FC869225

Overview
NameFC869225
Unique NameFC869225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9484 contig Ccv1_Contig9484:1..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_YERPA (Porphobilinogen deaminase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=hemC PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.645e-28
Identity = 71/132 (53.79%), Postives = 86/132 (65.15%), Query Frame = 3
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IIRI TR SPLAL QAH  ++ L A HP L     I++V + T GD IL  PLA +GGKGLF KE++ AL++ + DIAVHSMKDVP   PE   L    +RED RDAF+          PAGS+VGT+SLRR
Sbjct:    5 IIRIATRQSPLALWQAHYVQHLLQANHPGLQ----IELVPMVTRGDIILDTPLAKVGGKGLFVKELELALLDGRADIAVHSMKDVPIAFPEGLGLVTICEREDPRDAFVSSHYAHLDDLPAGSVVGTSSLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_YERP3 (Porphobilinogen deaminase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=hemC PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.645e-28
Identity = 71/132 (53.79%), Postives = 86/132 (65.15%), Query Frame = 3
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IIRI TR SPLAL QAH  ++ L A HP L     I++V + T GD IL  PLA +GGKGLF KE++ AL++ + DIAVHSMKDVP   PE   L    +RED RDAF+          PAGS+VGT+SLRR
Sbjct:    5 IIRIATRQSPLALWQAHYVQHLLQANHPGLQ----IELVPMVTRGDIILDTPLAKVGGKGLFVKELELALLDGRADIAVHSMKDVPIAFPEGLGLVTICEREDPRDAFVSSHYAHLDDLPAGSVVGTSSLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_MANSM (Porphobilinogen deaminase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=hemC PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.926e-27
Identity = 70/144 (48.61%), Postives = 93/144 (64.58%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR-----SLKYSIDI 749
            ++I TR SPLAL QA+  +++L AL+P+L     +++V + T GD IL  PLA IGGKGLF KE++ AL+N + DIAVHSMKDVP   P+   L    +RED RDAF+          P G+IVGT+SLRR     SL+  +DI
Sbjct:    7 LKIATRQSPLALWQANYVKDRLTALYPDLQ----VELVTMVTKGDVILDTPLAKIGGKGLFVKELEHALLNHEADIAVHSMKDVPMEFPQGLGLSVICKREDPRDAFVSNKYRSLAELPQGAIVGTSSLRRQCQLKSLRPDLDI 146          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_ACIAD (Porphobilinogen deaminase OS=Acinetobacter sp. (strain ADP1) GN=hemC PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.926e-27
Identity = 67/131 (51.15%), Postives = 86/131 (65.65%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++I TR SPLAL QA   R++L AL+PEL     +++V   T GDKIL  PLA IGGKGLF KE++ AL++ + D+AVHSMKDVP +LPE   L    +RED  DAF+          P G+ VGT+SLRR
Sbjct:    9 LKIATRQSPLALWQAEHIRDRLQALYPELK----VELVKFVTQGDKILDTPLAKIGGKGLFVKELEAALLDGRADLAVHSMKDVPMHLPEGLSLAVICEREDPLDAFVSNHVMSFDQLPLGARVGTSSLRR 135          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_YERE8 (Porphobilinogen deaminase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=hemC PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.515e-27
Identity = 70/132 (53.03%), Postives = 85/132 (64.39%), Query Frame = 3
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IIRI TR SPLAL QAH  ++ L A HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL+  + DIAVHSMKDVP   PE   L    +R+D RDAF+          PAGSIVGT+SLRR
Sbjct:    5 IIRIATRQSPLALWQAHYVQHLLQANHPGLQ----VELVPMVTRGDIILDTPLAKVGGKGLFVKELELALLEGRADIAVHSMKDVPIAFPEGLGLVTICERDDPRDAFVSINYAHLDELPAGSIVGTSSLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_GEOSL (Porphobilinogen deaminase OS=Geobacter sulfurreducens GN=hemC PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.290e-27
Identity = 68/131 (51.91%), Postives = 88/131 (67.18%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +RIGTR S LAL QA+  +++L   +P +     +++V IKT GDKIL  PLA +GGKGLF KEI+EA++  +IDIAVHSMKDVPT  PE   L C  +RED RDAFI          P G+ +GT++LRR
Sbjct:    6 LRIGTRASQLALWQANWVKSELEKRYPGME----VELVKIKTIGDKILDVPLAQVGGKGLFVKEIEEAMLRGEIDIAVHSMKDVPTEFPEGLGLVCITEREDPRDAFI-SNGVTFANLPQGAKIGTSALRR 131          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_ENTS8 (Porphobilinogen deaminase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=hemC PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.290e-27
Identity = 67/132 (50.76%), Postives = 85/132 (64.39%), Query Frame = 3
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++RI TR SPLAL QA   + +L A HP L     +++V + T GD IL  PLA +GGKGLF KE++ A+++ + DIAVHSMKDVP   PE   L    +RED RDAF+          PAGSIVGT+SLRR
Sbjct:    5 VLRIATRQSPLALWQAQYVKQRLEACHPGLT----VELVPMVTRGDVILDTPLAKVGGKGLFVKELELAMLDGRADIAVHSMKDVPVEFPEGLGLVTICEREDPRDAFVSNQYKSLDEMPAGSIVGTSSLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_SERP5 (Porphobilinogen deaminase OS=Serratia proteamaculans (strain 568) GN=hemC PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.604e-27
Identity = 68/132 (51.52%), Postives = 85/132 (64.39%), Query Frame = 3
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IIRI TR SPLAL QAH  + +LMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL++ + DIAVHSMKDVP   P    L    +R+D RDAF+          P GS+VGT+SLRR
Sbjct:    5 IIRIATRQSPLALWQAHYVQQRLMANHPGLQ----VELVPMVTKGDIILDTPLAKVGGKGLFVKELELALLDGRADIAVHSMKDVPVDFPAGLGLVTICERDDPRDAFVSNRFTSLDQLPQGSVVGTSSLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_WOLSU (Porphobilinogen deaminase OS=Wolinella succinogenes GN=hemC PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.248e-26
Identity = 66/134 (49.25%), Postives = 86/134 (64.18%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRSLK 734
            I IGTRGS LAL QA   + +L   H  L+    +++ I+KT GDKIL  PLA +GGKGLFTKE++E ++  +ID+AVHS+KDVP  L E   L    +REDVRD F+          P G+ VGT SLRRS++
Sbjct:    4 IIIGTRGSVLALWQAEYVKAELERAHEGLS----VELKIVKTKGDKILDVPLAKVGGKGLFTKELEEMMLQGEIDLAVHSLKDVPVELIEGLTLSAITEREDVRDCFLSDKYASLETLPLGAKVGTTSLRRSMQ 133          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_VIBSL (Porphobilinogen deaminase OS=Vibrio splendidus (strain LGP32) GN=hemC PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.248e-26
Identity = 70/147 (47.62%), Postives = 89/147 (60.54%), Query Frame = 3
Query:  318 TKVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRS---LKYSIDI 749
            T  A IRI TR SPLAL QA+  R+ L A HP L     +++V + T GD IL  PLA +GGKGLF KE++ A++  + D+AVHSMKDVP   PE   L    +RED RDAF+          P G++VGT SLRR    L+Y  D+
Sbjct:    2 TNSAPIRIATRKSPLALWQAYFVRDALQAAHPGLE----VELVTMVTKGDIILDTPLAKVGGKGLFVKELEVAMLEGRADLAVHSMKDVPVDFPEGLGLVTICEREDPRDAFVSNTYNNIDELPQGAVVGTCSLRRQCQLLEYRPDL 144          
The following BLAST results are available for this feature:
BLAST of FC869225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 460
Match NameE-valueIdentityDescription
HEM3_YERPA8.645e-2853.79Porphobilinogen deaminase OS=Yersinia pestis bv. A... [more]
HEM3_YERP38.645e-2853.79Porphobilinogen deaminase OS=Yersinia pseudotuberc... [more]
HEM3_MANSM1.926e-2748.61Porphobilinogen deaminase OS=Mannheimia succinicip... [more]
HEM3_ACIAD1.926e-2751.15Porphobilinogen deaminase OS=Acinetobacter sp. (st... [more]
HEM3_YERE82.515e-2753.03Porphobilinogen deaminase OS=Yersinia enterocoliti... [more]
HEM3_GEOSL4.290e-2751.91Porphobilinogen deaminase OS=Geobacter sulfurreduc... [more]
HEM3_ENTS84.290e-2750.76Porphobilinogen deaminase OS=Enterobacter sakazaki... [more]
HEM3_SERP55.604e-2751.52Porphobilinogen deaminase OS=Serratia proteamacula... [more]
HEM3_WOLSU1.248e-2649.25Porphobilinogen deaminase OS=Wolinella succinogene... [more]
HEM3_VIBSL1.248e-2647.62Porphobilinogen deaminase OS=Vibrio splendidus (st... [more]

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Properties
Property NameValue
Genbank descriptionC31009H04EF AbioticL1 Citrus clementina cDNA clone C31009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869225 ID=FC869225; Name=FC869225; organism=Citrus clementina; type=EST; length=756bp
GGAAACCAAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTC
TTCTTTCATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGAT
ACTGGGCAGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAG
CAGCTTCTTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGC
TATCCAGGGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGAC
TCCGTCTTTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAG
CCTCTGCTGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGA
GGAAGCCCTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCAT
GGCTTTGCATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAA
TAAAGACAACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGT
GGGAAGGGCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCA
AATTGACATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAG
AGAAGACCATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCA
TTTATTTCGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCAGGAAGCAT
TGTTGGTACTGCTTCACTTAGAAGAAGTCTCAAATACTCCATAGATATCC
ATCATT
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