FC869225

Overview
NameFC869225
Unique NameFC869225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_RICAH (Porphobilinogen deaminase OS=Rickettsia akari (strain Hartford) GN=hemC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.891e-24
Identity = 58/131 (44.27%), Postives = 85/131 (64.89%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IRIGTR SPLAL Q +    ++    P++       IV I T+GD I ++PL DIGGK LF KEI++AL++ +ID+AVHS+KDVP  +PE+ ++   L+RED RD F+          P  S++G++++RR
Sbjct:    5 IRIGTRNSPLALIQTNLVIQQIKQFFPDIN----CAIVPIITSGDLIQNKPLYDIGGKALFLKEIEQALLDKKIDLAVHSLKDVPGRIPEELVISAVLEREDPRDVFVCLNYKSIKELPQHSVIGSSAVRR 131          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_BACA2 (Porphobilinogen deaminase OS=Bacillus amyloliquefaciens (strain FZB42) GN=hemC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.891e-24
Identity = 62/132 (46.97%), Postives = 82/132 (62.12%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRS 728
            I++G+R S LA+ Q     NKL  L+P    E    I  I T GD+IL   L+ +GGKGLF KEI++AL++ +ID+AVHSMKD+P  LPE  ++ C  +RED RDA I            G I+GT+SLRRS
Sbjct:    4 IKVGSRRSKLAMTQTKWVINKLKELNPSYNFE----IREIVTKGDRILDVTLSKVGGKGLFVKEIEQALLHQEIDMAVHSMKDMPAVLPEGLVIGCIPKREDPRDALISKGHQKLDGIKEGGIIGTSSLRRS 131          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_THICR (Porphobilinogen deaminase OS=Thiomicrospira crunogena (strain XCL-2) GN=hemC PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.292e-23
Identity = 60/131 (45.80%), Postives = 82/131 (62.60%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +RI TR SPLA+ QA   + +L   H  L     ++++ + T GDKIL  PLA IGGKGLFTKE+++ ++  + DIAVHSMKDVP  LPE   L   L+R +  DAF+          P G+++GT+SLRR
Sbjct:    5 LRIATRKSPLAMWQAEFVKAELEKHHEGLT----VELLPMSTKGDKILDVPLAKIGGKGLFTKELEDRMLAGEADIAVHSMKDVPMVLPEGFALGAILERHEPTDAFVSNDYAHFEELPQGAVLGTSSLRR 131          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_RICCK (Porphobilinogen deaminase OS=Rickettsia canadensis (strain McKiel) GN=hemC PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.292e-23
Identity = 59/131 (45.04%), Postives = 85/131 (64.89%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IRIGTR SPLAL Q +    ++    P++  +    IV I T+GD I ++PL DIGGK LF KEI++AL++ +ID+AVHS+KDVP  +PE  I+   L+RED RD F+          P  +I+G++++RR
Sbjct:    5 IRIGTRKSPLALIQTNLVIQQIKQFVPDINYK----IVPITTSGDLIQNKPLYDIGGKALFLKEIEQALLDKKIDLAVHSLKDVPGRIPEDLIIAAVLEREDPRDVFVCLKYKSIEELPQNAIIGSSAVRR 131          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_MYXXD (Porphobilinogen deaminase OS=Myxococcus xanthus (strain DK 1622) GN=hemC PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.292e-23
Identity = 62/132 (46.97%), Postives = 81/132 (61.36%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRS 728
            +RI TR SPLAL QA      L + HP L     + +V + T GD+ LS PL+ +GGKGLF KEI++AL++ + DIAVHS+KD+ +  PE  IL    +RED RD F           P G+ VGT+SLRRS
Sbjct:    5 VRIATRQSPLALWQARHVGALLTSRHPGLE----VTLVEMTTEGDRFLSAPLSAVGGKGLFVKEIEQALLDGRADIAVHSLKDMTSVFPEGLILAAVPEREDPRDVFCGLGGLTLDTLPQGARVGTSSLRRS 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_WOLWR (Porphobilinogen deaminase OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=hemC PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.687e-23
Identity = 59/135 (43.70%), Postives = 85/135 (62.96%), Query Frame = 3
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRSLK 734
            +++IGTRGS LA+ QA E + KL+   P L+    I+IV IKT+GDK  +  LA+IGGKGLF KEI+  L+ + ID+AVHS+KDVP +      +PC L+R    DAFI          P  + + T+++RR ++
Sbjct:    2 LVKIGTRGSKLAVVQALEAKQKLLDSFPNLS----IEIVKIKTSGDKYANANLAEIGGKGLFIKEIEAELLENNIDMAVHSLKDVPAFFSWGLTIPCVLERLSPCDAFISHKHNSLESLPQQATIATSAIRRKVQ 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_LYSSC (Porphobilinogen deaminase OS=Lysinibacillus sphaericus (strain C3-41) GN=hemC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.204e-23
Identity = 63/132 (47.73%), Postives = 80/132 (60.61%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRS 728
            I +G+R S LAL Q +   N+L A       E    +  I T GD+IL   L+ +GGKGLF KEI++AL   +ID AVHSMKD+P  LPE  ++ C   RED RDAFI          PAG++VGT+SLRRS
Sbjct:    4 IIVGSRRSKLALTQTNWFINELKAAGAPFEFE----VKEIVTKGDQILDVQLSKVGGKGLFVKEIEQALYEKEIDFAVHSMKDMPAVLPEGLVIGCIPPREDARDAFISKGHVKFSELPAGAVVGTSSLRRS 131          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_LAWIP (Porphobilinogen deaminase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=hemC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.204e-23
Identity = 60/131 (45.80%), Postives = 81/131 (61.83%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            I I TRGS LA  QA+  +++L  ++  L     + +++IKT GD IL  PLA +GGKGLF KEI+EAL++ + D AVHSMKDVP  LP +  L    +RED  D F+          P  ++VGT+SLRR
Sbjct:    4 ITIATRGSKLAFWQANYIKDQLQKMYSYLE----VDLMVIKTKGDHILDVPLAKVGGKGLFVKEIEEALLSGEADCAVHSMKDVPMELPFELCLAAITEREDPTDMFLSIKYSGVKSLPENALVGTSSLRR 130          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_CHLPD (Porphobilinogen deaminase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=hemC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.204e-23
Identity = 61/129 (47.29%), Postives = 80/129 (62.02%), Query Frame = 3
Query:  339 IGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IGTR SPLAL QA  T+ +L   +PEL     I + ++KTTGD +L  PL+ IG  GLFTK+I++ LI  +ID+AVHS+KDVPT  PE  I+    +RED RD  I          P  + + T+SLRR
Sbjct:    7 IGTRSSPLALWQAEFTKAELSRHYPELD----ITLKLVKTTGDVLLDSPLSKIGDMGLFTKDIEKHLIAKEIDLAVHSLKDVPTSTPEGLIITSFTEREDTRDVIISRSGETLLNLPQNARIATSSLRR 131          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_BURP8 (Porphobilinogen deaminase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=hemC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.204e-23
Identity = 61/136 (44.85%), Postives = 85/136 (62.50%), Query Frame = 3
Query:  318 TKVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            T  A + I +R S LA+ QA   R  L  L+P       ++I+ + T GD+IL + L+ +GGKGLF KE++ AL + + D+AVHS+KDVP  LPE  +L   ++RED RDAF+          PAGS+VGT+SLRR
Sbjct:    9 TPPATLVIASRESRLAMWQAEHVRCALHKLYPSCD----VKILGMTTRGDQILDRTLSKVGGKGLFVKELENALADGRADLAVHSLKDVPMELPEGFVLSTIMEREDPRDAFVSNQYDSLAALPAGSVVGTSSLRR 140          
The following BLAST results are available for this feature:
BLAST of FC869225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 460
Match NameE-valueIdentityDescription
HEM3_RICAH9.891e-2444.27Porphobilinogen deaminase OS=Rickettsia akari (str... [more]
HEM3_BACA29.891e-2446.97Porphobilinogen deaminase OS=Bacillus amyloliquefa... [more]
HEM3_THICR1.292e-2345.80Porphobilinogen deaminase OS=Thiomicrospira crunog... [more]
HEM3_RICCK1.292e-2345.04Porphobilinogen deaminase OS=Rickettsia canadensis... [more]
HEM3_MYXXD1.292e-2346.97Porphobilinogen deaminase OS=Myxococcus xanthus (s... [more]
HEM3_WOLWR1.687e-2343.70Porphobilinogen deaminase OS=Wolbachia sp. subsp. ... [more]
HEM3_LYSSC2.204e-2347.73Porphobilinogen deaminase OS=Lysinibacillus sphaer... [more]
HEM3_LAWIP2.204e-2345.80Porphobilinogen deaminase OS=Lawsonia intracellula... [more]
HEM3_CHLPD2.204e-2347.29Porphobilinogen deaminase OS=Chlorobium phaeobacte... [more]
HEM3_BURP82.204e-2344.85Porphobilinogen deaminase OS=Burkholderia phymatum... [more]

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Properties
Property NameValue
Genbank descriptionC31009H04EF AbioticL1 Citrus clementina cDNA clone C31009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869225 ID=FC869225; Name=FC869225; organism=Citrus clementina; type=EST; length=756bp
GGAAACCAAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTC
TTCTTTCATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGAT
ACTGGGCAGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAG
CAGCTTCTTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGC
TATCCAGGGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGAC
TCCGTCTTTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAG
CCTCTGCTGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGA
GGAAGCCCTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCAT
GGCTTTGCATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAA
TAAAGACAACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGT
GGGAAGGGCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCA
AATTGACATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAG
AGAAGACCATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCA
TTTATTTCGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCAGGAAGCAT
TGTTGGTACTGCTTCACTTAGAAGAAGTCTCAAATACTCCATAGATATCC
ATCATT
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