FC869225

Overview
NameFC869225
Unique NameFC869225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9484 contig Ccv1_Contig9484:1..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_SALSV (Porphobilinogen deaminase OS=Salmonella schwarzengrund (strain CVM19633) GN=hemC PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.275e-28
Identity = 69/132 (52.27%), Postives = 86/132 (65.15%), Query Frame = 3 
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++RI TR SPLAL QAH  ++ LMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+  + DIAVHSMKDVP   P+   L    +RED RDAF+          PAGSIVGT+SLRR
Sbjct:    5 VLRIATRQSPLALWQAHYVKDALMATHPGLT----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEIALLEKRADIAVHSMKDVPVAFPDGLGLVTICEREDPRDAFVSNKYHSLDDLPAGSIVGTSSLRR 132
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_SALPK (Porphobilinogen deaminase OS=Salmonella paratyphi A (strain AKU_12601) GN=hemC PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.275e-28
Identity = 69/132 (52.27%), Postives = 86/132 (65.15%), Query Frame = 3 
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++RI TR SPLAL QAH  ++ LMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+  + DIAVHSMKDVP   P+   L    +RED RDAF+          PAGSIVGT+SLRR
Sbjct:    5 VLRIATRQSPLALWQAHYVKDALMATHPGLT----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEIALLEKRADIAVHSMKDVPVAFPDGLGLVTICEREDPRDAFVSNKYHSLDDLPAGSIVGTSSLRR 132
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_SALPC (Porphobilinogen deaminase OS=Salmonella paratyphi C (strain RKS4594) GN=hemC PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.275e-28
Identity = 69/132 (52.27%), Postives = 86/132 (65.15%), Query Frame = 3 
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++RI TR SPLAL QAH  ++ LMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+  + DIAVHSMKDVP   P+   L    +RED RDAF+          PAGSIVGT+SLRR
Sbjct:    5 VLRIATRQSPLALWQAHYVKDALMATHPGLT----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEIALLEKRADIAVHSMKDVPVAFPDGLGLVTICEREDPRDAFVSNKYHSLDDLPAGSIVGTSSLRR 132
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_SALPA (Porphobilinogen deaminase OS=Salmonella paratyphi A GN=hemC PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.275e-28
Identity = 69/132 (52.27%), Postives = 86/132 (65.15%), Query Frame = 3 
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++RI TR SPLAL QAH  ++ LMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+  + DIAVHSMKDVP   P+   L    +RED RDAF+          PAGSIVGT+SLRR
Sbjct:    5 VLRIATRQSPLALWQAHYVKDALMATHPGLT----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEIALLEKRADIAVHSMKDVPVAFPDGLGLVTICEREDPRDAFVSNKYHSLDDLPAGSIVGTSSLRR 132
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_SALDC (Porphobilinogen deaminase OS=Salmonella dublin (strain CT_02021853) GN=hemC PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.275e-28
Identity = 69/132 (52.27%), Postives = 86/132 (65.15%), Query Frame = 3 
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++RI TR SPLAL QAH  ++ LMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+  + DIAVHSMKDVP   P+   L    +RED RDAF+          PAGSIVGT+SLRR
Sbjct:    5 VLRIATRQSPLALWQAHYVKDALMATHPGLT----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEIALLEKRADIAVHSMKDVPVAFPDGLGLVTICEREDPRDAFVSNKYHSLDDLPAGSIVGTSSLRR 132
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_BRUME (Porphobilinogen deaminase OS=Brucella melitensis GN=hemC PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.275e-28
Identity = 70/135 (51.85%), Postives = 91/135 (67.41%), Query Frame = 3 
Query:  321 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            K   ++IGTRGS LALAQA+ TR  L   H     E AI+I+ + T GD+I  +PL+++GGKGLFT+EI++AL + +IDIAVHS KD+PT LPE   L   L+RED RDAFI          P G+ VG++SLRR
Sbjct:    7 KNGTLKIGTRGSKLALAQAYLTRRLLQEAHG--LPEDAIEILPMSTAGDRIQDRPLSEVGGKGLFTEEIEQALKDGRIDIAVHSTKDMPTALPEGLHLSVFLEREDPRDAFIGRSARRFMDLPQGATVGSSSLRR 139
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_BRUMB (Porphobilinogen deaminase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=hemC PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.275e-28
Identity = 70/135 (51.85%), Postives = 91/135 (67.41%), Query Frame = 3 
Query:  321 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            K   ++IGTRGS LALAQA+ TR  L   H     E AI+I+ + T GD+I  +PL+++GGKGLFT+EI++AL + +IDIAVHS KD+PT LPE   L   L+RED RDAFI          P G+ VG++SLRR
Sbjct:    7 KNGTLKIGTRGSKLALAQAYLTRRLLQEAHG--LPEDAIEILPMSTAGDRIQDRPLSEVGGKGLFTEEIEQALKDGRIDIAVHSTKDMPTALPEGLHLSVFLEREDPRDAFIGRSARRFMDLPQGATVGSSSLRR 139
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_BRUAB (Porphobilinogen deaminase OS=Brucella abortus GN=hemC PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.275e-28
Identity = 70/135 (51.85%), Postives = 91/135 (67.41%), Query Frame = 3 
Query:  321 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            K   ++IGTRGS LALAQA+ TR  L   H     E AI+I+ + T GD+I  +PL+++GGKGLFT+EI++AL + +IDIAVHS KD+PT LPE   L   L+RED RDAFI          P G+ VG++SLRR
Sbjct:    7 KNGTLKIGTRGSKLALAQAYLTRRLLQEAHG--LPEDAIEILPMSTAGDRIQDRPLSEVGGKGLFTEEIEQALKDGRIDIAVHSTKDMPTALPEGLHLSVFLEREDPRDAFIGRSARRFMDLPQGATVGSSSLRR 139
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_BRUA2 (Porphobilinogen deaminase OS=Brucella abortus (strain 2308) GN=hemC PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.275e-28
Identity = 70/135 (51.85%), Postives = 91/135 (67.41%), Query Frame = 3 
Query:  321 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            K   ++IGTRGS LALAQA+ TR  L   H     E AI+I+ + T GD+I  +PL+++GGKGLFT+EI++AL + +IDIAVHS KD+PT LPE   L   L+RED RDAFI          P G+ VG++SLRR
Sbjct:    7 KNGTLKIGTRGSKLALAQAYLTRRLLQEAHG--LPEDAIEILPMSTAGDRIQDRPLSEVGGKGLFTEEIEQALKDGRIDIAVHSTKDMPTALPEGLHLSVFLEREDPRDAFIGRSARRFMDLPQGATVGSSSLRR 139
[Close]
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_BRUA1 (Porphobilinogen deaminase OS=Brucella abortus (strain S19) GN=hemC PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.275e-28
Identity = 70/135 (51.85%), Postives = 91/135 (67.41%), Query Frame = 3 
Query:  321 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            K   ++IGTRGS LALAQA+ TR  L   H     E AI+I+ + T GD+I  +PL+++GGKGLFT+EI++AL + +IDIAVHS KD+PT LPE   L   L+RED RDAFI          P G+ VG++SLRR
Sbjct:    7 KNGTLKIGTRGSKLALAQAYLTRRLLQEAHG--LPEDAIEILPMSTAGDRIQDRPLSEVGGKGLFTEEIEQALKDGRIDIAVHSTKDMPTALPEGLHLSVFLEREDPRDAFIGRSARRFMDLPQGATVGSSSLRR 139
The following BLAST results are available for this feature:
BLAST of FC869225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 460
Match NameE-valueIdentityDescription
HEM3_SALSV2.275e-2852.27Porphobilinogen deaminase OS=Salmonella schwarzeng... [more]
HEM3_SALPK2.275e-2852.27Porphobilinogen deaminase OS=Salmonella paratyphi ... [more]
HEM3_SALPC2.275e-2852.27Porphobilinogen deaminase OS=Salmonella paratyphi ... [more]
HEM3_SALPA2.275e-2852.27Porphobilinogen deaminase OS=Salmonella paratyphi ... [more]
HEM3_SALDC2.275e-2852.27Porphobilinogen deaminase OS=Salmonella dublin (st... [more]
HEM3_BRUME2.275e-2851.85Porphobilinogen deaminase OS=Brucella melitensis G... [more]
HEM3_BRUMB2.275e-2851.85Porphobilinogen deaminase OS=Brucella melitensis b... [more]
HEM3_BRUAB2.275e-2851.85Porphobilinogen deaminase OS=Brucella abortus GN=h... [more]
HEM3_BRUA22.275e-2851.85Porphobilinogen deaminase OS=Brucella abortus (str... [more]
HEM3_BRUA12.275e-2851.85Porphobilinogen deaminase OS=Brucella abortus (str... [more]

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Properties
Property NameValue
Genbank descriptionC31009H04EF AbioticL1 Citrus clementina cDNA clone C31009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869225 ID=FC869225; Name=FC869225; organism=Citrus clementina; type=EST; length=756bp
GGAAACCAAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTC
TTCTTTCATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGAT
ACTGGGCAGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAG
CAGCTTCTTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGC
TATCCAGGGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGAC
TCCGTCTTTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAG
CCTCTGCTGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGA
GGAAGCCCTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCAT
GGCTTTGCATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAA
TAAAGACAACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGT
GGGAAGGGCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCA
AATTGACATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAG
AGAAGACCATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCA
TTTATTTCGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCAGGAAGCAT
TGTTGGTACTGCTTCACTTAGAAGAAGTCTCAAATACTCCATAGATATCC
ATCATT
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