FC869225

Overview
NameFC869225
Unique NameFC869225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9484 contig Ccv1_Contig9484:1..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_THEVO (Probable porphobilinogen deaminase OS=Thermoplasma volcanium GN=hemC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.286e-12
Identity = 45/138 (32.61%), Postives = 75/138 (54.35%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR--SLKYS 740
            I+IGTR S LA+AQA+   + L A+  +       +IV  ++ GD     P+  IG  G+F ++++  ++  +ID+AVHS KD+P+ +  +  +   L+R    DA +          P  + VGT+S+RR   LKY+
Sbjct:    3 IKIGTRPSNLAVAQANMVASSLEAIGIDT------EIVKHRSAGDIDTKNPIYSIGKTGVFVQDLNNMILRGEIDVAVHSAKDIPSEIENRLTIAATLKRGSFNDALV--SKYDLRSLPISAKVGTSSIRRIFQLKYA 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_SCHPO (Porphobilinogen deaminase OS=Schizosaccharomyces pombe GN=hem3 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.985e-12
Identity = 47/135 (34.81%), Postives = 73/135 (54.07%), Query Frame = 3
Query:  339 IGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIG---GKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFI---XXXXXXXXXXPAGSIVGTASLRR 725
            IGTR S LA+ Q+   R +L   +P L       I+   T GD+ILS+ L +      K L+T+E++  L+ +Q  I VHS+KD+P+ +P+  ++ C  +R    DA +             P GS+VGT+S+RR
Sbjct:    9 IGTRKSKLAVIQSEIIREELEKHYPHLE----FPIISRDTIGDEILSKALFEFKRQLAKSLWTRELEALLVTNQCRILVHSLKDLPSEMPDGMVIACIPKRSCPLDAIVFKAGSHYKTVADLPPGSVVGTSSIRR 139          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_COREF (Porphobilinogen deaminase OS=Corynebacterium efficiens GN=hemC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12
Identity = 50/131 (38.17%), Postives = 71/131 (54.20%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +RIGTRGS LA  QA   R++L     +       ++ I+ T GD  +S P+  IG  G+FT+ + +AL+  +ID+AVHS KD+PT  P+         R D RDA I          P G+ VGT++ RR
Sbjct:    3 LRIGTRGSKLATTQAGHMRDRLKHFGRDA------ELTIVTTPGDVNMS-PVERIG-VGVFTQALRDALVADEIDVAVHSFKDLPT-APDPRFHLVVPTRADARDALIARDGLTLEELPEGAKVGTSAPRR 124          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_THEFY (Porphobilinogen deaminase OS=Thermobifida fusca (strain YX) GN=hemC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.685e-12
Identity = 45/131 (34.35%), Postives = 68/131 (51.91%), Query Frame = 3
Query:  336 RIGTRGSPLALAQAHETRNKLMALHPELAQEGA-IQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            R+GTR S +A  Q+      L A      + G  +++V+I + GD I    L  +GG G+F   + +AL+  +++ AVHS+KD+PT   E  +L    +R+D RDA            P G+ VGT S RR
Sbjct:    7 RLGTRRSTMATNQSRRVAEILTA------RTGVPVELVLITSFGD-ITRAHLTQLGGTGVFVSALRDALLAGEVEFAVHSLKDLPTAPTEGIVLAAVTERDDPRDALCARDGLKFADLPPGATVGTGSPRR 130          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_THEAC (Probable porphobilinogen deaminase OS=Thermoplasma acidophilum GN=hemC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.134e-11
Identity = 44/131 (33.59%), Postives = 67/131 (51.15%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IRIGTR S LA+ QA    + +     E      ++IV  ++ GD  L  PL  IG  G+F + ++  +++  ID AVHS KD+P  +  +  +   + R    DA +          P GS++GT+SLRR
Sbjct:    4 IRIGTRPSRLAVRQAEIVASAIRHAGYE------VEIVKYRSEGDSDLKSPLYSIGKTGVFVERLNSLILSGDIDAAVHSAKDIPYEIDRRLRISAVMPRGRFEDALV--SENPLSKLPPGSVIGTSSLRR 126          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_METS5 (Probable porphobilinogen deaminase OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=hemC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.134e-11
Identity = 50/132 (37.88%), Postives = 69/132 (52.27%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRS 728
            IRI  RGS L+L Q       L A   E       + + IKT  D   ++PL +IG KG+F KE++EA++  + DIAVHSMKD+ + LP    L    +RE+  D  +          P  S +GT SLRR+
Sbjct:    3 IRIAARGSKLSLKQVEIVTTYLQAKGYET------EFIEIKTKADLFGNKPLHEIG-KGVFEKEVNEAVLQGRADIAVHSMKDMSSELPPGLELLATPKRENPVDVLV--SELNLEELPEKSRIGTGSLRRA 125          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM31_STRAW (Porphobilinogen deaminase 1 OS=Streptomyces avermitilis GN=hemC1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.527e-11
Identity = 44/127 (34.65%), Postives = 67/127 (52.76%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTA 713
            +R+GTR S LA+AQ+ +  + +  +         +++V I T GD    + LA IGG G+F   + +AL+  ++D AVHS+KD+PT  P++  L     RED RD  +           A S  GTA
Sbjct:    6 LRLGTRRSKLAMAQSGQVADAVRQVTGR-----PVELVEITTYGDTS-REHLAQIGGTGVFVTALRDALLRGEVDFAVHSLKDLPTAQPDELALAAVPVREDPRDVLVARDGLTFEELGAPSPKGTA 126          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_CALS8 (Porphobilinogen deaminase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=hemC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.300e-11
Identity = 45/133 (33.83%), Postives = 68/133 (51.13%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRSL 731
            +RIG R S L+  Q      K+      L  E   + V IKT GD   ++ L D    G+F KEI+ AL++ +ID+AVHS+KD+P  +     +   ++RED RD  +             + +GT+SLRR +
Sbjct:    4 LRIGARDSKLSRIQVDIVARKIKQT---LGIE--CEFVPIKTKGDIDKTKSLKDFKSPGVFVKEIELALLSREIDLAVHSLKDLPCEMDSNFEIVAVVEREDPRDVLVSKDGVGFYQLKPNAKIGTSSLRREV 131          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_SULTO (Probable porphobilinogen deaminase OS=Sulfolobus tokodaii GN=hemC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11
Identity = 46/131 (35.11%), Postives = 70/131 (53.44%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IRI  RGS L+  Q     N L  L  E       + + IKT  D   ++PL+ +G KG+F KE+++A+++++ D+AVHSMKD+ T + E   +   L R+   D  I             SI+GT+S+RR
Sbjct:    3 IRIAARGSKLSRIQVMMVENYLHKLGIET------EFIEIKTKADLFQNEPLSKLG-KGVFEKEVNQAVLDNKADVAVHSMKDILTEISENLEIYAVLPRDPPFDILI--SRKNLFNLEPNSIIGTSSIRR 124          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_CORDI (Porphobilinogen deaminase OS=Corynebacterium diphtheriae GN=hemC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11
Identity = 50/133 (37.59%), Postives = 70/133 (52.63%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEK--TILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++IGTRGS LA  Q+   R+ L     EL        VI+ T GD  ++ P+  IG  G+FT+ + E L     DIAVHS KD+PT L  +   ++P   +R D RD  I          PAG+++GT + RR
Sbjct:    3 LKIGTRGSLLATTQSGHVRDDLRPYEAEL--------VIVTTHGDVNMA-PVERIG-VGVFTQALREELHTGGCDIAVHSFKDLPTELDPRFHLVVP---KRADFRDCLIARDGLSLADLPAGALIGTGAPRR 122          
The following BLAST results are available for this feature:
BLAST of FC869225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 460
Match NameE-valueIdentityDescription
HEM3_THEVO2.286e-1232.61Probable porphobilinogen deaminase OS=Thermoplasma... [more]
HEM3_SCHPO2.985e-1234.81Porphobilinogen deaminase OS=Schizosaccharomyces p... [more]
HEM3_COREF3.899e-1238.17Porphobilinogen deaminase OS=Corynebacterium effic... [more]
HEM3_THEFY8.685e-1234.35Porphobilinogen deaminase OS=Thermobifida fusca (s... [more]
HEM3_THEAC1.134e-1133.59Probable porphobilinogen deaminase OS=Thermoplasma... [more]
HEM3_METS51.134e-1137.88Probable porphobilinogen deaminase OS=Metallosphae... [more]
HEM31_STRAW2.527e-1134.65Porphobilinogen deaminase 1 OS=Streptomyces avermi... [more]
HEM3_CALS83.300e-1133.83Porphobilinogen deaminase OS=Caldicellulosiruptor ... [more]
HEM3_SULTO5.630e-1135.11Probable porphobilinogen deaminase OS=Sulfolobus t... [more]
HEM3_CORDI5.630e-1137.59Porphobilinogen deaminase OS=Corynebacterium dipht... [more]

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Properties
Property NameValue
Genbank descriptionC31009H04EF AbioticL1 Citrus clementina cDNA clone C31009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869225 ID=FC869225; Name=FC869225; organism=Citrus clementina; type=EST; length=756bp
GGAAACCAAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTC
TTCTTTCATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGAT
ACTGGGCAGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAG
CAGCTTCTTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGC
TATCCAGGGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGAC
TCCGTCTTTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAG
CCTCTGCTGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGA
GGAAGCCCTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCAT
GGCTTTGCATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAA
TAAAGACAACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGT
GGGAAGGGCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCA
AATTGACATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAG
AGAAGACCATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCA
TTTATTTCGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCAGGAAGCAT
TGTTGGTACTGCTTCACTTAGAAGAAGTCTCAAATACTCCATAGATATCC
ATCATT
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