FC869225

Overview
NameFC869225
Unique NameFC869225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9484 contig Ccv1_Contig9484:1..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_VIBF1 (Porphobilinogen deaminase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=hemC PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.781e-26
Identity = 64/131 (48.85%), Postives = 82/131 (62.60%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +RI TR SPLAL QAH  ++ L A HP L     +++V + T GD IL  PLA +GGKGLF KE++ A++  + D+AVHSMKDVP   PE   L    +RED RDAF+          P G++VGT SLRR
Sbjct:    7 VRIATRKSPLALWQAHFVKDALQAAHPGLE----VELVTMVTKGDIILDTPLAKVGGKGLFVKELEVAMLEGRADLAVHSMKDVPVEFPEGLGLVTICEREDPRDAFVSNTYNNIDELPQGAVVGTCSLRR 133          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_SYNFM (Porphobilinogen deaminase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=hemC PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.781e-26
Identity = 64/133 (48.12%), Postives = 85/133 (63.91%), Query Frame = 3
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRS 728
            +IRIGTRGS LAL Q+   +  + AL P L     +++ +++TTGDKIL  PLA +GGKGLF KEI++AL+   +D+AVHSMKDVP  LPE   +    +RED RD  +          P G  VGT+SLRR+
Sbjct:    5 VIRIGTRGSMLALKQSGNVKAAMEALWPGLR----VELQVVRTTGDKILDVPLAKVGGKGLFVKEIEDALLARTVDLAVHSMKDVPAILPEGLEIGAIPKREDPRDVIVTRTGKGIADLPMGGRVGTSSLRRA 133          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_PHOLL (Porphobilinogen deaminase OS=Photorhabdus luminescens subsp. laumondii GN=hemC PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.781e-26
Identity = 68/131 (51.91%), Postives = 82/131 (62.60%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IRI TR SPLA+ QA   + KL   HP+L     +Q+V + T GD IL  PLA IGGKGLF KE++ AL+  + DIAVHSMKDVP   PE   L    +R+D RDAF+          P GSIVGT+SLRR
Sbjct:    6 IRIATRQSPLAMWQALYVQQKLQQCHPDLE----VQLVPMVTQGDVILDTPLAKIGGKGLFVKELELALLEGRADIAVHSMKDVPISFPEGLGLVTICERDDPRDAFVSVKYHSLDELPTGSIVGTSSLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_YERIN (Porphobilinogen deaminase (Fragment) OS=Yersinia intermedia GN=hemC PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.632e-26
Identity = 68/132 (51.52%), Postives = 84/132 (63.64%), Query Frame = 3
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IIRI TR SPLAL QAH  ++ L A HP L     +++V + T GD IL  PLA +GGKGLF KE++ AL++ + DIAVHSMKDVP   PE   L    + +D RDAF+          PAGSIVG +SLRR
Sbjct:    5 IIRIATRQSPLALWQAHYVQHLLQANHPGLQ----VELVPMVTRGDIILDTPLAKVGGKGLFVKELELALLDGRADIAVHSMKDVPVAFPEGLGLVTICEPDDPRDAFVSPHFAHIDDLPAGSIVGNSSLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_VIBCH (Porphobilinogen deaminase OS=Vibrio cholerae GN=hemC PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.632e-26
Identity = 65/131 (49.62%), Postives = 84/131 (64.12%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IRI TR SPLAL QA+  ++ LMA HP L     +++V + T GD IL  PLA +GGKGLF KE++ A++  + D+AVHSMKDVP   P+   L    +RED RDAF+          P+G+IVGT SLRR
Sbjct:    6 IRIATRQSPLALWQANYVKDALMAAHPGLQ----VELVTMVTRGDVILDTPLAKVGGKGLFVKELEIAMLEGRADLAVHSMKDVPVDFPDGLGLVTICEREDPRDAFVSNTYAKIEDLPSGAIVGTCSLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_GEOLS (Porphobilinogen deaminase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=hemC PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.632e-26
Identity = 67/131 (51.15%), Postives = 88/131 (67.18%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +RIGTR S LAL QA+ T+++L A +P +     +++V IKT GDKIL  PLA +GGKGLF KEI+EA++  +ID+AVHSMKDVPT  PE   L    +RED RDAFI            G+ +GT++LRR
Sbjct:    6 LRIGTRASQLALWQANWTKSELEARYPGIQ----VELVKIKTMGDKILDVPLAQVGGKGLFVKEIEEAMLRGEIDLAVHSMKDVPTEFPEGLGLVVTTKREDPRDAFISDKVTFSELR-QGARIGTSALRR 131          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_ACIF5 (Porphobilinogen deaminase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=hemC PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.632e-26
Identity = 62/131 (47.33%), Postives = 85/131 (64.89%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +RIGTR SPLA+ QA   R  L+ LHP +A    ++I+ + T+GD +L  PL  +GGKGLF KEI++AL   ++D+AVHSMKDVP   P+   +   + REDVRDAF+          P G+ VG++SLRR
Sbjct:    5 LRIGTRASPLAVWQAEHVRAALLRLHPGMA----VEIITMTTSGDVLLDAPLHALGGKGLFVKEIEDALQQRRVDVAVHSMKDVPALQPDGLEIVAIMAREDVRDAFVSNTFLHPDALPEGARVGSSSLRR 131          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_ACIF2 (Porphobilinogen deaminase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=hemC PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.632e-26
Identity = 62/131 (47.33%), Postives = 85/131 (64.89%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +RIGTR SPLA+ QA   R  L+ LHP +A    ++I+ + T+GD +L  PL  +GGKGLF KEI++AL   ++D+AVHSMKDVP   P+   +   + REDVRDAF+          P G+ VG++SLRR
Sbjct:    5 LRIGTRASPLAVWQAEHVRAALLRLHPGMA----VEIITMTTSGDVLLDAPLHALGGKGLFVKEIEDALQQRRVDVAVHSMKDVPALQPDGLEIVAIMAREDVRDAFVSNTFLHPDALPEGARVGSSSLRR 131          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_PSEF5 (Porphobilinogen deaminase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=hemC PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.744e-26
Identity = 66/131 (50.38%), Postives = 82/131 (62.60%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IRI TR S LAL QA   + +L   HP L     + +V + + GDK+L  PL+ IGGKGLF KE++ AL+ +Q DIAVHSMKDVP   PE   L C  +RED RDAF+          P GS+VGT+SLRR
Sbjct:    6 IRIATRKSALALWQAEYVKARLQEAHPGLV----VTLVPMVSRGDKLLDSPLSKIGGKGLFVKELETALLENQADIAVHSMKDVPMDFPEGLGLFCICEREDPRDAFVSNTYASLDELPEGSVVGTSSLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_ACTSZ (Porphobilinogen deaminase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=hemC PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.744e-26
Identity = 65/132 (49.24%), Postives = 85/132 (64.39%), Query Frame = 3
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            I++I TR SPLAL QA+  +++L  ++P+L     +++V + T GD IL  PLA IGGKGLF KE++ AL+N   DIAVHSMKDVP   P    L    +RED RDAF+          P G+IVGT+SLRR
Sbjct:    5 ILKIATRQSPLALWQANFVKDRLTEIYPDLT----VELVPMVTKGDVILDTPLAKIGGKGLFVKELENALLNGDADIAVHSMKDVPMEFPAGLGLSVICKREDPRDAFVSNRYRTLDDLPPGAIVGTSSLRR 132          
The following BLAST results are available for this feature:
BLAST of FC869225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 460
Match NameE-valueIdentityDescription
HEM3_VIBF12.781e-2648.85Porphobilinogen deaminase OS=Vibrio fischeri (stra... [more]
HEM3_SYNFM2.781e-2648.12Porphobilinogen deaminase OS=Syntrophobacter fumar... [more]
HEM3_PHOLL2.781e-2651.91Porphobilinogen deaminase OS=Photorhabdus luminesc... [more]
HEM3_YERIN3.632e-2651.52Porphobilinogen deaminase (Fragment) OS=Yersinia i... [more]
HEM3_VIBCH3.632e-2649.62Porphobilinogen deaminase OS=Vibrio cholerae GN=he... [more]
HEM3_GEOLS3.632e-2651.15Porphobilinogen deaminase OS=Geobacter lovleyi (st... [more]
HEM3_ACIF53.632e-2647.33Porphobilinogen deaminase OS=Acidithiobacillus fer... [more]
HEM3_ACIF23.632e-2647.33Porphobilinogen deaminase OS=Acidithiobacillus fer... [more]
HEM3_PSEF54.744e-2650.38Porphobilinogen deaminase OS=Pseudomonas fluoresce... [more]
HEM3_ACTSZ4.744e-2649.24Porphobilinogen deaminase OS=Actinobacillus succin... [more]

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Properties
Property NameValue
Genbank descriptionC31009H04EF AbioticL1 Citrus clementina cDNA clone C31009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869225 ID=FC869225; Name=FC869225; organism=Citrus clementina; type=EST; length=756bp
GGAAACCAAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTC
TTCTTTCATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGAT
ACTGGGCAGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAG
CAGCTTCTTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGC
TATCCAGGGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGAC
TCCGTCTTTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAG
CCTCTGCTGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGA
GGAAGCCCTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCAT
GGCTTTGCATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAA
TAAAGACAACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGT
GGGAAGGGCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCA
AATTGACATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAG
AGAAGACCATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCA
TTTATTTCGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCAGGAAGCAT
TGTTGGTACTGCTTCACTTAGAAGAAGTCTCAAATACTCCATAGATATCC
ATCATT
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