FC869228

Overview
NameFC869228
Unique NameFC869228
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9336 contig Ccv1_Contig9336:8..496. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869228 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.988e-15
Identity = 37/76 (48.68%), Postives = 54/76 (71.05%), Query Frame = 2
Query:   62 MQIFVKTLTGKTITLEVESSNTIDNVKAKIQDKEGIPPDQQCLFFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 289
            M I VKTLTGK I L+++ ++ +  +K ++++KEGIPP QQ L +AGKQ+ D +    Y+++  S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76          

HSP 2 Score: 71.2478 bits (173), Expect = 2.687e-12
Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = 2
Query:  290 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAGYNIQ 475
            M I VKTLTGK I L+++ +D +  +K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++
Sbjct:    1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLE 62          
BLAST of FC869228 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.897e-14
Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 2
Query:   62 MQIFVKTLTGKTITLEVESSNTIDNVKAKIQDKEGIPPDQQCLFFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 289
            M + VKTLTGK I++E++ S+ + ++K  +++KEGIPP QQ L F GKQ++D  T+ D ++ +   LHLVL LRGG
Sbjct:    1 MIVKVKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76          
BLAST of FC869228 vs. ExPASy Swiss-Prot
Match: UBD_HUMAN (Ubiquitin D OS=Homo sapiens GN=UBD PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.575e-12
Identity = 43/143 (30.07%), Postives = 74/143 (51.75%), Query Frame = 2
Query:   68 IFVKTLTGKTITLEVESSNTIDNVKAKIQDKEGIPPDQQCLFFAGKQLEDGRTLADYNIQKESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAGYNIQK 478
            + V++     +T +    +++  +K  ++ K  +P   Q L    K L+  R+L+ Y I KE T+HL L++       + +F+       K   L+V  S ++  VKA I+ K GI P+ Q +   GK+LEDG+ +A Y I+K
Sbjct:   10 VHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRK 152          
BLAST of FC869228 vs. ExPASy Swiss-Prot
Match: UCRP_MOUSE (Ubiquitin cross-reactive protein OS=Mus musculus GN=Isg15 PE=1 SV=4)

HSP 1 Score: 70.0922 bits (170), Expect = 5.987e-12
Identity = 44/139 (31.65%), Postives = 70/139 (50.36%), Query Frame = 2
Query:   74 VKTLTGKTITLEVESSNTIDNVKAKIQDKEGIPPDQQCLFFAGKQLEDGRTLADYNIQKESTLHLVLR-LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAGYNIQKEST 487
            VK L G    + V +S T+  +K +I  K G+P  QQ L      L+DG TL+   +   ST+ LV++     + I V+   G +   EV  + T+D +K K+  +E +  DQ  L F G+ +ED   L  Y ++ + T
Sbjct:    7 VKMLGGNDFLVSVTNSMTVSELKKQIAQKIGVPAFQQRLAHQTAVLQDGLTLSSLGLGPSSTVMLVVQNCSEPLSILVRNERGHSNIYEVFLTQTVDTLKKKVSQREQVHEDQFWLSFEGRPMEDKELLGEYGLKPQCT 145          
The following BLAST results are available for this feature:
BLAST of FC869228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
UBL1_SCHPO1.988e-1548.68Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]
RUB1_YEAST4.897e-1448.68NEDD8-like protein RUB1 OS=Saccharomyces cerevisia... [more]
UBD_HUMAN1.575e-1230.07Ubiquitin D OS=Homo sapiens GN=UBD PE=1 SV=2[more]
UCRP_MOUSE5.987e-1231.65Ubiquitin cross-reactive protein OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionC31009H08EF AbioticL1 Citrus clementina cDNA clone C31009H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869228 ID=FC869228; Name=FC869228; organism=Citrus clementina; type=EST; length=489bp
TCGGGTTATTCGATATCCTCAACAAATCTCTCCAATTCTCTCGCTAAGAA
ACTTTTAAAAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATT
ACTCTCGAAGTCGAGAGCTCCAACACCATCGACAACGTCAAGGCCAAGAT
CCAAGACAAGGAAGGAATCCCTCCGGACCAGCAGTGTCTGTTCTTCGCCG
GAAAACAGCTCGAAGACGGCCGCACCTTGGCCGATTACAATATCCAAAAG
GAATCGACGCTTCATCTGGTGCTTCGTCTCCGTGGAGGCATGCAGATCTT
CGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGTTGAGAGCTCCG
ACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCG
CCGGACCAGCAGAGGCTGATCTTCGCCGGAAAGCAACTCGAGGACGGCCG
CACCTTGGCCGGATACAATATCCAGAAGGAATCAACTCT
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