FC869225

Overview
NameFC869225
Unique NameFC869225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_METCA (Porphobilinogen deaminase OS=Methylococcus capsulatus GN=hemC PE=3 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 6.195e-26
Identity = 63/131 (48.09%), Postives = 83/131 (63.36%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +RI TR SPLAL QA    ++L A HP+L     +++V + T GDK+L  PLA +GGKGLF KE+++ L+  + DIAVHSMKDVP   PE   L   L+RED RDA +          PA + +GT+SLRR
Sbjct:   18 LRIATRKSPLALWQAEYVASRLRAAHPDLR----VELVGMTTRGDKLLDAPLAKVGGKGLFVKELEQGLLEGRADIAVHSMKDVPVEFPEGLHLAAILEREDPRDALVSHRYRSFAELPADARIGTSSLRR 144          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_GEOSM (Porphobilinogen deaminase OS=Geobacter sp. (strain M21) GN=hemC PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.195e-26
Identity = 66/131 (50.38%), Postives = 86/131 (65.65%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +RIGTR S LAL QA+  +++L   +P++     + +  IKT GDKIL  PLA +GGKGLF KEI+EA++  +IDIAVHSMKDVPT  PE   L C  +RED RDA I          P G+ +GT++LRR
Sbjct:    6 LRIGTRASQLALWQANWVKSELEKRYPDMT----VTLTKIKTIGDKILDVPLAQVGGKGLFVKEIEEAMLRGEIDIAVHSMKDVPTEFPEGLGLYCITEREDPRDAVI-SNNVKFADLPQGARIGTSALRR 131          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_GEOBB (Porphobilinogen deaminase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=hemC PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.195e-26
Identity = 66/131 (50.38%), Postives = 86/131 (65.65%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +RIGTR S LAL QA+  +++L   +P++     + +  IKT GDKIL  PLA +GGKGLF KEI+EA++  +IDIAVHSMKDVPT  PE   L C  +RED RDA I          P G+ +GT++LRR
Sbjct:    6 LRIGTRASQLALWQANWVKSELEKRYPDMT----VTLTKIKTIGDKILDVPLAQVGGKGLFVKEIEEAMLRGEIDIAVHSMKDVPTEFPEGLGLYCITEREDPRDAVI-SNGVKFADLPQGARIGTSALRR 131          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_GEOSF (Porphobilinogen deaminase OS=Geobacter sp. (strain FRC-32) GN=hemC PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.091e-26
Identity = 67/131 (51.15%), Postives = 85/131 (64.89%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +RIGTR S LAL QA+  +++L   +P +     + +V IKT GDKIL  PLA +GGKGLF KEI+EA++   IDIAVHSMKDVPT  PE   L C  +RED RDA I          P G+ +GT++LRR
Sbjct:    6 LRIGTRASQLALWQANWVKSELEQRYPGME----VSLVKIKTIGDKILDVPLAQVGGKGLFVKEIEEAMLRGDIDIAVHSMKDVPTEFPEGLGLHCITEREDPRDAVI-SRGTKFADLPQGAKIGTSALRR 131          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_SHEWM (Porphobilinogen deaminase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=hemC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.057e-25
Identity = 63/132 (47.73%), Postives = 84/132 (63.64%), Query Frame = 3
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +IRI TR SPLAL QA   + +L   HP+L     ++++ + T GD IL  PLA +GGKGLF KE++ A++ ++ DIAVHSMKDVP   PE   L    +RED RDAF+          P G++VGT+SLRR
Sbjct:    5 VIRIATRKSPLALWQAEFVKAELEKFHPDLT----VELLPMSTKGDIILDTPLAKVGGKGLFVKELEVAMLENRADIAVHSMKDVPVDFPEGLGLEIICEREDPRDAFVSNNYKSISELPKGAVVGTSSLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_PASMU (Porphobilinogen deaminase OS=Pasteurella multocida GN=hemC PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.057e-25
Identity = 65/131 (49.62%), Postives = 83/131 (63.36%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +RI TR SPLAL QA+  +  L  +H  L     +++V + T GD IL  PLA IGGKGLF KE+++AL+  + DIAVHSMKDVP   P   +L    QRED RDAF+          PAG++VGT+SLRR
Sbjct:    7 LRIATRQSPLALWQANYVKACLEKIHAGLV----VELVPMVTKGDVILDTPLAKIGGKGLFVKELEQALLKGEADIAVHSMKDVPMQFPAGLMLSTICQREDPRDAFVSNSYRTLMELPAGAVVGTSSLRR 133          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_HYPNA (Porphobilinogen deaminase OS=Hyphomonas neptunium (strain ATCC 15444) GN=hemC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.057e-25
Identity = 64/133 (48.12%), Postives = 86/133 (64.66%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAI--QIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +R+GTRGSPLALAQAH+  + + A     A  GA   +IV   TTGDK+ ++ L + GGKGLFT+E+D+AL   ++D+AVHS+KDVP+ LP   I     +RED RD F+          P G+ +GTASLRR
Sbjct:   13 LRLGTRGSPLALAQAHQIADGIRA-----ASAGAYDCEIVAFTTTGDKLTTERLINSGGKGLFTRELDDALSRGELDLAVHSLKDVPSVLPPGQIFAAFPKREDPRDGFLSHGAKSIQDLPEGATLGTASLRR 140          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_GEOUR (Porphobilinogen deaminase OS=Geobacter uraniireducens (strain Rf4) GN=hemC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.057e-25
Identity = 67/131 (51.15%), Postives = 85/131 (64.89%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            +RIGTR S LAL QA+  +++L   +P L     + ++ IKT GDKIL  PLA +GGKGLF KEI+EA++   IDIAVHSMKDVPT  PE   L C  +RED RDA I          P G+ +GT++LRR
Sbjct:    6 LRIGTRASQLALWQANWVKSELEKRYPGLE----VSLLKIKTIGDKILDVPLAQVGGKGLFVKEIEEAMLRGDIDIAVHSMKDVPTEFPEGLGLHCITEREDPRDAVI-SRGIKFADLPKGAKIGTSALRR 131          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_ERWT9 (Porphobilinogen deaminase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=hemC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.057e-25
Identity = 64/137 (46.72%), Postives = 85/137 (62.04%), Query Frame = 3
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRSLKYS 740
            I+RI TR SPLAL QA   + +L+A HP L     ++++ + T GD IL  PLA +GGKGLF KE+++A+++   DIAVHSMKDVP   P    L    +RED  DAF+          P G+IVGT+SLRR  + S
Sbjct:    5 ILRIATRRSPLALWQAEYVQRRLIACHPGLR----VELLPMVTRGDVILDTPLAKVGGKGLFVKELEQAMLSGSADIAVHSMKDVPVAFPPGLGLVAICEREDPHDAFVSHHYTSVDSLPQGAIVGTSSLRRQCQLS 137          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_CAMFF (Porphobilinogen deaminase OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=hemC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.057e-25
Identity = 63/134 (47.01%), Postives = 83/134 (61.94%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRSLK 734
            I+I +R S LAL Q H  R+ L      +AQ  +++I+ +KT GD IL  PLA IGGKGLFTKE++ +++    DIAVHS+KDVPT  P+   L C   REDVRDA +          P G+ VGT SLRR ++
Sbjct:    3 IKIASRNSALALWQTHHIRDLL------IAQGHSVEIITMKTKGDVILDTPLAKIGGKGLFTKELENSMLEGSADIAVHSLKDVPTTFPDGLKLACVCSREDVRDAMLSMKYKNLDELPQGAKVGTTSLRRKMQ 130          
The following BLAST results are available for this feature:
BLAST of FC869225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 460
Match NameE-valueIdentityDescription
HEM3_METCA6.195e-2648.09Porphobilinogen deaminase OS=Methylococcus capsula... [more]
HEM3_GEOSM6.195e-2650.38Porphobilinogen deaminase OS=Geobacter sp. (strain... [more]
HEM3_GEOBB6.195e-2650.38Porphobilinogen deaminase OS=Geobacter bemidjiensi... [more]
HEM3_GEOSF8.091e-2651.15Porphobilinogen deaminase OS=Geobacter sp. (strain... [more]
HEM3_SHEWM1.057e-2547.73Porphobilinogen deaminase OS=Shewanella woodyi (st... [more]
HEM3_PASMU1.057e-2549.62Porphobilinogen deaminase OS=Pasteurella multocida... [more]
HEM3_HYPNA1.057e-2548.12Porphobilinogen deaminase OS=Hyphomonas neptunium ... [more]
HEM3_GEOUR1.057e-2551.15Porphobilinogen deaminase OS=Geobacter uraniireduc... [more]
HEM3_ERWT91.057e-2546.72Porphobilinogen deaminase OS=Erwinia tasmaniensis ... [more]
HEM3_CAMFF1.057e-2547.01Porphobilinogen deaminase OS=Campylobacter fetus s... [more]

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Properties
Property NameValue
Genbank descriptionC31009H04EF AbioticL1 Citrus clementina cDNA clone C31009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869225 ID=FC869225; Name=FC869225; organism=Citrus clementina; type=EST; length=756bp
GGAAACCAAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTC
TTCTTTCATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGAT
ACTGGGCAGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAG
CAGCTTCTTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGC
TATCCAGGGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGAC
TCCGTCTTTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAG
CCTCTGCTGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGA
GGAAGCCCTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCAT
GGCTTTGCATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAA
TAAAGACAACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGT
GGGAAGGGCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCA
AATTGACATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAG
AGAAGACCATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCA
TTTATTTCGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCAGGAAGCAT
TGTTGGTACTGCTTCACTTAGAAGAAGTCTCAAATACTCCATAGATATCC
ATCATT
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