FC869225

Overview
NameFC869225
Unique NameFC869225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_CAMJ8 (Porphobilinogen deaminase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=hemC PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.617e-19
Identity = 54/133 (40.60%), Postives = 74/133 (55.64%), Query Frame = 3
Query:  339 IGTRGSPLALAQAHETRNKLMALHP-ELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRSLK 734
            I TR S LAL Q+      L   H  E+  EG       KT GD +L  PLA IGGKGLFTKE++E+++  +  +AVHS+KDVP++ P   +L    +RE   DA +          P G+ +GT SLRR ++
Sbjct:    5 IATRKSQLALWQSEHVAQILKNTHQIEVLLEG------FKTKGDVLLDSPLAKIGGKGLFTKELEESMLRKEAHLAVHSLKDVPSFFPRGLVLAAVSKREQSNDAMLSQNYKDFLSLPKGAKIGTTSLRRKMQ 131          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_SYNY3 (Porphobilinogen deaminase OS=Synechocystis sp. (strain PCC 6803) GN=hemC PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.335e-19
Identity = 53/141 (37.59%), Postives = 80/141 (56.74%), Query Frame = 3
Query:  312 VETKVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI---XXXXXXXXXXPAGSIVGTASLRR 725
            V T    +RIG+R S LAL Q +  + +L    P+        +  ++T GDKIL   LA IG KGLFT+E+++ ++  + D+AVHS+KD+PT LP   +L C  +R +  DA +             P G+++GT+SLRR
Sbjct:    3 VSTSAPTVRIGSRKSQLALVQTYWVQEELQKHFPDRQ----FDVETMETQGDKILDVALAKIGDKGLFTQELEDGMLGKRTDLAVHSLKDLPTNLPAGLMLGCVTKRVNPADALVLNAKHQGKDLASLPEGAVIGTSSLRR 139          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_NATTJ (Porphobilinogen deaminase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=hemC PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.335e-19
Identity = 55/131 (41.98%), Postives = 77/131 (58.78%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +RIGTR S LAL Q +    +L   +P++     I+I  I+T GD++L+  L+ +GGKGLF KEI  AL+  +ID+AVHSMKD+PT   E   +    +R D  DA I          P  + +GT+SLRR
Sbjct:    3 LRIGTRRSQLALDQTNWVVEQLKTHYPDIE----IEIKKIETKGDQLLNVSLSKVGGKGLFLKEIQNALLQGEIDLAVHSMKDIPTETTEDLEICAITKRVDPLDALISNNDITIDELPENAKIGTSSLRR 129          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_LISIN (Porphobilinogen deaminase OS=Listeria innocua GN=hemC PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.335e-19
Identity = 54/132 (40.91%), Postives = 78/132 (59.09%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRS 728
            I +G+R S LAL Q++    KL   +PE+  E    I  I T GD+IL   L+ +GGKGLF  E+++AL +  ID AVHSMKDVP+ L +  ++    +RE   D F+          P G+++GT+SLRR+
Sbjct:    5 IIVGSRRSKLALTQSNWVIKKLKENYPEIDFE----IKEIVTKGDRILDVTLSKVGGKGLFVSEVEQALSDEVIDFAVHSMKDVPSSLKDGLVIGAIPKRESPLDCFVFNEVSTLDDLPKGAVIGTSSLRRA 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_EXIS2 (Porphobilinogen deaminase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=hemC PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.335e-19
Identity = 58/134 (43.28%), Postives = 75/134 (55.97%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGA---IQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            I +G+R S LA+ Q             +L Q GA    +I  I T GD+IL   L+ +GGKGLF KEI++ +I+  ID AVHSMKD+P+ LP   I+     R D RDA I          P G+IVGT+SLRR
Sbjct:    4 IIVGSRSSKLAMTQTKWVIE-------QLKQAGAPYEFEIKNIITKGDRILDVTLSKVGGKGLFVKEIEQQMIDEDIDFAVHSMKDLPSELPTGLIIGATPSRVDARDALITTTGGGLDSLPEGAIVGTSSLRR 130          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_METBU (Probable porphobilinogen deaminase OS=Methanococcoides burtonii (strain DSM 6242) GN=hemC PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.580e-19
Identity = 52/141 (36.88%), Postives = 79/141 (56.03%), Query Frame = 3
Query:  339 IGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRS---LKYSIDIH 752
            +GTRGS LA+AQA      L     EL +       +IKT+GD    +PL ++ G G+F +E+D+ +I  ++DIAVHSMKD+PT  P +  +   L+R+   D  +          P G+I+GT S+RR    L+Y  D++
Sbjct:    3 LGTRGSALAIAQADLVTKMLEEKGHELTRN------VIKTSGDVFTDRPLHEVAGVGVFVRELDDRMIEGEVDIAVHSMKDLPTVRPPELAIAAVLKRDSPYDVLLTADGSTLDELPDGAIIGTTSMRRRAQLLRYRPDLN 137          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_PROM5 (Porphobilinogen deaminase OS=Prochlorococcus marinus (strain MIT 9515) GN=hemC PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.251e-18
Identity = 58/134 (43.28%), Postives = 77/134 (57.46%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI---XXXXXXXXXXPAGSIVGTASLRR 725
            ++I +R S LA+ Q    + +L    P L     + I  + T GDKIL   LA IG KGLFTKE++  ++  + DIAVHS+KD+PT LP+   L C  +RED  DA +             PAGSIVGT+SLRR
Sbjct:    6 LKIASRRSKLAMVQTLWVKEQLEKNIPNLE----VSIESMATQGDKILDVALAKIGDKGLFTKELEAQMLIGKADIAVHSLKDLPTNLPDGLKLGCITKREDPSDALVVNKKNEIYQLESLPAGSIVGTSSLRR 135          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_PROMP (Porphobilinogen deaminase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=hemC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.634e-18
Identity = 57/134 (42.54%), Postives = 76/134 (56.72%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI---XXXXXXXXXXPAGSIVGTASLRR 725
            ++I +R S LA+ Q    + +L    P+L     + I  + T GDKIL   LA IG KGLFTKE++  ++    DIAVHS+KD+PT LP+   L C  +RED  DA +             P GSIVGT+SLRR
Sbjct:    6 LKIASRRSKLAMVQTLWVKEQLEKNIPDLE----VSIEAMATQGDKILDVALAKIGDKGLFTKELEAQMLVGHADIAVHSLKDLPTNLPDGLTLGCITKREDPSDALVVNKKNKIYQLESLPPGSIVGTSSLRR 135          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_RUBXD (Porphobilinogen deaminase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=hemC PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.134e-18
Identity = 54/129 (41.86%), Postives = 75/129 (58.14%), Query Frame = 3
Query:  339 IGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +GTRGSPLALAQA      L A         A+++  I+TT D+    PL+ I  + +FT+++DEAL+  ++D+AVHSMKDVPT +PE  +L     R D  DA +          P G+ V T+SLRR
Sbjct:    7 LGTRGSPLALAQAEACAAGLRAAG------FAVELRRIRTTSDRRPDDPLSVIDQRDVFTRQLDEALLAGEVDLAVHSMKDVPTEVPEGIVLAAVAGRADPSDALVSEGGWGVDGLPEGARVATSSLRR 129          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_HALSA (Probable porphobilinogen deaminase OS=Halobacterium salinarium GN=hemC PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.134e-18
Identity = 50/131 (38.17%), Postives = 75/131 (57.25%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IR+ TRGS LAL QA E  + L     +      +++V ++T GD++    ++D+G  G F + +D+ ++   +D AVHSMKDVPT +PE  ++     RE+  D  +          PAGS+VGTASLRR
Sbjct:    6 IRLATRGSDLALRQAGEVVDTLEDRRHD------VELVEVETEGDRVTDALISDLGKTGAFVRALDQEVMEGTVDAAVHSMKDVPTEVPEDLVVAAVPHRENPADVLVTPDGTDLEDLPAGSVVGTASLRR 130          
The following BLAST results are available for this feature:
BLAST of FC869225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 460
Match NameE-valueIdentityDescription
HEM3_CAMJ85.617e-1940.60Porphobilinogen deaminase OS=Campylobacter jejuni ... [more]
HEM3_SYNY37.335e-1937.59Porphobilinogen deaminase OS=Synechocystis sp. (st... [more]
HEM3_NATTJ7.335e-1941.98Porphobilinogen deaminase OS=Natranaerobius thermo... [more]
HEM3_LISIN7.335e-1940.91Porphobilinogen deaminase OS=Listeria innocua GN=h... [more]
HEM3_EXIS27.335e-1943.28Porphobilinogen deaminase OS=Exiguobacterium sibir... [more]
HEM3_METBU9.580e-1936.88Probable porphobilinogen deaminase OS=Methanococco... [more]
HEM3_PROM51.251e-1843.28Porphobilinogen deaminase OS=Prochlorococcus marin... [more]
HEM3_PROMP1.634e-1842.54Porphobilinogen deaminase OS=Prochlorococcus marin... [more]
HEM3_RUBXD2.134e-1841.86Porphobilinogen deaminase OS=Rubrobacter xylanophi... [more]
HEM3_HALSA2.134e-1838.17Probable porphobilinogen deaminase OS=Halobacteriu... [more]

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Properties
Property NameValue
Genbank descriptionC31009H04EF AbioticL1 Citrus clementina cDNA clone C31009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869225 ID=FC869225; Name=FC869225; organism=Citrus clementina; type=EST; length=756bp
GGAAACCAAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTC
TTCTTTCATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGAT
ACTGGGCAGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAG
CAGCTTCTTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGC
TATCCAGGGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGAC
TCCGTCTTTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAG
CCTCTGCTGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGA
GGAAGCCCTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCAT
GGCTTTGCATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAA
TAAAGACAACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGT
GGGAAGGGCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCA
AATTGACATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAG
AGAAGACCATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCA
TTTATTTCGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCAGGAAGCAT
TGTTGGTACTGCTTCACTTAGAAGAAGTCTCAAATACTCCATAGATATCC
ATCATT
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