FC869225

Overview
NameFC869225
Unique NameFC869225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_CAMJE (Porphobilinogen deaminase OS=Campylobacter jejuni GN=hemC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.293e-19
Identity = 54/133 (40.60%), Postives = 75/133 (56.39%), Query Frame = 3
Query:  339 IGTRGSPLALAQAHETRNKLMALHP-ELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRSLK 734
            I TR S LAL Q+      L   H  E+  EG       KT GD +L  PLA IGGKGLFTKE++E+++  +  +AVHS+KDVP++ P+  +L    +RE   DA +          P G+ +GT SLRR ++
Sbjct:    5 IATRKSQLALWQSEHVAQILKNTHQIEVLLEG------FKTKGDVLLDSPLAKIGGKGLFTKELEESMLRKEAHLAVHSLKDVPSFFPQGLVLAAVSKREQSNDAMLSQNYKDFLSLPKGAKIGTTSLRRKMQ 131          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_THENV (Probable porphobilinogen deaminase OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=hemC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.300e-19
Identity = 52/132 (39.39%), Postives = 79/132 (59.85%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRS 728
            IR+ TRGS L+L Q  E   ++ A+ P++  E    IV++KTTGD I  +PL  IG KG+F KE++ A++  + D+AVHS+KD+P+ L     L    +R    DA +          P G++VGT+S+RR+
Sbjct:    3 IRVATRGSKLSLIQTEELLAQIKAVEPDIRFE----IVVVKTTGDLIQDKPLFQIGVKGVFEKEVNLAVLRGEADMAVHSLKDLPSDLTPGLALAGYSRRAPPNDALVSPRGYTLETLPRGAVVGTSSVRRA 130          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_PROM9 (Porphobilinogen deaminase OS=Prochlorococcus marinus (strain MIT 9312) GN=hemC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.300e-19
Identity = 59/134 (44.03%), Postives = 77/134 (57.46%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI---XXXXXXXXXXPAGSIVGTASLRR 725
            ++I +R S LA+ Q    +++L    P L     + I  + T GDKIL   LA IG KGLFTKE++  ++  Q DIAVHS+KD+PT LP    L C  +RED  DA +             PAGSIVGT+SLRR
Sbjct:    6 LKIASRRSKLAMVQTLWVKDQLEKNIPNLE----VSIEAMATQGDKILDVALAKIGDKGLFTKELEAQMLVGQADIAVHSLKDLPTNLPSGLKLGCITKREDPADALVVSKKNDCYKLETLPAGSIVGTSSLRR 135          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_MOOTA (Porphobilinogen deaminase OS=Moorella thermoacetica (strain ATCC 39073) GN=hemC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.300e-19
Identity = 58/131 (44.27%), Postives = 76/131 (58.02%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            I++G+R S LA  QA      L    P L+     ++V +KT GDKIL   LA IG KGLFTKE++ AL++  ID+AVHSMKD+PT LPE  ++     RED  D  +          P  + VGT+SLRR
Sbjct:    4 IKVGSRESELARWQARWVIQALEKAWPGLS----CRLVTLKTKGDKILDVALARIGDKGLFTKELELALLDGAIDLAVHSMKDMPTTLPEGLVIGAIGPREDPADVLVSPEGYTLATLPIKARVGTSSLRR 130          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_DEBHA (Porphobilinogen deaminase OS=Debaryomyces hansenii GN=HEM3 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.300e-19
Identity = 55/140 (39.29%), Postives = 82/140 (58.57%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINS-----QIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI---XXXXXXXXXXPAGSIVGTASLRRS 728
            ++IG R S LA+ Q+   +  ++   PEL+      ++ + T GDK+ S+PL   GGK L+TKE++  L+       ++D+ VHS+KD+PT LPE+  L C L RED RDA +             P GS+VGT+S+RRS
Sbjct:   19 VQIGGRKSKLAVVQSEIVKECIVEKFPELS----CSVLALSTLGDKVQSKPLYSFGGKALWTKELEILLLEQVEEYPRLDLIVHSLKDIPTNLPEEFELGCILNREDARDALVMKSGSSYKSLADLPDGSLVGTSSVRRS 154          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_CAMJD (Porphobilinogen deaminase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=hemC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.300e-19
Identity = 54/133 (40.60%), Postives = 75/133 (56.39%), Query Frame = 3
Query:  339 IGTRGSPLALAQAHETRNKLMALHP-ELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRSLK 734
            I TR S LAL Q+      L   H  E+  EG       KT GD +L  PLA IGGKGLFTKE++E+++  +  +AVHS+KDVP++ P+  +L    +RE   DA +          P G+ +GT SLRR ++
Sbjct:    5 IATRKSQLALWQSEHVAQILKNTHQIEVLLEG------FKTKGDVLLDSPLAKIGGKGLFTKELEESMLRKEAHLAVHSLKDVPSFFPQGLVLAAVSKREQSTDAMLSQNYKDFLSLPKGAKIGTTSLRRKMQ 131          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_BACCN (Porphobilinogen deaminase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=hemC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.300e-19
Identity = 58/132 (43.94%), Postives = 79/132 (59.85%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRS 728
            I +G+R S LAL Q +   ++L AL   L  E  ++ ++ K  GD IL   L+ +GGKGLF KEI+ AL+  +ID+AVHSMKD+P  LP    + C  +R D RDAFI            G+ +GT+SLRRS
Sbjct:    4 IIVGSRKSKLALTQTNWFIDQLQALG--LPYEFEVKEIVTK--GDVILDVTLSKVGGKGLFVKEIEHALLTKEIDMAVHSMKDMPAVLPAGLTIGCIPKRVDPRDAFISKNGKSFKELAKGATLGTSSLRRS 131          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_NITMS (Probable porphobilinogen deaminase OS=Nitrosopumilus maritimus (strain SCM1) GN=hemC PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.617e-19
Identity = 55/134 (41.04%), Postives = 77/134 (57.46%), Query Frame = 3
Query:  339 IGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRSLKYS 740
            +G RGS L++AQ +    +L   HP+   E    I  I T GD   S+PL  I  KG+F KEID A+   ++D AVHS+KDVP+ L +  +L C  +RE V D FI            GS++GT+SLRR+++ S
Sbjct:    5 VGARGSQLSVAQTNLVIAELKKAHPDTEYE----IKTITTKGDTD-SRPLFTIDQKGIFEKEIDRAVAQKEVDFAVHSLKDVPSELDDNLVLACIPKRETVNDVFISPDGSTLDSIKPGSVIGTSSLRRAVQVS 133          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_MYCGI (Porphobilinogen deaminase OS=Mycobacterium gilvum (strain PYR-GCK) GN=hemC PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.617e-19
Identity = 55/132 (41.67%), Postives = 79/132 (59.85%), Query Frame = 3
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +IRIGTRGS LA  QA   R+ L+A   +       ++VII T GD+   +P+ADIG  G+FT  + EA+ ++ +D AVHS KD+PT +  + ++     RED RDA +          PAGS++GT+S RR
Sbjct:    1 MIRIGTRGSLLATTQAGTIRDALIAAGHDA------ELVIISTEGDRRADEPIADIG-VGVFTAALREAIADNVVDAAVHSYKDLPTAVDPRFMIAATPVREDARDALVARDGMVLGELPAGSVIGTSSPRR 125          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_HUMAN (Porphobilinogen deaminase OS=Homo sapiens GN=HMBS PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.617e-19
Identity = 58/148 (39.19%), Postives = 81/148 (54.73%), Query Frame = 3
Query:  321 KVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI---XXXXXXXXXXPAGSIVGTASLRRSLKYSIDIHH 755
            K+ +IR+GTR S LA  Q       L A +P L  E    I+ + TTGDKIL   L+ IG K LFTKE++ AL  +++D+ VHS+KD+PT LP    +    +RE+  DA +             P  S+VGT+SLRR+ +      H
Sbjct:   17 KMRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFE----IIAMSTTGDKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPHDAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPH 160          
The following BLAST results are available for this feature:
BLAST of FC869225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 460
Match NameE-valueIdentityDescription
HEM3_CAMJE3.293e-1940.60Porphobilinogen deaminase OS=Campylobacter jejuni ... [more]
HEM3_THENV4.300e-1939.39Probable porphobilinogen deaminase OS=Thermoproteu... [more]
HEM3_PROM94.300e-1944.03Porphobilinogen deaminase OS=Prochlorococcus marin... [more]
HEM3_MOOTA4.300e-1944.27Porphobilinogen deaminase OS=Moorella thermoacetic... [more]
HEM3_DEBHA4.300e-1939.29Porphobilinogen deaminase OS=Debaryomyces hansenii... [more]
HEM3_CAMJD4.300e-1940.60Porphobilinogen deaminase OS=Campylobacter jejuni ... [more]
HEM3_BACCN4.300e-1943.94Porphobilinogen deaminase OS=Bacillus cereus subsp... [more]
HEM3_NITMS5.617e-1941.04Probable porphobilinogen deaminase OS=Nitrosopumil... [more]
HEM3_MYCGI5.617e-1941.67Porphobilinogen deaminase OS=Mycobacterium gilvum ... [more]
HEM3_HUMAN5.617e-1939.19Porphobilinogen deaminase OS=Homo sapiens GN=HMBS ... [more]

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Properties
Property NameValue
Genbank descriptionC31009H04EF AbioticL1 Citrus clementina cDNA clone C31009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869225 ID=FC869225; Name=FC869225; organism=Citrus clementina; type=EST; length=756bp
GGAAACCAAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTC
TTCTTTCATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGAT
ACTGGGCAGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAG
CAGCTTCTTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGC
TATCCAGGGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGAC
TCCGTCTTTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAG
CCTCTGCTGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGA
GGAAGCCCTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCAT
GGCTTTGCATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAA
TAAAGACAACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGT
GGGAAGGGCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCA
AATTGACATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAG
AGAAGACCATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCA
TTTATTTCGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCAGGAAGCAT
TGTTGGTACTGCTTCACTTAGAAGAAGTCTCAAATACTCCATAGATATCC
ATCATT
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