FC869225

Overview
NameFC869225
Unique NameFC869225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9484 contig Ccv1_Contig9484:1..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_PSEPF (Porphobilinogen deaminase OS=Pseudomonas fluorescens (strain Pf0-1) GN=hemC PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.248e-26
Identity = 68/131 (51.91%), Postives = 84/131 (64.12%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IRI TR S LAL QA   + +L A HP L     + +V + + GDK+L  PL+ IGGKGLF KE++ AL+ ++ DIAVHSMKDVP   PE   L C  +RED RDAF+          PAGSIVGT+SLRR
Sbjct:    6 IRIATRKSALALWQAEYVKARLEAAHPGLL----VTLVPMVSRGDKLLDSPLSKIGGKGLFVKELETALLENEADIAVHSMKDVPMDFPEGLGLFCICEREDPRDAFVSNTYSSLDALPAGSIVGTSSLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_GEOMG (Porphobilinogen deaminase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=hemC PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.248e-26
Identity = 68/131 (51.91%), Postives = 87/131 (66.41%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +RIGTR S LAL QA+  + +L   +P +A    +++V IKT GDKIL  PLA +GGKGLF KEI+EA++  +IDIAVHSMKDVPT  PE   L C  +RED RDA I          P G+ +GT++LRR
Sbjct:    6 LRIGTRASQLALWQANWVKGELEKRYPGMA----VELVKIKTMGDKILDVPLAQVGGKGLFVKEIEEAMLRGEIDIAVHSMKDVPTEFPEGLGLYCITEREDPRDAVI-SRGVKFADLPQGARIGTSALRR 131          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_VIBPA (Porphobilinogen deaminase OS=Vibrio parahaemolyticus GN=hemC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.630e-26
Identity = 66/136 (48.53%), Postives = 84/136 (61.76%), Query Frame = 3
Query:  318 TKVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            T+   IRI TR SPLAL QAH  ++ L A HP L     +++V + T GD IL  PLA +GGKGLF KE++ A++  + D+AVHSMKDVP   PE   L    +RED RDAF+          P G++VGT SLRR
Sbjct:    2 TQSTPIRIATRKSPLALWQAHFVKDALQAAHPGLE----VELVTMVTKGDVILDTPLAKVGGKGLFVKELEVAMLEGRADLAVHSMKDVPVDFPEGLGLVTICEREDPRDAFVSNTYSNINELPQGAVVGTCSLRR 133          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_PSEPW (Porphobilinogen deaminase OS=Pseudomonas putida (strain W619) GN=hemC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.630e-26
Identity = 68/131 (51.91%), Postives = 84/131 (64.12%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IRI TR S LAL QA   + +L   HP L     + +V + + GDK+L  PLA IGGKGLF KE++ AL++++ DIAVHSMKDVP   PE   L C  +RED RDAF+          PAGSIVGT+SLRR
Sbjct:    6 IRIATRKSALALWQAEYVKARLEQAHPGLL----VTLVPMVSRGDKLLDAPLAKIGGKGLFVKELETALLDNEADIAVHSMKDVPMDFPEGLGLYCICEREDPRDAFVSNRFSSLDALPAGSIVGTSSLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_PSEPG (Porphobilinogen deaminase OS=Pseudomonas putida (strain GB-1) GN=hemC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.630e-26
Identity = 68/131 (51.91%), Postives = 84/131 (64.12%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IRI TR S LAL QA   + +L   HP L     + +V + + GDK+L  PLA IGGKGLF KE++ AL++++ DIAVHSMKDVP   PE   L C  +RED RDAF+          PAGSIVGT+SLRR
Sbjct:    6 IRIATRKSALALWQAEYVKARLEQAHPGLL----VTLVPMVSRGDKLLDAPLAKIGGKGLFVKELETALLDNEADIAVHSMKDVPMDFPEGLGLYCICEREDPRDAFVSNTFDSLEALPAGSIVGTSSLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_PSEE4 (Porphobilinogen deaminase OS=Pseudomonas entomophila (strain L48) GN=hemC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.630e-26
Identity = 67/131 (51.15%), Postives = 84/131 (64.12%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IRI TR S LAL QA   + +L   HP L     + +V + + GDK+L  PLA IGGKGLF KE++ AL++++ DIAVHSMKDVP   PE   L C  +RED RDAF+          PAGS+VGT+SLRR
Sbjct:    6 IRIATRKSALALWQAEYVKARLEQAHPGLQ----VSLVPMVSRGDKLLDAPLAKIGGKGLFVKELETALLDNEADIAVHSMKDVPMDFPEGLGLYCICEREDPRDAFVSNTFKSLEALPAGSVVGTSSLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_VIBHB (Porphobilinogen deaminase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=hemC PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.129e-26
Identity = 66/136 (48.53%), Postives = 84/136 (61.76%), Query Frame = 3
Query:  318 TKVAIIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            T+   IRI TR SPLAL QAH  ++ L A HP L     +++V + T GD IL  PLA +GGKGLF KE++ A++  + D+AVHSMKDVP   PE   L    +RED RDAF+          P G++VGT SLRR
Sbjct:    2 TQSTPIRIATRKSPLALWQAHFVKDALQAAHPGLE----VELVTMVTKGDIILDTPLAKVGGKGLFVKELEVAMLEGRADLAVHSMKDVPVDFPEGLGLVTICEREDPRDAFVSNTYNNIDELPQGAVVGTCSLRR 133          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_PROMI (Porphobilinogen deaminase OS=Proteus mirabilis GN=hemC PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.129e-26
Identity = 67/131 (51.15%), Postives = 84/131 (64.12%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IRI TR SPLA+ QA   + +L   HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL++S+ DIAVHSMKDVP   PE   L    +RED RDAF+          PAGS+VGT+SLRR
Sbjct:    6 IRIATRQSPLAMWQALYVKEQLQIAHPSLV----VELVPMVTKGDIILDTPLAKVGGKGLFVKELELALLSSRADIAVHSMKDVPIDFPEGLGLVTICEREDPRDAFVSNHYDSLEQLPAGSVVGTSSLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_PROMH (Porphobilinogen deaminase OS=Proteus mirabilis (strain HI4320) GN=hemC PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.129e-26
Identity = 67/131 (51.15%), Postives = 84/131 (64.12%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IRI TR SPLA+ QA   + +L   HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL++S+ DIAVHSMKDVP   PE   L    +RED RDAF+          PAGS+VGT+SLRR
Sbjct:    6 IRIATRQSPLAMWQALYVKEQLQIAHPSLV----VELVPMVTKGDIILDTPLAKVGGKGLFVKELELALLSSRADIAVHSMKDVPIDFPEGLGLVTICEREDPRDAFVSNHYDSLEQLPAGSVVGTSSLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_VIBFM (Porphobilinogen deaminase OS=Vibrio fischeri (strain MJ11) GN=hemC PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.781e-26
Identity = 64/131 (48.85%), Postives = 82/131 (62.60%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +RI TR SPLAL QAH  ++ L A HP L     +++V + T GD IL  PLA +GGKGLF KE++ A++  + D+AVHSMKDVP   PE   L    +RED RDAF+          P G++VGT SLRR
Sbjct:    7 VRIATRKSPLALWQAHFVKDALQAAHPGLE----VELVTMVTKGDIILDTPLAKVGGKGLFVKELEVAMLEGRADLAVHSMKDVPVEFPEGLGLVTICEREDPRDAFVSNTYNNIDELPQGAVVGTCSLRR 133          
The following BLAST results are available for this feature:
BLAST of FC869225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 460
Match NameE-valueIdentityDescription
HEM3_PSEPF1.248e-2651.91Porphobilinogen deaminase OS=Pseudomonas fluoresce... [more]
HEM3_GEOMG1.248e-2651.91Porphobilinogen deaminase OS=Geobacter metalliredu... [more]
HEM3_VIBPA1.630e-2648.53Porphobilinogen deaminase OS=Vibrio parahaemolytic... [more]
HEM3_PSEPW1.630e-2651.91Porphobilinogen deaminase OS=Pseudomonas putida (s... [more]
HEM3_PSEPG1.630e-2651.91Porphobilinogen deaminase OS=Pseudomonas putida (s... [more]
HEM3_PSEE41.630e-2651.15Porphobilinogen deaminase OS=Pseudomonas entomophi... [more]
HEM3_VIBHB2.129e-2648.53Porphobilinogen deaminase OS=Vibrio harveyi (strai... [more]
HEM3_PROMI2.129e-2651.15Porphobilinogen deaminase OS=Proteus mirabilis GN=... [more]
HEM3_PROMH2.129e-2651.15Porphobilinogen deaminase OS=Proteus mirabilis (st... [more]
HEM3_VIBFM2.781e-2648.85Porphobilinogen deaminase OS=Vibrio fischeri (stra... [more]

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Properties
Property NameValue
Genbank descriptionC31009H04EF AbioticL1 Citrus clementina cDNA clone C31009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869225 ID=FC869225; Name=FC869225; organism=Citrus clementina; type=EST; length=756bp
GGAAACCAAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTC
TTCTTTCATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGAT
ACTGGGCAGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAG
CAGCTTCTTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGC
TATCCAGGGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGAC
TCCGTCTTTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAG
CCTCTGCTGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGA
GGAAGCCCTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCAT
GGCTTTGCATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAA
TAAAGACAACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGT
GGGAAGGGCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCA
AATTGACATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAG
AGAAGACCATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCA
TTTATTTCGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCAGGAAGCAT
TGTTGGTACTGCTTCACTTAGAAGAAGTCTCAAATACTCCATAGATATCC
ATCATT
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