FC869228 | Citrus Genome Database

Overview


Name	FC869228
Unique Name	FC869228
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	489

Libraries


Library Name	Type
AbioticL1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig9336	contig	Ccv1_Contig9336:8..496.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of FC869228 vs. ExPASy Swiss-Prot
Match: UBIQ_RABIT (Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.035e-33
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 2

Query:   62 MQIFVKTLTGKTITLEVESSNTIDNVKAKIQDKEGIPPDQQCLFFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 289
            MQIFVKTLTGKTITLEVE S+TI+NVKAKIQDKEGIPPDQQ L FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 124.02 bits (310), Expect = 3.493e-28
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 2

Query:  290 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAGYNIQKEST 487
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+ YNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66

BLAST of FC869228 vs. ExPASy Swiss-Prot
Match: UBIQ_PONPY (Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 8.035e-33
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 2

Query:   62 MQIFVKTLTGKTITLEVESSNTIDNVKAKIQDKEGIPPDQQCLFFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 289
            MQIFVKTLTGKTITLEVE S+TI+NVKAKIQDKEGIPPDQQ L FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 124.02 bits (310), Expect = 3.493e-28
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 2

Query:  290 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAGYNIQKEST 487
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+ YNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66

BLAST of FC869228 vs. ExPASy Swiss-Prot
Match: UBIQ_PLUXY (Ubiquitin OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.035e-33
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 2

Query:   62 MQIFVKTLTGKTITLEVESSNTIDNVKAKIQDKEGIPPDQQCLFFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 289
            MQIFVKTLTGKTITLEVE S+TI+NVKAKIQDKEGIPPDQQ L FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 124.02 bits (310), Expect = 3.493e-28
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 2

Query:  290 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAGYNIQKEST 487
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+ YNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66

BLAST of FC869228 vs. ExPASy Swiss-Prot
Match: UBIQ_PIG (Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.035e-33
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 2

Query:   62 MQIFVKTLTGKTITLEVESSNTIDNVKAKIQDKEGIPPDQQCLFFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 289
            MQIFVKTLTGKTITLEVE S+TI+NVKAKIQDKEGIPPDQQ L FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 124.02 bits (310), Expect = 3.493e-28
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 2

Query:  290 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAGYNIQKEST 487
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+ YNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66

BLAST of FC869228 vs. ExPASy Swiss-Prot
Match: UBIQ_PANTR (Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 8.035e-33
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 2

Query:   62 MQIFVKTLTGKTITLEVESSNTIDNVKAKIQDKEGIPPDQQCLFFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 289
            MQIFVKTLTGKTITLEVE S+TI+NVKAKIQDKEGIPPDQQ L FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 124.02 bits (310), Expect = 3.493e-28
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 2

Query:  290 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAGYNIQKEST 487
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+ YNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66

BLAST of FC869228 vs. ExPASy Swiss-Prot
Match: UBIQ_OPHHA (Ubiquitin OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.035e-33
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 2

Query:   62 MQIFVKTLTGKTITLEVESSNTIDNVKAKIQDKEGIPPDQQCLFFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 289
            MQIFVKTLTGKTITLEVE S+TI+NVKAKIQDKEGIPPDQQ L FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 124.02 bits (310), Expect = 3.493e-28
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 2

Query:  290 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAGYNIQKEST 487
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+ YNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66

BLAST of FC869228 vs. ExPASy Swiss-Prot
Match: UBIQ_MOUSE (Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.035e-33
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 2

Query:   62 MQIFVKTLTGKTITLEVESSNTIDNVKAKIQDKEGIPPDQQCLFFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 289
            MQIFVKTLTGKTITLEVE S+TI+NVKAKIQDKEGIPPDQQ L FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 124.02 bits (310), Expect = 3.493e-28
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 2

Query:  290 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAGYNIQKEST 487
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+ YNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66

BLAST of FC869228 vs. ExPASy Swiss-Prot
Match: UBIQ_MANSE (Ubiquitin OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.035e-33
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 2

Query:   62 MQIFVKTLTGKTITLEVESSNTIDNVKAKIQDKEGIPPDQQCLFFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 289
            MQIFVKTLTGKTITLEVE S+TI+NVKAKIQDKEGIPPDQQ L FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 124.02 bits (310), Expect = 3.493e-28
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 2

Query:  290 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAGYNIQKEST 487
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+ YNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66

BLAST of FC869228 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.035e-33
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 2

Query:   62 MQIFVKTLTGKTITLEVESSNTIDNVKAKIQDKEGIPPDQQCLFFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 289
            MQIFVKTLTGKTITLEVE S+TI+NVKAKIQDKEGIPPDQQ L FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 124.02 bits (310), Expect = 3.493e-28
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 2

Query:  290 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAGYNIQKEST 487
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+ YNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66

BLAST of FC869228 vs. ExPASy Swiss-Prot
Match: UBIQ_ICTPU (Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.035e-33
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 2

Query:   62 MQIFVKTLTGKTITLEVESSNTIDNVKAKIQDKEGIPPDQQCLFFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 289
            MQIFVKTLTGKTITLEVE S+TI+NVKAKIQDKEGIPPDQQ L FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 124.02 bits (310), Expect = 3.493e-28
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 2

Query:  290 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAGYNIQKEST 487
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+ YNIQKEST
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66

The following BLAST results are available for this feature:

BLAST of FC869228 vs. ExPASy Swiss-Prot

BLAST of FC869228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94


Match Name	E-value	Identity	Description
UBIQ_RABIT	8.035e-33	92.11	Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1	[more]
UBIQ_PONPY	8.035e-33	92.11	Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2	[more]
UBIQ_PLUXY	8.035e-33	92.11	Ubiquitin OS=Plutella xylostella PE=3 SV=1	[more]
UBIQ_PIG	8.035e-33	92.11	Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1	[more]
UBIQ_PANTR	8.035e-33	92.11	Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2	[more]
UBIQ_OPHHA	8.035e-33	92.11	Ubiquitin OS=Ophiophagus hannah PE=3 SV=1	[more]
UBIQ_MOUSE	8.035e-33	92.11	Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1	[more]
UBIQ_MANSE	8.035e-33	92.11	Ubiquitin OS=Manduca sexta PE=3 SV=1	[more]
UBIQ_MACFA	8.035e-33	92.11	Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=...	[more]
UBIQ_ICTPU	8.035e-33	92.11	Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV...	[more]

Pages

Properties


Property Name	Value
Genbank description	C31009H08EF AbioticL1 Citrus clementina cDNA clone C31009H08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC869228 ID=FC869228; Name=FC869228; organism=Citrus clementina; type=EST; length=489bp
TCGGGTTATTCGATATCCTCAACAAATCTCTCCAATTCTCTCGCTAAGAA
ACTTTTAAAAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATT
ACTCTCGAAGTCGAGAGCTCCAACACCATCGACAACGTCAAGGCCAAGAT
CCAAGACAAGGAAGGAATCCCTCCGGACCAGCAGTGTCTGTTCTTCGCCG
GAAAACAGCTCGAAGACGGCCGCACCTTGGCCGATTACAATATCCAAAAG
GAATCGACGCTTCATCTGGTGCTTCGTCTCCGTGGAGGCATGCAGATCTT
CGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGTTGAGAGCTCCG
ACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCG
CCGGACCAGCAGAGGCTGATCTTCGCCGGAAAGCAACTCGAGGACGGCCG
CACCTTGGCCGGATACAATATCCAGAAGGAATCAACTCT