FC869225

Overview
NameFC869225
Unique NameFC869225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_ECO55 (Porphobilinogen deaminase OS=Escherichia coli (strain 55989 / EAEC) GN=hemC PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.510e-29
Identity = 70/132 (53.03%), Postives = 88/132 (66.67%), Query Frame = 3 
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++RI TR SPLAL QAH  ++KLMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKDVP   P+   L    +RED RDAF+          PAGSIVGT+SLRR
Sbjct:    5 VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRR 132
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_ECO81 (Porphobilinogen deaminase OS=Escherichia coli O81 (strain ED1a) GN=hemC PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.584e-29
Identity = 70/132 (53.03%), Postives = 88/132 (66.67%), Query Frame = 3 
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++RI TR SPLAL QAH  ++KLMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKDVP   P+   L    +RED RDAF+          PAGSIVGT+SLRR
Sbjct:    5 VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICKREDPRDAFVSNTYDSLDALPAGSIVGTSSLRR 132
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_ECO45 (Porphobilinogen deaminase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=hemC PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.584e-29
Identity = 70/132 (53.03%), Postives = 88/132 (66.67%), Query Frame = 3 
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++RI TR SPLAL QAH  ++KLMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKDVP   P+   L    +RED RDAF+          PAGSIVGT+SLRR
Sbjct:    5 VLRIATRQSPLALWQAHYVKDKLMASHPGLV----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICKREDPRDAFVSNTYDSLDALPAGSIVGTSSLRR 132
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_ESCF3 (Porphobilinogen deaminase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=hemC PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.742e-28
Identity = 69/132 (52.27%), Postives = 87/132 (65.91%), Query Frame = 3 
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++RI TR SPLAL QAH  ++ LMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKDVP   P+   L    +RED RDAF+          PAGSIVGT+SLRR
Sbjct:    5 VLRIATRQSPLALWQAHYVKDALMAKHPGLT----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNKYASLDELPAGSIVGTSSLRR 132
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_BRUSU (Porphobilinogen deaminase OS=Brucella suis GN=hemC PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.742e-28
Identity = 70/135 (51.85%), Postives = 91/135 (67.41%), Query Frame = 3 
Query:  321 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            K   ++IGTRGS LALAQA+ TR  L   H     E AI+I+ + T GD+I  +PL+++GGKGLFT+EI++AL + +IDIAVHS KD+PT LPE   L   L+RED RDAFI          P G+ VG++SLRR
Sbjct:    7 KNGTLKIGTRGSKLALAQAYLTRRLLQEAHG--LPEDAIEILPMSTAGDRIQDRPLSEVGGKGLFTEEIEQALKDGRIDIAVHSTKDMPTVLPEGLHLSVFLEREDPRDAFIGRSARRFMDLPQGATVGSSSLRR 139
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_BRUSI (Porphobilinogen deaminase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=hemC PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.742e-28
Identity = 70/135 (51.85%), Postives = 91/135 (67.41%), Query Frame = 3 
Query:  321 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            K   ++IGTRGS LALAQA+ TR  L   H     E AI+I+ + T GD+I  +PL+++GGKGLFT+EI++AL + +IDIAVHS KD+PT LPE   L   L+RED RDAFI          P G+ VG++SLRR
Sbjct:    7 KNGTLKIGTRGSKLALAQAYLTRRLLQEAHG--LPEDAIEILPMSTAGDRIQDRPLSEVGGKGLFTEEIEQALKDGRIDIAVHSTKDMPTVLPEGLHLSVFLEREDPRDAFIGRSARRFMDLPQGATVGSSSLRR 139
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_BRUC2 (Porphobilinogen deaminase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=hemC PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.742e-28
Identity = 70/135 (51.85%), Postives = 91/135 (67.41%), Query Frame = 3 
Query:  321 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            K   ++IGTRGS LALAQA+ TR  L   H     E AI+I+ + T GD+I  +PL+++GGKGLFT+EI++AL + +IDIAVHS KD+PT LPE   L   L+RED RDAFI          P G+ VG++SLRR
Sbjct:    7 KNGTLKIGTRGSKLALAQAYLTRRLLQEAHG--LPEDAIEILPMSTAGDRIQDRPLSEVGGKGLFTEEIEQALKDGRIDIAVHSTKDMPTVLPEGLHLSVFLEREDPRDAFIGRSARRFMDLPQGATVGSSSLRR 139
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_ALCBS (Porphobilinogen deaminase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=hemC PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.742e-28
Identity = 69/132 (52.27%), Postives = 87/132 (65.91%), Query Frame = 3 
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            I+RI TR SPLA+ QA   + +L +LH  L     +++V IKT GDKIL  PLA IGGKGLF KE++EA+++ + DIAVHSMKDVP  LP    LP   +RED RDAF+          P G+ VGT+SLRR
Sbjct:    5 ILRIATRSSPLAIWQAEYVQQRLESLHEGLR----VELVRIKTQGDKILDTPLAKIGGKGLFVKELEEAMMDGRADIAVHSMKDVPMELPPGFALPVICEREDPRDAFVSNTFDGLSSLPHGACVGTSSLRR 132
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_SALTY (Porphobilinogen deaminase OS=Salmonella typhimurium GN=hemC PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.275e-28
Identity = 69/132 (52.27%), Postives = 86/132 (65.15%), Query Frame = 3 
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++RI TR SPLAL QAH  ++ LMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+  + DIAVHSMKDVP   P+   L    +RED RDAF+          PAGSIVGT+SLRR
Sbjct:    5 VLRIATRQSPLALWQAHYVKDALMATHPGLT----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEIALLEKRADIAVHSMKDVPVAFPDGLGLVTICEREDPRDAFVSNKYHSLDDLPAGSIVGTSSLRR 132
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_SALTI (Porphobilinogen deaminase OS=Salmonella typhi GN=hemC PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.275e-28
Identity = 69/132 (52.27%), Postives = 86/132 (65.15%), Query Frame = 3 
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++RI TR SPLAL QAH  ++ LMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+  + DIAVHSMKDVP   P+   L    +RED RDAF+          PAGSIVGT+SLRR
Sbjct:    5 VLRIATRQSPLALWQAHYVKDALMATHPGLT----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEIALLEKRADIAVHSMKDVPVAFPDGLGLVTICEREDPRDAFVSNKYHSLDDLPAGSIVGTSSLRR 132
The following BLAST results are available for this feature:
BLAST of FC869225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 460
Match NameE-valueIdentityDescription
HEM3_ECO553.510e-2953.03Porphobilinogen deaminase OS=Escherichia coli (str... [more]
HEM3_ECO814.584e-2953.03Porphobilinogen deaminase OS=Escherichia coli O81 ... [more]
HEM3_ECO454.584e-2953.03Porphobilinogen deaminase OS=Escherichia coli O45:... [more]
HEM3_ESCF31.742e-2852.27Porphobilinogen deaminase OS=Escherichia fergusoni... [more]
HEM3_BRUSU1.742e-2851.85Porphobilinogen deaminase OS=Brucella suis GN=hemC... [more]
HEM3_BRUSI1.742e-2851.85Porphobilinogen deaminase OS=Brucella suis (strain... [more]
HEM3_BRUC21.742e-2851.85Porphobilinogen deaminase OS=Brucella canis (strai... [more]
HEM3_ALCBS1.742e-2852.27Porphobilinogen deaminase OS=Alcanivorax borkumens... [more]
HEM3_SALTY2.275e-2852.27Porphobilinogen deaminase OS=Salmonella typhimuriu... [more]
HEM3_SALTI2.275e-2852.27Porphobilinogen deaminase OS=Salmonella typhi GN=h... [more]

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Properties
Property NameValue
Genbank descriptionC31009H04EF AbioticL1 Citrus clementina cDNA clone C31009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869225 ID=FC869225; Name=FC869225; organism=Citrus clementina; type=EST; length=756bp
GGAAACCAAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTC
TTCTTTCATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGAT
ACTGGGCAGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAG
CAGCTTCTTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGC
TATCCAGGGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGAC
TCCGTCTTTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAG
CCTCTGCTGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGA
GGAAGCCCTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCAT
GGCTTTGCATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAA
TAAAGACAACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGT
GGGAAGGGCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCA
AATTGACATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAG
AGAAGACCATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCA
TTTATTTCGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCAGGAAGCAT
TGTTGGTACTGCTTCACTTAGAAGAAGTCTCAAATACTCCATAGATATCC
ATCATT
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