FC869225

Overview
NameFC869225
Unique NameFC869225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_PSEA6 (Porphobilinogen deaminase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=hemC PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.526e-24
Identity = 63/132 (47.73%), Postives = 82/132 (62.12%), Query Frame = 3
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +IRI TR S LA+ QA   + KL+  HP+L     +++V + T GD+IL  PLA IGGKGLF KE++ A+   + DIAVHSMKDVP   P    L C  +RE+  DAF+          P G+IVGT+SLRR
Sbjct:    5 VIRIATRKSALAMWQAEYVQAKLLEAHPQLK----VELVPMSTQGDRILDTPLAKIGGKGLFIKELEVAMSEGRADIAVHSMKDVPVDFPAGFGLHCICERENPYDAFVSNTYASIEELPQGAIVGTSSLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_EUBE2 (Porphobilinogen deaminase OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=hemC PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.526e-24
Identity = 60/136 (44.12%), Postives = 83/136 (61.03%), Query Frame = 3
Query:  336 RIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRSLKYSI 743
            RIGTRGS LAL Q+   + ++   +PE       ++VIIKTTGDK+  +PLA IG KG F KEI+EAL++  ID+AVHSMKD+P             +RED RD  I          P+G+++GT SLRR+ + ++
Sbjct:    4 RIGTRGSKLALVQSEYVKRRMEEAYPE----DTFELVIIKTTGDKVTDKPLAAIGTKGFFVKEIEEALLSGSIDMAVHSMKDMPAECAAGLTFAKAWKREDCRDVLILKTAGSFSELPSGAVIGTGSLRRACQLAM 135          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_ACIBL (Porphobilinogen deaminase OS=Acidobacteria bacterium (strain Ellin345) GN=hemC PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.526e-24
Identity = 66/134 (49.25%), Postives = 87/134 (64.93%), Query Frame = 3
Query:  324 VAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +A +RIG+RGS LAL QA    N + AL  E   E  +++ IIKTTGDKIL   LA +G KG+FTKEI+EAL   ++D+AVHS+KD+PT LP+   L    +RE+ RD F+          P G+ VGT+SLRR
Sbjct:    1 MATLRIGSRGSQLALWQA----NHISALLRERGHE--VELEIIKTTGDKILDVALAKVGTKGMFTKEIEEALAAGKVDVAVHSLKDLPTELPQGFELAAVTKRENPRDVFLSVKYDSISGLPQGAKVGTSSLRR 128          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_PECCP (Porphobilinogen deaminase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=hemC PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.993e-24
Identity = 65/132 (49.24%), Postives = 82/132 (62.12%), Query Frame = 3
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IIRI TR SPLAL QA   +  L  L+P+L     +++V + T GD IL  PLA +GGKGLF KE++ AL+  + DIAVHSMKDVP   P+   L    +R+D RDAF+          P GS VGT+SLRR
Sbjct:    5 IIRIATRQSPLALWQARYVQQCLNHLYPDLH----VELVPMVTRGDIILDTPLAKVGGKGLFVKELELALLEGRADIAVHSMKDVPVEFPDGLGLTTICERDDPRDAFVSNRYDSLEQLPEGSCVGTSSLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_IDILO (Porphobilinogen deaminase OS=Idiomarina loihiensis GN=hemC PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.993e-24
Identity = 63/141 (44.68%), Postives = 82/141 (58.16%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRSLKYSIDIHH 755
            +RI TR S LAL QA   + +L  LHP L+    +++V + T GD IL  PLA IGGKGLF KE++ A++  + DIAVHSMKD+P   P    L    +RED RDAF+          P G++VGT SLRR  +      H
Sbjct:    5 VRIATRKSKLALWQAEHIQQRLEELHPGLS----VELVPMSTKGDVILDTPLAKIGGKGLFVKELEVAMLEGRADIAVHSMKDLPVEFPPGLELHTICEREDPRDAFVSNNYKNLNELPEGAVVGTCSLRRRCQVKEQFPH 141          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_HELPY (Porphobilinogen deaminase OS=Helicobacter pylori GN=hemC PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.993e-24
Identity = 66/135 (48.89%), Postives = 82/135 (60.74%), Query Frame = 3
Query:  339 IGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRSLKYSI 743
            IG+RGS LAL QA+  + +L     E   E  IQIV  KT GDKIL  PL  IGGKGLFTKE++E L+   ID+AVHS+KDVP    +   L C  +R DVRD F+          P G+ VGT SLRRS++  +
Sbjct:    6 IGSRGSELALWQANHIKERLKK---ECLIESEIQIV--KTKGDKILDTPLNKIGGKGLFTKELEELLLKGAIDLAVHSLKDVPVVFEKGLDLACITKRADVRDTFLSVKFPDLMSLPKGAKVGTTSLRRSMQIKL 135          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_HELP2 (Porphobilinogen deaminase OS=Helicobacter pylori (strain P12) GN=hemC PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.993e-24
Identity = 66/135 (48.89%), Postives = 82/135 (60.74%), Query Frame = 3
Query:  339 IGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRSLKYSI 743
            IG+RGS LAL QA+  + +L     E   E  IQIV  KT GDKIL  PL  IGGKGLFTKE++E L+   ID+AVHS+KDVP    +   L C  +R DVRD F+          P G+ VGT SLRRS++  +
Sbjct:    6 IGSRGSELALWQANHIKERLKK---ECLIESEIQIV--KTKGDKILDTPLNKIGGKGLFTKELEELLLKGTIDLAVHSLKDVPVVFEKGLDLACITKRADVRDTFLSVKFPDLMSLPKGAKVGTTSLRRSMQLKL 135          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_HAMD5 (Porphobilinogen deaminase OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=hemC PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.993e-24
Identity = 61/132 (46.21%), Postives = 83/132 (62.88%), Query Frame = 3
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +IR+ TR SPLAL QAH  +  L   HP+L     + ++ + T GD IL   L+  GGKGLF KE++ A+++++ DIAVHS+KD+P Y PE   L    +RED RDAF+          P GS+VGT+SLRR
Sbjct:    5 MIRLATRQSPLALWQAHYVKTGLEFFHPDLK----VILLPMVTQGDNILGTALSKTGGKGLFVKELERAVLDNRADIAVHSIKDMPLYFPEGLGLVAVCEREDPRDAFLSLRYHDVAQLPEGSVVGTSSLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_DESVM (Porphobilinogen deaminase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=hemC PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.993e-24
Identity = 60/129 (46.51%), Postives = 83/129 (64.34%), Query Frame = 3
Query:  339 IGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            I TRGS LAL QA   ++ +   HP ++    ++++++KT GD IL  PLA +GGKGLF KEI+EAL++ + D+AVHSMKDVP  LPE  +L    +RE+  D F+          P G+ VGT+SLRR
Sbjct:    6 IATRGSKLALWQAEHVKSCIEGQHPGVS----VELLVLKTRGDIILDVPLAKVGGKGLFVKEIEEALLDGRADLAVHSMKDVPMELPEGLVLGIIPEREEPSDTFLSVHHDSLAALPHGATVGTSSLRR 130          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_BACSU (Porphobilinogen deaminase OS=Bacillus subtilis GN=hemC PE=3 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.993e-24
Identity = 61/138 (44.20%), Postives = 86/138 (62.32%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRSLKYSID 746
            I++G+R S LA+ Q      KL  ++P  A E    I  I T GD+I+   L+ +GGKGLF KEI++AL+N +ID+AVHSMKD+P  LPE  ++ C  +RED RDA I            G+++GT+SLRRS +  I+
Sbjct:    5 IKVGSRRSKLAMTQTKWVIQKLKEINPSFAFE----IKEIVTKGDRIVDVTLSKVGGKGLFVKEIEQALLNEEIDMAVHSMKDMPAVLPEGLVIGCIPEREDPRDALISKNRVKLSEMKKGAVIGTSSLRRSAQLLIE 138          
The following BLAST results are available for this feature:
BLAST of FC869225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 460
Match NameE-valueIdentityDescription
HEM3_PSEA61.526e-2447.73Porphobilinogen deaminase OS=Pseudoalteromonas atl... [more]
HEM3_EUBE21.526e-2444.12Porphobilinogen deaminase OS=Eubacterium eligens (... [more]
HEM3_ACIBL1.526e-2449.25Porphobilinogen deaminase OS=Acidobacteria bacteri... [more]
HEM3_PECCP1.993e-2449.24Porphobilinogen deaminase OS=Pectobacterium caroto... [more]
HEM3_IDILO1.993e-2444.68Porphobilinogen deaminase OS=Idiomarina loihiensis... [more]
HEM3_HELPY1.993e-2448.89Porphobilinogen deaminase OS=Helicobacter pylori G... [more]
HEM3_HELP21.993e-2448.89Porphobilinogen deaminase OS=Helicobacter pylori (... [more]
HEM3_HAMD51.993e-2446.21Porphobilinogen deaminase OS=Hamiltonella defensa ... [more]
HEM3_DESVM1.993e-2446.51Porphobilinogen deaminase OS=Desulfovibrio vulgari... [more]
HEM3_BACSU1.993e-2444.20Porphobilinogen deaminase OS=Bacillus subtilis GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31009H04EF AbioticL1 Citrus clementina cDNA clone C31009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869225 ID=FC869225; Name=FC869225; organism=Citrus clementina; type=EST; length=756bp
GGAAACCAAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTC
TTCTTTCATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGAT
ACTGGGCAGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAG
CAGCTTCTTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGC
TATCCAGGGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGAC
TCCGTCTTTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAG
CCTCTGCTGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGA
GGAAGCCCTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCAT
GGCTTTGCATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAA
TAAAGACAACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGT
GGGAAGGGCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCA
AATTGACATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAG
AGAAGACCATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCA
TTTATTTCGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCAGGAAGCAT
TGTTGGTACTGCTTCACTTAGAAGAAGTCTCAAATACTCCATAGATATCC
ATCATT
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