRDAFVSNLYKSISELPLGATVGTSSLRR 132
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_SHESM (Porphobilinogen deaminase OS=Shewanella sp. (strain MR-4) GN=hemC PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.526e-24
Identity = 62/131 (47.33%), Postives = 81/131 (61.83%), Query Frame = 3 
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IRI TR SPLA+ QA   + +L  +HP +     ++++ + T GD IL  PLA +GGKGLF KE++ A++  Q DIAVHSMKDVP   PE   L    +RED RDAF+          P G+ VGT+SLRR
Sbjct:    6 IRIATRKSPLAMWQAEFVKAELERVHPGIV----VELLPMSTKGDVILDTPLAKVGGKGLFVKELEVAMLEDQADIAVHSMKDVPVDFPEGLGLEVICEREDPRDAFVSNLYKSISELPLGATVGTSSLRR 132
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_SHESA (Porphobilinogen deaminase OS=Shewanella sp. (strain ANA-3) GN=hemC PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.526e-24
Identity = 62/131 (47.33%), Postives = 81/131 (61.83%), Query Frame = 3 
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IRI TR SPLA+ QA   + +L  +HP +     ++++ + T GD IL  PLA +GGKGLF KE++ A++  Q DIAVHSMKDVP   PE   L    +RED RDAF+          P G+ VGT+SLRR
Sbjct:    6 IRIATRKSPLAMWQAEFVKAELERVHPGIV----VELLPMSTKGDVILDTPLAKVGGKGLFVKELEVAMLEDQADIAVHSMKDVPVDFPEGLGLEVICEREDPRDAFVSNLYKSISELPLGATVGTSSLRR 132
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_PSEAE (Porphobilinogen deaminase OS=Pseudomonas aeruginosa GN=hemC PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.526e-24
Identity = 65/131 (49.62%), Postives = 80/131 (61.07%), Query Frame = 3 
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IRI TR S LAL QA   + +L   HP L     + ++ + + GDK+L  PLA IGGKGLF KE++ AL+    DIAVHSMKDVP   PE   L    +RED RDAF+          PAGS+VGT+SLRR
Sbjct:    6 IRIATRQSALALWQAEYVKARLEQAHPGLT----VTLLPMTSRGDKLLDAPLAKIGGKGLFVKELETALLEGAADIAVHSMKDVPMDFPEGLGLYTICEREDPRDAFVSNTYASLEQLPAGSVVGTSSLRR 132
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_PSEAB (Porphobilinogen deaminase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=hemC PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.526e-24
Identity = 65/131 (49.62%), Postives = 80/131 (61.07%), Query Frame = 3 
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IRI TR S LAL QA   + +L   HP L     + ++ + + GDK+L  PLA IGGKGLF KE++ AL+    DIAVHSMKDVP   PE   L    +RED RDAF+          PAGS+VGT+SLRR
Sbjct:    6 IRIATRQSALALWQAEYVKARLEQAHPGLT----VTLLPMTSRGDKLLDAPLAKIGGKGLFVKELETALLEGAADIAVHSMKDVPMDFPEGLGLYTICEREDPRDAFVSNTYASLEQLPAGSVVGTSSLRR 132
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_PSEA8 (Porphobilinogen deaminase OS=Pseudomonas aeruginosa (strain LESB58) GN=hemC PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.526e-24
Identity = 65/131 (49.62%), Postives = 80/131 (61.07%), Query Frame = 3 
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IRI TR S LAL QA   + +L   HP L     + ++ + + GDK+L  PLA IGGKGLF KE++ AL+    DIAVHSMKDVP   PE   L    +RED RDAF+          PAGS+VGT+SLRR
Sbjct:    6 IRIATRQSALALWQAEYVKARLEQAHPGLT----VTLLPMTSRGDKLLDAPLAKIGGKGLFVKELETALLEGAADIAVHSMKDVPMDFPEGLGLYTICEREDPRDAFVSNTYASLEQLPAGSVVGTSSLRR 132
The following BLAST results are available for this feature:
BLAST of FC869225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 460
Match NameE-valueIdentityDescription
HEM3_HELAH1.168e-2450.76Porphobilinogen deaminase OS=Helicobacter acinonyc... [more]
HEM3_EHRCR1.168e-2446.27Porphobilinogen deaminase OS=Ehrlichia chaffeensis... [more]
HEM3_CHLT31.168e-2448.89Porphobilinogen deaminase OS=Chloroherpeton thalas... [more]
HEM3_SYNWW1.526e-2447.33Porphobilinogen deaminase OS=Syntrophomonas wolfei... [more]
HEM3_SHESR1.526e-2447.33Porphobilinogen deaminase OS=Shewanella sp. (strai... [more]
HEM3_SHESM1.526e-2447.33Porphobilinogen deaminase OS=Shewanella sp. (strai... [more]
HEM3_SHESA1.526e-2447.33Porphobilinogen deaminase OS=Shewanella sp. (strai... [more]
HEM3_PSEAE1.526e-2449.62Porphobilinogen deaminase OS=Pseudomonas aeruginos... [more]
HEM3_PSEAB1.526e-2449.62Porphobilinogen deaminase OS=Pseudomonas aeruginos... [more]
HEM3_PSEA81.526e-2449.62Porphobilinogen deaminase OS=Pseudomonas aeruginos... [more]

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Properties
Property NameValue
Genbank descriptionC31009H04EF AbioticL1 Citrus clementina cDNA clone C31009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869225 ID=FC869225; Name=FC869225; organism=Citrus clementina; type=EST; length=756bp
GGAAACCAAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTC
TTCTTTCATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGAT
ACTGGGCAGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAG
CAGCTTCTTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGC
TATCCAGGGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGAC
TCCGTCTTTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAG
CCTCTGCTGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGA
GGAAGCCCTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCAT
GGCTTTGCATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAA
TAAAGACAACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGT
GGGAAGGGCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCA
AATTGACATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAG
AGAAGACCATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCA
TTTATTTCGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCAGGAAGCAT
TGTTGGTACTGCTTCACTTAGAAGAAGTCTCAAATACTCCATAGATATCC
ATCATT
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