FC869225

Overview
NameFC869225
Unique NameFC869225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_YARLI (Porphobilinogen deaminase OS=Yarrowia lipolytica GN=HEM3 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.967e-17
Identity = 54/146 (36.99%), Postives = 80/146 (54.79%), Query Frame = 3
Query:  315 ETKVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINS-----QIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI---XXXXXXXXXXPAGSIVGTASLRRS 728
            ++++  + +G R S LAL Q       L  +HP+ +      ++ + T GD++ S+PL    GK L+TKE++  L+       Q DI VHS+KD+PT LP+   L   L RED RDA +             PAGS+VGT+S+RRS
Sbjct:   13 QSELPKVFVGGRKSKLALVQTQHVAAMLKKVHPDYS----FPVLGLTTLGDQVQSKPLYSFDGKALWTKELETLLLEKVPGFDQQDIIVHSLKDMPTVLPDGCELGAILTREDPRDALVMAAGSPYKTLADLPAGSVVGTSSIRRS 154          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_CLOK1 (Porphobilinogen deaminase OS=Clostridium kluyveri (strain NBRC 12016) GN=hemC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.967e-17
Identity = 55/133 (41.35%), Postives = 78/133 (58.65%), Query Frame = 3
Query:  336 RIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRSLK 734
            RI TR S LAL Q     + L+AL  ++  E     V+I+T GD+ L   L  IGGKG+F K+I++ALI  +   AVHSMKD+P  L +   +     REDVRD FI          P G+++GT+S+RR+++
Sbjct:    4 RIATRKSKLALVQTDYVID-LLALKFKMQCEK----VLIRTEGDRKLDVSLDKIGGKGVFVKDIEKALIEKRAQAAVHSMKDMPNELLDLFEIIAMPVREDVRDVFISPEGIKFLDLPKGAVIGTSSIRRAVQ 131          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_FUSNN (Porphobilinogen deaminase OS=Fusobacterium nucleatum subsp. nucleatum GN=hemC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.171e-16
Identity = 58/135 (42.96%), Postives = 79/135 (58.52%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPL--ADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRSL 731
            I IG+RGS LALAQA+  +++L   +P L+ E    I  I T+GDK L      +DI  K  FTKEI++ L++ +IDIAVHSMKD+P    +  I      RED RD  +          P G+ VGT+SLRR++
Sbjct:    5 IIIGSRGSILALAQANLVKDRLQGNYPNLSFE----IKEIVTSGDKDLKSNWENSDISLKSFFTKEIEQELLDGEIDIAVHSMKDMPAVSAKSLICGAIPDREDPRDVLV-SKNGLLVTLPQGAKVGTSSLRRAM 134          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_ERWCH (Porphobilinogen deaminase (Fragment) OS=Erwinia chrysanthemi GN=hemC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.171e-16
Identity = 46/86 (53.49%), Postives = 60/86 (69.77%), Query Frame = 3
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVP 587
            I+RI TR SPLAL QAH  + +L A HP L     +++V + T G  +L  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKDVP
Sbjct:    5 ILRIATRQSPLALWQAHFVQQRLEACHPGLR----VELVPMVTRGXLLLDTPLAKVGGKGLFVKELELALLENRADIAVHSMKDVP 86          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_METMA (Probable porphobilinogen deaminase OS=Methanosarcina mazei GN=hemC PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.998e-16
Identity = 53/131 (40.46%), Postives = 72/131 (54.96%), Query Frame = 3
Query:  339 IGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADI-GGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRS 728
            IGTRGS LALAQ       L     E +      I IIKT+GD+   +PL  + GG G F +E+D+ ++  +IDIAVHSMKD+PT  P+       L+R+   D  +          P  SI+GT+SLRR+
Sbjct:    3 IGTRGSQLALAQTENVARLLKEKGVETS------IKIIKTSGDRFTDRPLHAVSGGVGAFVRELDDVMLAGEIDIAVHSMKDMPTIRPKAIPTVAVLKRDTPFDILLTYDGTPLDELPEQSIIGTSSLRRT 127          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_METAC (Probable porphobilinogen deaminase OS=Methanosarcina acetivorans GN=hemC PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.998e-16
Identity = 53/131 (40.46%), Postives = 72/131 (54.96%), Query Frame = 3
Query:  339 IGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADI-GGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRS 728
            IGTRGS LALAQ       L     E +      I IIKT+GD+   +PL  + GG G F +E+D+ ++  +IDIAVHSMKD+PT  PE       L+R+   D  +          P  +I+GT+SLRR+
Sbjct:    3 IGTRGSQLALAQTENVARLLKERGVETS------IKIIKTSGDRFTDRPLHAVSGGVGAFVRELDDVMLAGEIDIAVHSMKDMPTIRPEGLPTVAVLKRDTPFDILLTYDGTTLDELPEQAIIGTSSLRRT 127          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_CLOAB (Porphobilinogen deaminase OS=Clostridium acetobutylicum GN=hemC PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.998e-16
Identity = 51/132 (38.64%), Postives = 74/132 (56.06%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRS 728
            + I TR S LA  Q     N L   +   +++     ++++T GDKIL + LADIGGKGLF K+I+  L+  + D AVHSMKDVP  +P+   +     R DVRD F+            G+++GT+S RR+
Sbjct:    3 LTIATRKSKLAQVQTELIINVLKDKYGISSEK-----LLMETLGDKILDKSLADIGGKGLFIKDIERILLEDKADAAVHSMKDVPFEVPDMFEIAAVTLRVDVRDVFVSRDGTHFKDLKNGAVIGTSSNRRA 129          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_HYPBU (Probable porphobilinogen deaminase OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=hemC PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.407e-16
Identity = 50/133 (37.59%), Postives = 73/133 (54.89%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI--XXXXXXXXXXPAGSIVGTASLRR 725
            +R+ TRGS L++AQ       +  + P L  E    +VI+KT GD    +P   IGGKGLF KE++ A++  + DIAVHS+KDVP+ +    +L     R+   D  +            P+G+IVGT+S RR
Sbjct:    3 LRVATRGSKLSIAQTMIALEAIKRVEPSLEYE----LVIVKTRGDIHQDKPFTAIGGKGLFEKEVNLAVLEGRADIAVHSLKDVPSAISPGLVLAMTPPRDPPYDVLVVRGGKEKTIWDLPSGAIVGTSSARR 131          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_ACIC1 (Porphobilinogen deaminase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=hemC PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.450e-16
Identity = 49/135 (36.30%), Postives = 73/135 (54.07%), Query Frame = 3
Query:  324 VAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRS 728
            ++++R+GTR S LA AQ  E    L A          ++IV I++TGD+    PL +  G G+F  E+  AL+  ++D+ VHSMKD+PT    +  +    +R D RDA +          P G+IVGT S RR+
Sbjct:    7 LSVLRLGTRRSTLARAQTEEIAGALRAAGCR------VEIVGIQSTGDRHADVPLHEFAGSGVFVAELRAALLRGEVDVVVHSMKDLPTAEIPELAIAAIPRRADPRDALVTGAGCRLAELPTGAIVGTGSPRRA 135          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_CLOP1 (Porphobilinogen deaminase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=hemC PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.812e-16
Identity = 54/130 (41.54%), Postives = 74/130 (56.92%), Query Frame = 3
Query:  339 IGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRS 728
            I TR S LA  Q      K+M L  E     + +++++ T GD+ L   L  IGGKGLF KEI+ AL+N +   AVHSMKDVP  LP +  L    +RED+RDAF+            G+ +GT+S+RR+
Sbjct:    5 IATRKSKLAQVQTE----KVMELLKEKENVDSKKLLVM-TEGDRRLDVSLNKIGGKGLFVKEIELALLNKEAHGAVHSMKDVPFELPSEFELVAMPEREDIRDAFVSLNGSTLSNLRKGARIGTSSIRRA 129          
The following BLAST results are available for this feature:
BLAST of FC869225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 460
Match NameE-valueIdentityDescription
HEM3_YARLI8.967e-1736.99Porphobilinogen deaminase OS=Yarrowia lipolytica G... [more]
HEM3_CLOK18.967e-1741.35Porphobilinogen deaminase OS=Clostridium kluyveri ... [more]
HEM3_FUSNN1.171e-1642.96Porphobilinogen deaminase OS=Fusobacterium nucleat... [more]
HEM3_ERWCH1.171e-1653.49Porphobilinogen deaminase (Fragment) OS=Erwinia ch... [more]
HEM3_METMA1.998e-1640.46Probable porphobilinogen deaminase OS=Methanosarci... [more]
HEM3_METAC1.998e-1640.46Probable porphobilinogen deaminase OS=Methanosarci... [more]
HEM3_CLOAB1.998e-1638.64Porphobilinogen deaminase OS=Clostridium acetobuty... [more]
HEM3_HYPBU3.407e-1637.59Probable porphobilinogen deaminase OS=Hyperthermus... [more]
HEM3_ACIC14.450e-1636.30Porphobilinogen deaminase OS=Acidothermus cellulol... [more]
HEM3_CLOP15.812e-1641.54Porphobilinogen deaminase OS=Clostridium perfringe... [more]

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Properties
Property NameValue
Genbank descriptionC31009H04EF AbioticL1 Citrus clementina cDNA clone C31009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869225 ID=FC869225; Name=FC869225; organism=Citrus clementina; type=EST; length=756bp
GGAAACCAAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTC
TTCTTTCATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGAT
ACTGGGCAGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAG
CAGCTTCTTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGC
TATCCAGGGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGAC
TCCGTCTTTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAG
CCTCTGCTGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGA
GGAAGCCCTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCAT
GGCTTTGCATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAA
TAAAGACAACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGT
GGGAAGGGCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCA
AATTGACATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAG
AGAAGACCATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCA
TTTATTTCGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCAGGAAGCAT
TGTTGGTACTGCTTCACTTAGAAGAAGTCTCAAATACTCCATAGATATCC
ATCATT
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