FC869225

Overview
NameFC869225
Unique NameFC869225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_LARHH (Porphobilinogen deaminase OS=Laribacter hongkongensis (strain HLHK9) GN=hemC PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.603e-24
Identity = 64/129 (49.61%), Postives = 81/129 (62.79%), Query Frame = 3
Query:  339 IGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            I +R SPLA+ QA   R +L AL+P L     + I+ I T GD+IL + L  IGGKGLF KE++ A+   Q D+AVHS+KDVP  LPE   L    +RED RDAF+          PAG++VGTASLRR
Sbjct:    6 IASRESPLAMWQAEHIRARLQALYPGLE----VSILGITTQGDRILDKTLNKIGGKGLFVKELELAMQEGQADLAVHSIKDVPMDLPEGFALAAICEREDPRDAFVSSRYASLSELPAGAVVGTASLRR 130          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_HELPG (Porphobilinogen deaminase OS=Helicobacter pylori (strain G27) GN=hemC PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.603e-24
Identity = 66/135 (48.89%), Postives = 82/135 (60.74%), Query Frame = 3
Query:  339 IGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRSLKYSI 743
            IG+RGS LAL QA+  + +L     E   E  IQIV  KT GDKIL  PL  IGGKGLFTKE++E L+   ID+AVHS+KDVP    +   L C  +R DVRD F+          P G+ VGT SLRRS++  +
Sbjct:    6 IGSRGSELALWQANHIKERLKK---ECFIESEIQIV--KTKGDKILDTPLNKIGGKGLFTKELEELLLKGAIDLAVHSLKDVPVVFEKGLDLACITKRADVRDTFLSVKFPDLMSLPKGAKVGTTSLRRSMQIKL 135          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_EHRCJ (Porphobilinogen deaminase OS=Ehrlichia canis (strain Jake) GN=hemC PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.603e-24
Identity = 62/134 (46.27%), Postives = 83/134 (61.94%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRSLK 734
            IRIGTRGS LALAQ  E  N L    PE+     IQ+V IKT+GD     P+  IGGKGLF KEI+EAL+  ++D+AVHS+KD+P +  +  I+PC L+R    D F+          P  + VGT+S+RR ++
Sbjct:    3 IRIGTRGSVLALAQTLEVTNLLNRYFPEIN----IQVVKIKTSGDINNKVPINTIGGKGLFIKEIEEALLIGKVDLAVHSVKDIPAFYCDGLIIPCVLKRSSPYDVFVSSKYQSIKSLPINATVGTSSIRRKVQ 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_CAMHC (Porphobilinogen deaminase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=hemC PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.603e-24
Identity = 62/137 (45.26%), Postives = 85/137 (62.04%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRSLKYSI 743
            +RI TRGS LAL Q+   +N +     E   E  +++  +KT GD IL  PLA IGGKGLFTKE++E+++  + D+AVHS+KDVP   P+  IL    +REDVRD+F+          P G+ VGT SLRR ++  I
Sbjct:    4 LRIATRGSALALWQSKYIQNLI-----ENNTEVEVELQSMKTKGDVILDTPLAKIGGKGLFTKELEESMLRGESDLAVHSLKDVPVVFPKGLILTAISEREDVRDSFVSEKFASFNELPKGAKVGTTSLRRKMQLLI 135          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_SHESH (Porphobilinogen deaminase OS=Shewanella sediminis (strain HAW-EB3) GN=hemC PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.400e-24
Identity = 62/132 (46.97%), Postives = 81/132 (61.36%), Query Frame = 3
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +IRI TR SPLAL QA   + +L   H  L     ++++ + T GD IL  PLA +GGKGLF KE++ A++  + DIAVHSMKDVP   PE   L    +RED RDAF+          P G++VGT+SLRR
Sbjct:    5 VIRIATRKSPLALWQAEFVKAELEKFHEGLT----VELLPMSTKGDIILDTPLAKVGGKGLFVKELEVAMLEDRADIAVHSMKDVPVDFPEGLGLEVICEREDPRDAFVSNNYKNISELPQGAVVGTSSLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_SHEHH (Porphobilinogen deaminase OS=Shewanella halifaxensis (strain HAW-EB4) GN=hemC PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.400e-24
Identity = 61/132 (46.21%), Postives = 82/132 (62.12%), Query Frame = 3
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +IRI TR SPLA+ QA   + +L  +H  L     ++++ + T GD IL  PLA +GGKGLF KE++ A++  + DIAVHSMKDVP   PE   L    +RED RDAF+          P G++VGT+SLRR
Sbjct:    5 LIRIATRKSPLAMWQAEFVKAELEKIHEGLT----VELLPMSTKGDIILDTPLAKVGGKGLFVKELEVAMLEGKADIAVHSMKDVPVEFPEGLGLEVICEREDPRDAFVSNTYKTIEDLPQGAVVGTSSLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_CHRVO (Porphobilinogen deaminase OS=Chromobacterium violaceum GN=hemC PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.400e-24
Identity = 61/131 (46.56%), Postives = 86/131 (65.65%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            I I +R S LA+ QA   + +L AL+P L     ++I+ + T GD+IL + L+ IGGKGLF KE+++AL++ + D+AVHS+KDVP  LP+   L    +RED RDAF+          PAGS+VGT+SLRR
Sbjct:    4 IVIASRESRLAMWQAEHIQARLQALYPHLT----VEILGMTTQGDQILDKTLSKIGGKGLFVKELEQALMDGRADLAVHSLKDVPMTLPDGFALAAVCEREDPRDAFVSNRYQHLSELPAGSVVGTSSLRR 130          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_ORITB (Porphobilinogen deaminase OS=Orientia tsutsugamushi (strain Boryong) GN=hemC PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.440e-24
Identity = 67/135 (49.63%), Postives = 86/135 (63.70%), Query Frame = 3
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRSLK 734
            IIR+G+R S LAL QA     K+     +L    AI I+ IKTTGD I ++ L DIGGKGLF KEI+ AL+N+ IDIAVHS+KDVP YLP+   L   L+R DV D  +          P G+IVGT+S+RR ++
Sbjct:    2 IIRVGSRASRLALIQAQAVVQKIN----DLLGLNAI-IIPIKTTGDLIQNKNLYDIGGKGLFLKEIEYALLNNTIDIAVHSLKDVPAYLPDGLQLAAVLERGDVGDMLVSKIANKITDLPLGAIVGTSSVRRRIQ 131          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_SHEB9 (Porphobilinogen deaminase OS=Shewanella baltica (strain OS195) GN=hemC PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.799e-24
Identity = 61/131 (46.56%), Postives = 81/131 (61.83%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IRI TR SPLA+ QA   + +L  +HP +     ++++ + T GD IL  PLA +GGKGLF KE++ A+++   DIAVHSMKDVP   PE   L    +RED RDAF+          P G+ VGT+SLRR
Sbjct:    6 IRIATRKSPLAMWQAEFVKAELERIHPGIV----VELLPMSTKGDVILDTPLAKVGGKGLFVKELEVAMLDDLADIAVHSMKDVPVDFPEGLGLEVICEREDPRDAFVSNLYKSISELPLGATVGTSSLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_SHEB8 (Porphobilinogen deaminase OS=Shewanella baltica (strain OS185) GN=hemC PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.799e-24
Identity = 61/131 (46.56%), Postives = 81/131 (61.83%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IRI TR SPLA+ QA   + +L  +HP +     ++++ + T GD IL  PLA +GGKGLF KE++ A+++   DIAVHSMKDVP   PE   L    +RED RDAF+          P G+ VGT+SLRR
Sbjct:    6 IRIATRKSPLAMWQAEFVKAELERIHPGIV----VELLPMSTKGDVILDTPLAKVGGKGLFVKELEVAMLDDLADIAVHSMKDVPVDFPEGLGLEVICEREDPRDAFVSNLYKSISELPLGATVGTSSLRR 132          
The following BLAST results are available for this feature:
BLAST of FC869225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 460
Match NameE-valueIdentityDescription
HEM3_LARHH2.603e-2449.61Porphobilinogen deaminase OS=Laribacter hongkongen... [more]
HEM3_HELPG2.603e-2448.89Porphobilinogen deaminase OS=Helicobacter pylori (... [more]
HEM3_EHRCJ2.603e-2446.27Porphobilinogen deaminase OS=Ehrlichia canis (stra... [more]
HEM3_CAMHC2.603e-2445.26Porphobilinogen deaminase OS=Campylobacter hominis... [more]
HEM3_SHESH3.400e-2446.97Porphobilinogen deaminase OS=Shewanella sediminis ... [more]
HEM3_SHEHH3.400e-2446.21Porphobilinogen deaminase OS=Shewanella halifaxens... [more]
HEM3_CHRVO3.400e-2446.56Porphobilinogen deaminase OS=Chromobacterium viola... [more]
HEM3_ORITB4.440e-2449.63Porphobilinogen deaminase OS=Orientia tsutsugamush... [more]
HEM3_SHEB95.799e-2446.56Porphobilinogen deaminase OS=Shewanella baltica (s... [more]
HEM3_SHEB85.799e-2446.56Porphobilinogen deaminase OS=Shewanella baltica (s... [more]

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Properties
Property NameValue
Genbank descriptionC31009H04EF AbioticL1 Citrus clementina cDNA clone C31009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869225 ID=FC869225; Name=FC869225; organism=Citrus clementina; type=EST; length=756bp
GGAAACCAAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTC
TTCTTTCATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGAT
ACTGGGCAGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAG
CAGCTTCTTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGC
TATCCAGGGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGAC
TCCGTCTTTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAG
CCTCTGCTGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGA
GGAAGCCCTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCAT
GGCTTTGCATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAA
TAAAGACAACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGT
GGGAAGGGCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCA
AATTGACATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAG
AGAAGACCATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCA
TTTATTTCGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCAGGAAGCAT
TGTTGGTACTGCTTCACTTAGAAGAAGTCTCAAATACTCCATAGATATCC
ATCATT
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