FC869225

Overview
NameFC869225
Unique NameFC869225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9484 contig Ccv1_Contig9484:1..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_SYNAS (Porphobilinogen deaminase OS=Syntrophus aciditrophicus (strain SB) GN=hemC PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.380e-25
Identity = 64/134 (47.76%), Postives = 85/134 (63.43%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRRSLK 734
            ++IGTRGS LAL Q  +   +L   +PE+     ++IV+IKT+GD     PLA IGGKGLF KEI+EAL+   +D+AVHSMKD+P  LPE   +    +RED RD  I          PAG+ +GT SLRRS++
Sbjct:    1 MKIGTRGSALALTQTRQIAARLQGQYPEMH----LEIVVIKTSGDIQKDVPLAKIGGKGLFIKEIEEALLAGTVDLAVHSMKDLPAELPEGLQIAAVPRREDPRDVLISGICREFDNLPAGARIGTGSLRRSVQ 130          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_PSEPK (Porphobilinogen deaminase OS=Pseudomonas putida (strain KT2440) GN=hemC PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.380e-25
Identity = 67/131 (51.15%), Postives = 83/131 (63.36%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IRI TR S LAL QA   + +L   H  L     + +V + + GDK+L  PLA IGGKGLF KE++ AL++++ DIAVHSMKDVP   PE   L C  +RED RDAF+          PAGSIVGT+SLRR
Sbjct:    6 IRIATRKSALALWQAEYVKARLEQAHTGLQ----VTLVPMVSRGDKLLDAPLAKIGGKGLFVKELETALLDNEADIAVHSMKDVPMDFPEGLGLYCICEREDPRDAFVSNTFDSLEALPAGSIVGTSSLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_PSEP1 (Porphobilinogen deaminase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=hemC PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.380e-25
Identity = 67/131 (51.15%), Postives = 83/131 (63.36%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IRI TR S LAL QA   + +L   H  L     + +V + + GDK+L  PLA IGGKGLF KE++ AL++++ DIAVHSMKDVP   PE   L C  +RED RDAF+          PAGSIVGT+SLRR
Sbjct:    6 IRIATRKSALALWQAEYVKARLEQAHTGLQ----VTLVPMVSRGDKLLDAPLAKIGGKGLFVKELETALLDNEADIAVHSMKDVPMDFPEGLGLYCICEREDPRDAFVSNTFDSLETLPAGSIVGTSSLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_PSEFS (Porphobilinogen deaminase OS=Pseudomonas fluorescens (strain SBW25) GN=hemC PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.380e-25
Identity = 66/131 (50.38%), Postives = 82/131 (62.60%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IRI TR S LAL QA   + +L   HP L     + +V + + GDK+L  PL+ IGGKGLF KE++ AL+ ++ DIAVHSMKDVP   PE   L C  +RED RDAF+          P GSIVGT+SLRR
Sbjct:    6 IRIATRKSALALWQAEYVKARLEQAHPGLK----VSLVPMVSRGDKLLDSPLSKIGGKGLFVKELETALLENEADIAVHSMKDVPMDFPEGLGLFCICEREDPRDAFVSNTYASLDALPLGSIVGTSSLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_HAES2 (Porphobilinogen deaminase OS=Haemophilus somnus (strain 2336) GN=hemC PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.380e-25
Identity = 65/131 (49.62%), Postives = 83/131 (63.36%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++I TR SPLAL QA+  +N+L   +  L+    +++V I T GD IL  PLA IGGKGLF KE++ AL+N + DIAVHSMKDVP   P+   L     RED RDAF+          P G+IVGT+SLRR
Sbjct:    7 LKIATRQSPLALWQANYVKNRLQQRYSHLS----VELVPIITKGDVILDTPLAKIGGKGLFVKELENALLNGEADIAVHSMKDVPMQFPKGLELSVICPREDPRDAFVSNKYRTLDELPQGAIVGTSSLRR 133          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_HAES1 (Porphobilinogen deaminase OS=Haemophilus somnus (strain 129Pt) GN=hemC PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.380e-25
Identity = 65/131 (49.62%), Postives = 83/131 (63.36%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++I TR SPLAL QA+  +N+L   +  L+    +++V I T GD IL  PLA IGGKGLF KE++ AL+N + DIAVHSMKDVP   P+   L     RED RDAF+          P G+IVGT+SLRR
Sbjct:    7 LKIATRQSPLALWQANYVKNRLQQRYSHLS----VELVPIITKGDVILDTPLAKIGGKGLFVKELENALLNGEADIAVHSMKDVPMQFPKGLELSVICPREDPRDAFVSNKYRTLDELPQGAIVGTSSLRR 133          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_ENT38 (Porphobilinogen deaminase OS=Enterobacter sp. (strain 638) GN=hemC PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.380e-25
Identity = 65/132 (49.24%), Postives = 83/132 (62.88%), Query Frame = 3
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            ++RI TR SPLAL QA   + +L A H  L     +++V + T GD IL  PLA +GGKGLF KE++ AL+ ++ DIAVHSMKDVP   PE   L    +RED RDAF+          P GS+VGT+SLRR
Sbjct:    5 VLRIATRQSPLALWQAQYVKQRLEACHQGLR----VELVPMVTRGDVILDTPLAKVGGKGLFVKELEIALLENRADIAVHSMKDVPVEFPEGLGLVTICEREDPRDAFVSNRYASLDDLPKGSVVGTSSLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_PSEU2 (Porphobilinogen deaminase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=hemC PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.803e-25
Identity = 66/131 (50.38%), Postives = 82/131 (62.60%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IRI TR S LAL QA   + +L   HP L     + +V + + GDK+L  PL+ IGGKGLF KE++ AL+ +  DIAVHSMKDVP   P+   L C  +RED RDAF+          PAGSIVGT+SLRR
Sbjct:    6 IRIATRKSALALWQAEYVKARLEQAHPGLL----VTLVPMVSRGDKLLDSPLSKIGGKGLFVKELETALLENNADIAVHSMKDVPMDFPQGLGLFCICEREDPRDAFVSNTFASLDQLPAGSIVGTSSLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_SHEFN (Porphobilinogen deaminase OS=Shewanella frigidimarina (strain NCIMB 400) GN=hemC PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.354e-25
Identity = 63/132 (47.73%), Postives = 84/132 (63.64%), Query Frame = 3
Query:  330 IIRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IIRI TR SPLA+ QA   + +L  +HP L     ++++ + T GD IL  PLA IGGKGLF KE++ A++ ++ DIAVHSMKD+P   PE   L    +RED RDAF+          P G++VGT+SLRR
Sbjct:    5 IIRIATRKSPLAMWQAEFVKAELERIHPGLT----VELLPMSTKGDVILDTPLAKIGGKGLFVKELEVAMLENRADIAVHSMKDLPVEFPEGLGLQVICEREDPRDAFVSNNYKSISELPQGAVVGTSSLRR 132          
BLAST of FC869225 vs. ExPASy Swiss-Prot
Match: HEM3_PSESM (Porphobilinogen deaminase OS=Pseudomonas syringae pv. tomato GN=hemC PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.354e-25
Identity = 66/131 (50.38%), Postives = 81/131 (61.83%), Query Frame = 3
Query:  333 IRIGTRGSPLALAQAHETRNKLMALHPELAQEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINSQIDIAVHSMKDVPTYLPEKTILPCNLQREDVRDAFIXXXXXXXXXXPAGSIVGTASLRR 725
            IRI TR S LAL QA   + +L   HP L     + +V + + GDK+L  PL+ IGGKGLF KE++ AL+    DIAVHSMKDVP   P+   L C  +RED RDAF+          PAGSIVGT+SLRR
Sbjct:    6 IRIATRKSALALWQAEYVKARLEQAHPGLL----VTLVPMVSRGDKLLDSPLSKIGGKGLFVKELETALLEDNADIAVHSMKDVPMDFPQGLGLFCICEREDPRDAFVSNTFESLDALPAGSIVGTSSLRR 132          
The following BLAST results are available for this feature:
BLAST of FC869225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 460
Match NameE-valueIdentityDescription
HEM3_SYNAS1.380e-2547.76Porphobilinogen deaminase OS=Syntrophus aciditroph... [more]
HEM3_PSEPK1.380e-2551.15Porphobilinogen deaminase OS=Pseudomonas putida (s... [more]
HEM3_PSEP11.380e-2551.15Porphobilinogen deaminase OS=Pseudomonas putida (s... [more]
HEM3_PSEFS1.380e-2550.38Porphobilinogen deaminase OS=Pseudomonas fluoresce... [more]
HEM3_HAES21.380e-2549.62Porphobilinogen deaminase OS=Haemophilus somnus (s... [more]
HEM3_HAES11.380e-2549.62Porphobilinogen deaminase OS=Haemophilus somnus (s... [more]
HEM3_ENT381.380e-2549.24Porphobilinogen deaminase OS=Enterobacter sp. (str... [more]
HEM3_PSEU21.803e-2550.38Porphobilinogen deaminase OS=Pseudomonas syringae ... [more]
HEM3_SHEFN2.354e-2547.73Porphobilinogen deaminase OS=Shewanella frigidimar... [more]
HEM3_PSESM2.354e-2550.38Porphobilinogen deaminase OS=Pseudomonas syringae ... [more]

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Properties
Property NameValue
Genbank descriptionC31009H04EF AbioticL1 Citrus clementina cDNA clone C31009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869225 ID=FC869225; Name=FC869225; organism=Citrus clementina; type=EST; length=756bp
GGAAACCAAAACATTACCAATCTCCGCTTCTAACTCGCTTTCTTCTTTTC
TTCTTTCATAAATAATTAGCACACTGTCTGTCCCCGTCTCTGTTTCTGAT
ACTGGGCAGTCATCATTGTTGTTGTGTGTCAATGGAGAGTTTGAGTTTAG
CAGCTTCTTCTCTTTGTACAAGCCGGGGTGGCCCCATGGAGCGCCATTGC
TATCCAGGGTCGGTCTCCCTTGTTGGGTTCTCTTCGCCACGCCTCAAGAC
TCCGTCTTTTCCAAAGAGTTTGAAGAAACGCAGTTTTGGGCTTGTAAGAG
CCTCTGCTGCTGTTGAAACCAAGGTTGCAATCATCAGAATTGGCACCAGA
GGAAGCCCTCTGGCACTTGCTCAGGCTCATGAGACGCGAAACAAACTCAT
GGCTTTGCATCCAGAGCTAGCTCAAGAGGGGGCGATTCAAATTGTAATAA
TAAAGACAACTGGTGATAAGATACTAAGTCAACCACTTGCAGACATTGGT
GGGAAGGGCTTGTTCACCAAAGAAATAGACGAGGCGCTGATAAATAGTCA
AATTGACATCGCCGTGCACTCGATGAAAGATGTTCCAACATATTTACCAG
AGAAGACCATTCTACCTTGCAACCTTCAGCGGGAGGATGTCCGAGATGCA
TTTATTTCGTTGAGTGCAGCCTCTTTAGCAGAACTACCAGCAGGAAGCAT
TGTTGGTACTGCTTCACTTAGAAGAAGTCTCAAATACTCCATAGATATCC
ATCATT
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