FC869225

Overview
NameFC869225
Unique NameFC869225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_CLOJO (Porphobilinogen deaminase OS=Clostridium josui GN=hemC PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.787e-18
Identity = 58/136 (42.65%), Postives = 81/136 (59.56%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILP--CNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRSLK 734
            IRIG+R S LA+ Q+    + +    P++     ++++ +KTTGDKIL + L  I GKGLF KE+D AL N+++DI VHS KD+P  L E   LP     +RED RDAFI            G  +G++SLRR L+
Sbjct:    4 IRIGSRDSKLAIIQSELIMSAIRKYDPDIE----LELITMKTTGDKILDKTLDKIEGKGLFVKELDNALYNNEVDITVHSYKDMP--LEENPELPVVALSKREDPRDAFILPQNGEN-----GEPIGSSSLRRQLQ 128          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_MOUSE (Porphobilinogen deaminase OS=Mus musculus GN=Hmbs PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.641e-18
Identity = 56/139 (40.29%), Postives = 79/139 (56.83%), Query Frame = 3
Query:  318 TKVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI---XXXXXXXXXXPAGSIVGTASLRR 725
            +K+ +IR+GTR S LA  Q       L AL+P +  E    I+ + TTGDKI+   L+ IG K LFTKE++ AL  +++D+ VHS+KDVPT LP    +    +R++  DA +             P  S VGT+SLRR
Sbjct:   16 SKMRVIRVGTRKSQLARIQTETVVAMLKALYPGIQFE----IIAMSTTGDKIVDTALSKIGEKSLFTKELENALEKNEVDLVVHSLKDVPTILPPGFTIGAICKRQNPCDAVVFHPKFIGKTLETLPEKSAVGTSSLRR 150          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_PYRCJ (Probable porphobilinogen deaminase OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=hemC PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.755e-18
Identity = 48/132 (36.36%), Postives = 79/132 (59.85%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRS 728
            IR+ TRGS L+L Q  E  +++ A+ P++  E    +V++KTTGD +  +PL  IG KG+F KE++ A++  + D+AVHS+KD+P+ L    ++    +R    D             P G++VGT+S+RR+
Sbjct:    3 IRVATRGSKLSLLQTQELLDQVKAVEPKVEFE----LVVVKTTGDVVQDRPLYQIGVKGIFEKEVNLAVLRGEADVAVHSLKDLPSELTPGLVIAGFSRRAPPYDVVASREGYSLYTLPKGAVVGTSSVRRA 130          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_CLOCE (Porphobilinogen deaminase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=hemC PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.755e-18
Identity = 56/140 (40.00%), Postives = 80/140 (57.14%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSI------VGTASLRRSLK 734
            IRIG+R S LA+ Q+      +    P++     ++++ +KTTGDKIL + L  IGGKGLF KE+D AL N+++DI VHS KD+P     K  +    +RED RDAF+          P G I      +G++S RR L+
Sbjct:    4 IRIGSRDSKLAIIQSEMVMAAIREFDPDIE----LELITMKTTGDKILDKTLDKIGGKGLFVKELDYALYNNEVDITVHSYKDMPLEDNPKLPVVALSKREDPRDAFV---------LPQGEIAENNEPIGSSSQRRQLQ 130          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_XYLFA (Porphobilinogen deaminase OS=Xylella fastidiosa GN=hemC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.210e-18
Identity = 55/132 (41.67%), Postives = 75/132 (56.82%), Query Frame = 3
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++RI TR S LA+ Q+     +L  L P+L     + +V + T GD+IL + LA IGGKGLF KE++ A++    D AVHS+KDVP  L    +L   L R+D  DA I          P G+ V T+SLRR
Sbjct:    3 LLRIATRKSLLAMWQSEYVAARLRMLRPDLD----VVLVPMSTRGDEILDRSLAAIGGKGLFLKELELAMLRGDADCAVHSLKDVPMDLEPPFMLAAVLSRDDPADALISNVYLSLESLPIGARVATSSLRR 130          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_PROMS (Porphobilinogen deaminase OS=Prochlorococcus marinus (strain AS9601) GN=hemC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.210e-18
Identity = 57/134 (42.54%), Postives = 75/134 (55.97%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI---XXXXXXXXXXPAGSIVGTASLRR 725
            ++I +R S LA+ Q    +++L    P L     + I  + T GDKIL   LA IG KGLFTKE++  ++    DIAVHS+KD+PT LP    L C  +RED  DA +             P GSIVGT+SLRR
Sbjct:    6 LKIASRRSKLAMVQTLWVKDQLEKNIPNLE----VSIEAMATQGDKILDVALAKIGDKGLFTKELEAQMLVGHADIAVHSLKDLPTNLPNGLKLGCITKREDPADALVVNKKNDCYKLENLPEGSIVGTSSLRR 135          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_PROM0 (Porphobilinogen deaminase OS=Prochlorococcus marinus (strain MIT 9301) GN=hemC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.210e-18
Identity = 57/134 (42.54%), Postives = 75/134 (55.97%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI---XXXXXXXXXXPAGSIVGTASLRR 725
            ++I +R S LA+ Q    +++L    P L     + I  + T GDKIL   LA IG KGLFTKE++  ++    DIAVHS+KD+PT LP    L C  +RED  DA +             P GSIVGT+SLRR
Sbjct:    6 LKIASRRSKLAMVQTLWVKDQLERNIPNLE----VSIEAMATQGDKILDVALAKIGDKGLFTKELEAQMLVGHADIAVHSLKDLPTNLPNGLKLGCITKREDPADALVVNKKNDCYKLETLPEGSIVGTSSLRR 135          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_XYLFM (Porphobilinogen deaminase OS=Xylella fastidiosa (strain M12) GN=hemC PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.110e-18
Identity = 55/132 (41.67%), Postives = 75/132 (56.82%), Query Frame = 3
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++RI TR S LA+ Q+     +L  L P+L     + +V + T GD+IL + LA IGGKGLF KE++ A++    D AVHS+KDVP  L    +L   L R+D  DA I          P G+ V T+SLRR
Sbjct:    3 LLRIATRKSLLAMRQSEYVAARLRMLCPDLD----VVLVPMSTRGDEILDRSLAAIGGKGLFLKELELAMLRGDADCAVHSLKDVPMDLEPPFMLAAVLSRDDPADALISNVYLSLESLPIGARVATSSLRR 130          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_PROM2 (Porphobilinogen deaminase OS=Prochlorococcus marinus (strain MIT 9215) GN=hemC PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.110e-18
Identity = 57/134 (42.54%), Postives = 75/134 (55.97%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI---XXXXXXXXXXPAGSIVGTASLRR 725
            ++I +R S LA+ Q    +++L    P L     + I  + T GDKIL   LA IG KGLFTKE++  ++    DIAVHS+KD+PT LP    L C  +RED  DA +             P GSIVGT+SLRR
Sbjct:    6 LKIASRRSKLAMVQTLWVKDQLERNIPNLD----VSIEAMATQGDKILDVALAKIGDKGLFTKELEAQMLVGHADIAVHSLKDLPTNLPNGLKLGCITKREDPADALVVSKKNDYYKLETLPEGSIVGTSSLRR 135          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_CYTH3 (Porphobilinogen deaminase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=hemC PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.059e-17
Identity = 60/133 (45.11%), Postives = 72/133 (54.14%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMA--LHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +RIGTRGS LAL QA      L    L P        QIVII TTGDKIL Q L+ IG KGLFT+E++E L    IDIAVHS KD+ T+L     +    +RE V D  +              I+GT+S RR
Sbjct:    5 VRIGTRGSKLALWQAEHVAACLQTKGLEP--------QIVIIDTTGDKILDQSLSKIGSKGLFTEELEEQLHAGTIDIAVHSAKDLQTHLKGGMYILAITERELVNDVLVSHKPIDTLKNNPDLIIGTSSTRR 129          
The following BLAST results are available for this feature:
BLAST of FC869225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 460
Match NameE-valueIdentityDescription
HEM3_CLOJO2.787e-1842.65Porphobilinogen deaminase OS=Clostridium josui GN=... [more]
HEM3_MOUSE3.641e-1840.29Porphobilinogen deaminase OS=Mus musculus GN=Hmbs ... [more]
HEM3_PYRCJ4.755e-1836.36Probable porphobilinogen deaminase OS=Pyrobaculum ... [more]
HEM3_CLOCE4.755e-1840.00Porphobilinogen deaminase OS=Clostridium celluloly... [more]
HEM3_XYLFA6.210e-1841.67Porphobilinogen deaminase OS=Xylella fastidiosa GN... [more]
HEM3_PROMS6.210e-1842.54Porphobilinogen deaminase OS=Prochlorococcus marin... [more]
HEM3_PROM06.210e-1842.54Porphobilinogen deaminase OS=Prochlorococcus marin... [more]
HEM3_XYLFM8.110e-1841.67Porphobilinogen deaminase OS=Xylella fastidiosa (s... [more]
HEM3_PROM28.110e-1842.54Porphobilinogen deaminase OS=Prochlorococcus marin... [more]
HEM3_CYTH31.059e-1745.11Porphobilinogen deaminase OS=Cytophaga hutchinsoni... [more]

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Properties
Property NameValue
Genbank descriptionC31009H04EF AbioticL1 Citrus clementina cDNA clone C31009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869225 ID=FC869225; Name=FC869225; organism=Citrus clementina; type=EST; length=756bp
GGAAACCAAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTC
TTCTTTCATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGAT
ACTGGGCAGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAG
CAGCTTCTTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGC
TATCCAGGGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGAC
TCCGTCTTTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAG
CCTCTGCTGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGA
GGAAGCCCTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCAT
GGCTTTGCATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAA
TAAAGACAACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGT
GGGAAGGGCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCA
AATTGACATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAG
AGAAGACCATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCA
TTTATTTCGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCAGGAAGCAT
TGTTGGTACTGCTTCACTTAGAAGAAGTCTCAAATACTCCATAGATATCC
ATCATT
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