FC869225

Overview
NameFC869225
Unique NameFC869225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_PAEMA (Porphobilinogen deaminase OS=Paenibacillus macerans GN=hemC PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.080e-20
Identity = 61/137 (44.53%), Postives = 80/137 (58.39%), Query Frame = 3
Query:  318 TKVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRS 728
            TK  I+ +GTR S LAL Q  +    L  L          +I  I T GD+IL   L+ IGGKGLF KEI++A+++ +ID+AVHSMKD+P+ LPE  I      R+D RDA I          P G+ VGT++LRRS
Sbjct:    2 TKRTIV-VGTRQSQLALTQTEQVIGDLKELCRAHGLPFEFEIKKIVTKGDRILDVTLSKIGGKGLFVKEIEQAMLDGEIDMAVHSMKDMPSVLPEGLINGGVPLRKDPRDALISRSGLHLHELPQGARVGTSTLRRS 137          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_GEOTN (Porphobilinogen deaminase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=hemC PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.080e-20
Identity = 57/142 (40.14%), Postives = 81/142 (57.04%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRS---LKYSIDI 749
            I +G+R S LAL Q +   N+L  L      E    +  I T GD++L   L+ +GGKGLF KEI+  ++   ID+AVHSMKD+P  LP   ++    +REDVRD  +          P+G+++GT+SLRRS   L Y  D+
Sbjct:    4 IVVGSRRSKLALTQTNWVINELKRLGAPFTFE----VKEIVTKGDRVLDVTLSKVGGKGLFVKEIEHEMLTGGIDMAVHSMKDMPAVLPSGLVIGSVPRREDVRDVLVSKGNLSLSDLPSGAVIGTSSLRRSAQLLAYRPDV 141          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_UNCMA (Probable porphobilinogen deaminase OS=Uncultured methanogenic archaeon RC-I GN=hemC PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.635e-20
Identity = 54/132 (40.91%), Postives = 75/132 (56.82%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRS 728
            +RIGTRGS LALAQA + R  L     E        I +IKT+GD     PL  + G G F +EID+ L+ +++D+AVHS+KD+PT  PE  +    L+RE   D  +          P G++VGT+S RR+
Sbjct:    1 MRIGTRGSKLALAQAEKVRRLLKEQGVEAT------ITVIKTSGDVQKDSPLYMMKGYGAFVREIDDLLLKNEVDLAVHSLKDIPTVRPENLVTAAVLKRESALDVAVIRNAERLADLPEGAVVGTSSTRRA 126          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_BREBN (Porphobilinogen deaminase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=hemC PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.635e-20
Identity = 57/141 (40.43%), Postives = 81/141 (57.45%), Query Frame = 3
Query:  336 RIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRS---LKYSIDI 749
            ++GTR S LAL Q +   +KL    PE       ++  I T GD+IL   L+ +GGKGLF KEI+++L + + D AVHS+KD+P  LP+  ++    +R D RD  +          P G++VGT+SLRRS   L Y  DI
Sbjct:    5 KVGTRRSKLALTQTNWVVDKLKGFAPE----ADFELHEIVTKGDRILDVTLSKVGGKGLFVKEIEQSLFDKETDFAVHSLKDMPAELPDGLVIGAIPKRVDPRDVLLSKDGKTLDELPQGALVGTSSLRRSSQILAYRPDI 141          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_PROMA (Porphobilinogen deaminase OS=Prochlorococcus marinus GN=hemC PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.665e-20
Identity = 58/134 (43.28%), Postives = 78/134 (58.21%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI---XXXXXXXXXXPAGSIVGTASLRR 725
            +RI +R S LA+ Q +  + +L    P +     I I  + T GDKIL   LA IG KGLFTKE++  ++  + DIAVHS+KD+PT LPE  +L C  +RED  DA +             P GS+VGT+SLRR
Sbjct:    6 VRIASRRSQLAMVQTNWVKEELEKACPSID----ISIEAMATQGDKILDVALAKIGDKGLFTKELEAQMLIGRADIAVHSLKDLPTNLPEGLMLGCITKREDPADALVVNKKYKNYQLNDLPEGSVVGTSSLRR 135          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_NEIMB (Porphobilinogen deaminase OS=Neisseria meningitidis serogroup B GN=hemC PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.665e-20
Identity = 54/129 (41.86%), Postives = 81/129 (62.79%), Query Frame = 3
Query:  339 IGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            I +R S LA+ QA   + +L AL+P+      ++I+ + T GD+IL + L+ +GGKGLF KE+++AL + + D+AVHS+KDVP  LPE   L    +R +  DAF+          P G++VGT+SLRR
Sbjct:    8 IASRESLLAMWQAKHIQGRLKALYPDCE----VEILGMTTRGDQILDKTLSKVGGKGLFVKELEQALYDGRADLAVHSIKDVPMDLPEGFALAAIGERANPFDAFVSNQYTRLEEMPEGAVVGTSSLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_NEIMA (Porphobilinogen deaminase OS=Neisseria meningitidis serogroup A GN=hemC PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.665e-20
Identity = 54/129 (41.86%), Postives = 81/129 (62.79%), Query Frame = 3
Query:  339 IGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            I +R S LA+ QA   + +L AL+P+      ++I+ + T GD+IL + L+ +GGKGLF KE+++AL + + D+AVHS+KDVP  LPE   L    +R +  DAF+          P G++VGT+SLRR
Sbjct:    8 IASRESLLAMWQAKHIQGRLKALYPDCE----VEILGMTTRGDQILDKTLSKVGGKGLFVKELEQALYDGRADLAVHSIKDVPMDLPEGFALAAIGERANPFDAFVSNQYARLEEMPEGAVVGTSSLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_DESRM (Porphobilinogen deaminase OS=Desulfotomaculum reducens (strain MI-1) GN=hemC PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.665e-20
Identity = 56/131 (42.75%), Postives = 78/131 (59.54%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            I +G+R S LAL Q      +L   +P++  E    I  +KT GDK+L   LA IG KGLFTKE++ A++  +ID AVHS+KD+PT LPE  I+    +R++  DA I          P G+ +GT+SLRR
Sbjct:    5 ITVGSRDSALALWQTRWVVEQLEKQNPDVTFE----ITTMKTKGDKMLDVALAKIGDKGLFTKELEVAMLQKEIDFAVHSLKDMPTALPEGLIIGAVCKRDNPGDALISKDGRKLDELPKGARIGTSSLRR 131          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_CLOD6 (Porphobilinogen deaminase OS=Clostridium difficile (strain 630) GN=hemC PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.132e-19
Identity = 60/135 (44.44%), Postives = 78/135 (57.78%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI-XXXXXXXXXXPAGSIVGTASLRRSLK 734
            I +GTRGS LAL Q     N+L   +PE++ E    I IIKT GD I +  L  IG KGLF KEI++ L++ +IDIAVHSMKD+P+YL          +RED RD  I           P G+++GT S RR  +
Sbjct:    3 IVVGTRGSNLALIQTEWVINELKKKYPEISFE----IKIIKTKGDLIQNVSLDKIGDKGLFVKEIEQQLLDGKIDIAVHSMKDMPSYLANGLKFAHTPKREDPRDVLILREGYKNLDDLPHGAVIGTGSKRRKFQ 133          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_XANOR (Porphobilinogen deaminase OS=Xanthomonas oryzae pv. oryzae GN=hemC PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.478e-19
Identity = 56/131 (42.75%), Postives = 74/131 (56.49%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +RI TR SPLAL Q+      L   HP L     + +V + T GD++L + LA IG KGLF KE++ A++    D AVHS KDVP  L +  +LP  L+R D  DA +          P G+ VGT+SLRR
Sbjct:    4 LRIATRKSPLALWQSEHVAAALRQHHPGLE----VVLVPMSTRGDEVLDRSLAAIGDKGLFLKELELAMLRGDADCAVHSFKDVPMELDDPFVLPAILERGDPADALVSNLYASLQALPLGARVGTSSLRR 130          
The following BLAST results are available for this feature:
BLAST of FC869225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 460
Match NameE-valueIdentityDescription
HEM3_PAEMA5.080e-2044.53Porphobilinogen deaminase OS=Paenibacillus maceran... [more]
HEM3_GEOTN5.080e-2040.14Porphobilinogen deaminase OS=Geobacillus thermoden... [more]
HEM3_UNCMA6.635e-2040.91Probable porphobilinogen deaminase OS=Uncultured m... [more]
HEM3_BREBN6.635e-2040.43Porphobilinogen deaminase OS=Brevibacillus brevis ... [more]
HEM3_PROMA8.665e-2043.28Porphobilinogen deaminase OS=Prochlorococcus marin... [more]
HEM3_NEIMB8.665e-2041.86Porphobilinogen deaminase OS=Neisseria meningitidi... [more]
HEM3_NEIMA8.665e-2041.86Porphobilinogen deaminase OS=Neisseria meningitidi... [more]
HEM3_DESRM8.665e-2042.75Porphobilinogen deaminase OS=Desulfotomaculum redu... [more]
HEM3_CLOD61.132e-1944.44Porphobilinogen deaminase OS=Clostridium difficile... [more]
HEM3_XANOR1.478e-1942.75Porphobilinogen deaminase OS=Xanthomonas oryzae pv... [more]

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Properties
Property NameValue
Genbank descriptionC31009H04EF AbioticL1 Citrus clementina cDNA clone C31009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869225 ID=FC869225; Name=FC869225; organism=Citrus clementina; type=EST; length=756bp
GGAAACCAAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTC
TTCTTTCATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGAT
ACTGGGCAGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAG
CAGCTTCTTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGC
TATCCAGGGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGAC
TCCGTCTTTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAG
CCTCTGCTGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGA
GGAAGCCCTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCAT
GGCTTTGCATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAA
TAAAGACAACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGT
GGGAAGGGCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCA
AATTGACATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAG
AGAAGACCATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCA
TTTATTTCGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCAGGAAGCAT
TGTTGGTACTGCTTCACTTAGAAGAAGTCTCAAATACTCCATAGATATCC
ATCATT
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