FC869225

Overview
NameFC869225
Unique NameFC869225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_METBF (Probable porphobilinogen deaminase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=hemC PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.914e-16
Identity = 53/131 (40.46%), Postives = 71/131 (54.20%), Query Frame = 3
Query:  339 IGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIG-GKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRS 728
            IGTRGS LALAQA      L A   E +      + IIKT+GD+   +PL  +  G G F +E+DE ++  +IDIAVHSMKD+PT  P        L+R+   D  +             SI+GT+SLRR+
Sbjct:    3 IGTRGSQLALAQAETVARLLKAKGVETS------LKIIKTSGDRFTDRPLHAVSSGVGAFVRELDEVMLEGKIDIAVHSMKDMPTIRPPTLPTVAVLKRDTPFDLLLTYDGTPLDELSEQSIIGTSSLRRA 127          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_CLOPS (Porphobilinogen deaminase OS=Clostridium perfringens (strain SM101 / Type A) GN=hemC PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.691e-15
Identity = 53/130 (40.77%), Postives = 74/130 (56.92%), Query Frame = 3
Query:  339 IGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRS 728
            I TR S LA  Q      K+M L  +     + +++++ T GD+ L   L  IGGKGLF KEI+ AL+N +   AVHSMKDVP  LP +  L    +RED+RDAF+            G+ +GT+S+RR+
Sbjct:    5 IATRKSKLAQVQTE----KVMELLKKKENVDSKKLLVM-TEGDRRLDVSLNKIGGKGLFVKEIELALLNKEAHGAVHSMKDVPFELPSEFELVAMPEREDIRDAFVSLNGSTLSNLRKGARIGTSSIRRA 129          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_CLOPE (Porphobilinogen deaminase OS=Clostridium perfringens GN=hemC PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.209e-15
Identity = 51/130 (39.23%), Postives = 71/130 (54.62%), Query Frame = 3
Query:  339 IGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRS 728
            I TR S LA  Q  +    L       +++     +++ T GD+ L   L  IGGKGLF KEI+ AL+N +   AVHSMKDVP  LP +  L    +RED+RDAF+            G+ +GT+S+RR+
Sbjct:    5 IATRKSKLAQVQTEKVMELLKGKENVDSKK-----LLVMTEGDRRLDVSLNKIGGKGLFVKEIELALLNKEAHGAVHSMKDVPFELPSEFELVAMPEREDIRDAFVSLNGSTLSNLRKGARIGTSSIRRA 129          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_DEIGD (Porphobilinogen deaminase OS=Deinococcus geothermalis (strain DSM 11300) GN=hemC PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.885e-15
Identity = 53/132 (40.15%), Postives = 73/132 (55.30%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI-XXXXXXXXXXPAGSIVGTASLRR 725
            + +GTRGS LALAQ      +L    P+   +  IQ +  K   D+   Q LA  G KG + KEI++AL+  +IDIAVHS+KD+PT  PE   +    +R D RD  I           P+G+ VGT+S+RR
Sbjct:    4 VTVGTRGSALALAQTRWVVARLKEEWPDT--DFRIQTISTKGDRDRAALQSLAQKGDKGFWVKEIEDALLAGRIDIAVHSLKDLPTEQPEGLEIASIPKRVDARDVLIGKDGMKRLEDLPSGARVGTSSVRR 133          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_COXBU (Porphobilinogen deaminase OS=Coxiella burnetii GN=hemC PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.767e-15
Identity = 51/131 (38.93%), Postives = 74/131 (56.49%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            I I TR SPLAL QA   + ++   HP LA     QI+   T GD++ ++ L D GGK LF K++ +AL+N   DIAVHS+KD+      + ++   ++RED RD  I          P  +++GT+S RR
Sbjct:    7 ILIVTRKSPLALWQAEFVKQQIENSHPHLA----CQILGCTTQGDRLTTEKLVDSGGKDLFVKDLQKALLNRDADIAVHSIKDMSACDGPELMVGAFIRREDPRDVLI--VKGELSTLPPHAVIGTSSPRR 131          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_COXBR (Porphobilinogen deaminase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=hemC PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.767e-15
Identity = 51/131 (38.93%), Postives = 74/131 (56.49%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            I I TR SPLAL QA   + ++   HP LA     QI+   T GD++ ++ L D GGK LF K++ +AL+N   DIAVHS+KD+      + ++   ++RED RD  I          P  +++GT+S RR
Sbjct:    7 ILIVTRKSPLALWQAEFVKQQIENSHPHLA----CQILGCTTQGDRLTTEKLVDSGGKDLFVKDLQKALLNRDADIAVHSIKDMSACDGPELMVGAFIRREDPRDVLI--VKGELSTLPPHAVIGTSSPRR 131          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_COXBN (Porphobilinogen deaminase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=hemC PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.767e-15
Identity = 51/131 (38.93%), Postives = 74/131 (56.49%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            I I TR SPLAL QA   + ++   HP LA     QI+   T GD++ ++ L D GGK LF K++ +AL+N   DIAVHS+KD+      + ++   ++RED RD  I          P  +++GT+S RR
Sbjct:    7 ILIVTRKSPLALWQAEFVKQQIENSHPHLA----CQILGCTTQGDRLTTEKLVDSGGKDLFVKDLQKALLNRDADIAVHSIKDMSACDGPELMVGAFIRREDPRDVLI--VKGELSTLPPHAVIGTSSPRR 131          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_COXB2 (Porphobilinogen deaminase OS=Coxiella burnetii (strain CbuG_Q212) GN=hemC PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.767e-15
Identity = 51/131 (38.93%), Postives = 74/131 (56.49%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            I I TR SPLAL QA   + ++   HP LA     QI+   T GD++ ++ L D GGK LF K++ +AL+N   DIAVHS+KD+      + ++   ++RED RD  I          P  +++GT+S RR
Sbjct:    7 ILIVTRKSPLALWQAEFVKQQIENSHPHLA----CQILGCTTQGDRLTTEKLVDSGGKDLFVKDLQKALLNRDADIAVHSIKDMSACDGPELMVGAFIRREDPRDVLI--VKGELSTLPPHAVIGTSSPRR 131          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_COXB1 (Porphobilinogen deaminase OS=Coxiella burnetii (strain CbuK_Q154) GN=hemC PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.767e-15
Identity = 51/131 (38.93%), Postives = 74/131 (56.49%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            I I TR SPLAL QA   + ++   HP LA     QI+   T GD++ ++ L D GGK LF K++ +AL+N   DIAVHS+KD+      + ++   ++RED RD  I          P  +++GT+S RR
Sbjct:    7 ILIVTRKSPLALWQAEFVKQQIENSHPHLA----CQILGCTTQGDRLTTEKLVDSGGKDLFVKDLQKALLNRDADIAVHSIKDMSACDGPELMVGAFIRREDPRDVLI--VKGELSTLPPHAVIGTSSPRR 131          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_ALKOO (Porphobilinogen deaminase OS=Alkaliphilus oremlandii (strain OhILAs) GN=hemC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.426e-15
Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI 656
            IR+G+R S LA+ Q+      +    P +     I++V +KTTGD  L Q L  IGGKGLF KE+D+AL + ++DI VHS KD+P  + E   +    +RED RD  +
Sbjct:    3 IRVGSRESKLAVKQSEIVIEAIRKYDPNIE----IELVTMKTTGDIKLDQTLDKIGGKGLFIKELDQALYDDRVDITVHSFKDMPMAIDEYLPIVAVSKREDPRDVLV 106          
The following BLAST results are available for this feature:
BLAST of FC869225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 460
Match NameE-valueIdentityDescription
HEM3_METBF9.914e-1640.46Probable porphobilinogen deaminase OS=Methanosarci... [more]
HEM3_CLOPS1.691e-1540.77Porphobilinogen deaminase OS=Clostridium perfringe... [more]
HEM3_CLOPE2.209e-1539.23Porphobilinogen deaminase OS=Clostridium perfringe... [more]
HEM3_DEIGD2.885e-1540.15Porphobilinogen deaminase OS=Deinococcus geotherma... [more]
HEM3_COXBU3.767e-1538.93Porphobilinogen deaminase OS=Coxiella burnetii GN=... [more]
HEM3_COXBR3.767e-1538.93Porphobilinogen deaminase OS=Coxiella burnetii (st... [more]
HEM3_COXBN3.767e-1538.93Porphobilinogen deaminase OS=Coxiella burnetii (st... [more]
HEM3_COXB23.767e-1538.93Porphobilinogen deaminase OS=Coxiella burnetii (st... [more]
HEM3_COXB13.767e-1538.93Porphobilinogen deaminase OS=Coxiella burnetii (st... [more]
HEM3_ALKOO6.426e-1541.67Porphobilinogen deaminase OS=Alkaliphilus oremland... [more]

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Properties
Property NameValue
Genbank descriptionC31009H04EF AbioticL1 Citrus clementina cDNA clone C31009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869225 ID=FC869225; Name=FC869225; organism=Citrus clementina; type=EST; length=756bp
GGAAACCAAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTC
TTCTTTCATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGAT
ACTGGGCAGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAG
CAGCTTCTTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGC
TATCCAGGGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGAC
TCCGTCTTTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAG
CCTCTGCTGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGA
GGAAGCCCTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCAT
GGCTTTGCATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAA
TAAAGACAACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGT
GGGAAGGGCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCA
AATTGACATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAG
AGAAGACCATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCA
TTTATTTCGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCAGGAAGCAT
TGTTGGTACTGCTTCACTTAGAAGAAGTCTCAAATACTCCATAGATATCC
ATCATT
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