FC869230

Overview
NameFC869230
Unique NameFC869230
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10221 contig Ccv1_Contig10221:67..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869230 vs. ExPASy Swiss-Prot
Match: PMA2_ARATH (ATPase 2, plasma membrane-type OS=Arabidopsis thaliana GN=AHA2 PE=1 SV=2)

HSP 1 Score: 286.189 bits (731), Expect = 1.118e-76
Identity = 145/217 (66.82%), Postives = 165/217 (76.04%), Query Frame = 2
Query:    5 IIIAILHDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPD 655
            +IIAIL+DGTIMTISKDRVKPSP PDSWKL EIF TG+VLG Y A+MTVIFFWAA+KTDFF   FGV ++    H+    L  A+YLQVS ISQALIFVTRSRSWSFVERPG LL++AFLIAQLIATLIAVYANW F               LY+I+ Y PLD  KF IRY LSG+AW  + E + AFT +KD+GKE+RE QWA AQRTLHGLQP +
Sbjct:  677 LIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFATGVVLGGYQAIMTVIFFWAAHKTDFFSDTFGVRSIRDNNHE----LMGAVYLQVSIISQALIFVTRSRSWSFVERPGALLMIAFLIAQLIATLIAVYANWEFAKIRGIGWGWAGVIWLYSIVTYFPLDVFKFAIRYILSGKAWLNLFENKTAFTMKKDYGKEEREAQWALAQRTLHGLQPKE 889          
BLAST of FC869230 vs. ExPASy Swiss-Prot
Match: PMA3_ARATH (ATPase 3, plasma membrane-type OS=Arabidopsis thaliana GN=AHA3 PE=1 SV=2)

HSP 1 Score: 285.034 bits (728), Expect = 2.491e-76
Identity = 140/218 (64.22%), Postives = 165/218 (75.69%), Query Frame = 2
Query:    5 IIIAILHDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDT 658
            +IIAIL+DGTIMTISKDRVKPSP PDSWKL EIF TG+VLG Y+A+MTV+FFWAAYKTDFFPR F V  L  + H+    + SA+YLQVS +SQALIFVTRSRSWSF ERPG  LL+AF +AQLIAT IAVY NW F               LY+I+FY PLD +KF IRY L+G AW  +I+ R AFT ++++G E+RE QWAHAQRTLHGLQ  +T
Sbjct:  678 LIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFATGVVLGGYMAIMTVVFFWAAYKTDFFPRTFHVRDLRGSEHE----MMSALYLQVSIVSQALIFVTRSRSWSFTERPGYFLLIAFWVAQLIATAIAVYGNWEFARIKGIGWGWAGVIWLYSIVFYFPLDIMKFAIRYILAGTAWKNIIDNRTAFTTKQNYGIEEREAQWAHAQRTLHGLQNTET 891          
BLAST of FC869230 vs. ExPASy Swiss-Prot
Match: PMA1_WHEAT (Plasma membrane ATPase OS=Triticum aestivum GN=ha1 PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 2.491e-76
Identity = 139/217 (64.06%), Postives = 172/217 (79.26%), Query Frame = 2
Query:    5 IIIAILHDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPD 655
            +IIAIL+DGTIMTISKDRVKPSPLPDSWKL EIF TG+VLG+YLA++TV+FFW  +KTDFF   FGV ++  T   +F+++ SA+YLQVS +SQALIFVTRSRSWSFVERPG LL+ AFL+AQL+ATLIAVYANW F               L++I+FY PLD  KFFIR+ LSGRAWD +++ + AFT ++++GK +RE QWA AQRTLHGLQ P+
Sbjct:  677 LIIAILNDGTIMTISKDRVKPSPLPDSWKLNEIFATGVVLGTYLALVTVVFFWLIHKTDFFTNKFGVESIRNT---EFKEM-SALYLQVSIVSQALIFVTRSRSWSFVERPGFLLVTAFLLAQLVATLIAVYANWDFARIKGIGWGWAGVIWLFSIVFYFPLDIFKFFIRFVLSGRAWDNLLQNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPE 889          
BLAST of FC869230 vs. ExPASy Swiss-Prot
Match: PMA6_ARATH (ATPase 6, plasma membrane-type OS=Arabidopsis thaliana GN=AHA6 PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 8.861e-74
Identity = 135/218 (61.93%), Postives = 168/218 (77.06%), Query Frame = 2
Query:    5 IIIAILHDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDT 658
            +IIAIL+DGTIMTISKDRVKPSP+PDSWKL EIF TG+VLG+Y+A++TV+FFW A+ T FF   FGV +L+    +    L + +YLQVS ISQALIFVTRSRSWSFVERPG+LLL+AF +AQLIATLIA YA+W F               +Y+I+ YIPLD +KF  RY LSG+AW+ +IE R AFT +KD+G+ +RE QWA AQRTLHGL+PP++
Sbjct:  679 LIIAILNDGTIMTISKDRVKPSPIPDSWKLKEIFATGVVLGTYMALVTVVFFWLAHDTTFFSDKFGVRSLQGKDEE----LIAVLYLQVSIISQALIFVTRSRSWSFVERPGLLLLIAFFVAQLIATLIATYAHWEFARIKGCGWGWCGVIWIYSIVTYIPLDILKFITRYTLSGKAWNNMIENRTAFTTKKDYGRGEREAQWALAQRTLHGLKPPES 892          
BLAST of FC869230 vs. ExPASy Swiss-Prot
Match: PMA1_ARATH (ATPase 1, plasma membrane-type OS=Arabidopsis thaliana GN=AHA1 PE=1 SV=3)

HSP 1 Score: 274.248 bits (700), Expect = 4.398e-73
Identity = 138/217 (63.59%), Postives = 165/217 (76.04%), Query Frame = 2
Query:    5 IIIAILHDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPD 655
            +IIAIL+DGTIMTISKDRVKPSP PDSWKL EIF TGIVLG Y A+M+VIFFWAA+KTDFF   FGV ++     D+  +L  A+YLQVS ISQALIFVTRSRSWSFVERPG LL++AF+IAQL+ATLIAVYA+W+F               +Y+I+ Y P D +KF IRY LSG+AW  + + R AFT +KD+G  +RE QWA AQRTLHGLQP +
Sbjct:  677 LIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFATGIVLGGYQAIMSVIFFWAAHKTDFFSDKFGVRSIR----DNNDELMGAVYLQVSIISQALIFVTRSRSWSFVERPGALLMIAFVIAQLVATLIAVYADWTFAKVKGIGWGWAGVIWIYSIVTYFPQDILKFAIRYILSGKAWASLFDNRTAFTTKKDYGIGEREAQWAQAQRTLHGLQPKE 889          
BLAST of FC869230 vs. ExPASy Swiss-Prot
Match: PMA5_ARATH (ATPase 5, plasma membrane-type OS=Arabidopsis thaliana GN=AHA5 PE=2 SV=3)

HSP 1 Score: 266.159 bits (679), Expect = 1.198e-70
Identity = 133/217 (61.29%), Postives = 162/217 (74.65%), Query Frame = 2
Query:    5 IIIAILHDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPD 655
            +IIAIL+DGTIMTISKDR+KPSP PDSWKL +IF+TG+VLG Y A+MTV+FFW    +DFF   FGV  L +       ++ +A+YLQVS ISQALIFVTRSRSWS+ E PG+LLL AF+IAQL+AT IAVYANWSF               LY+ + YIPLD +KF IRY LSG+AW  ++E + AFT +KD+GKE+RE QWA AQRTLHGLQP +
Sbjct:  677 LIIAILNDGTIMTISKDRMKPSPQPDSWKLRDIFSTGVVLGGYQALMTVVFFWVMKDSDFFSNYFGVRPLSQRPE----QMMAALYLQVSIISQALIFVTRSRSWSYAECPGLLLLGAFVIAQLVATFIAVYANWSFARIEGAGWGWAGVIWLYSFLTYIPLDLLKFGIRYVLSGKAWLNLLENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPAE 889          
BLAST of FC869230 vs. ExPASy Swiss-Prot
Match: PMA7_ARATH (ATPase 7, plasma membrane-type OS=Arabidopsis thaliana GN=AHA7 PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 8.583e-69
Identity = 135/241 (56.02%), Postives = 172/241 (71.37%), Query Frame = 2
Query:    5 IIIAILHDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATL---------EKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQ----PPDTRCSPSELMNL 688
            ++IAIL+DGTIMTISKDRVKPSP PD WKL EIF TG+VLG+YLA+MTV+FFWAAY+T+FF  +F V            +K A     ++ASA+YLQVSTISQALIFVTRSRSWSFVERPG LL++AFLIAQL+A++I+  ANW F               ++NI+ Y+ LD IKF +RYALSG++WD ++E R A T +K+FG+E+R   WA  +RT HGL+    P   R S +EL N+
Sbjct:  677 LVIAILNDGTIMTISKDRVKPSPTPDCWKLKEIFATGVVLGAYLAIMTVVFFWAAYETNFFHNIFHVRNFNQHHFKMKDKKVAAHLNEQMASAVYLQVSTISQALIFVTRSRSWSFVERPGFLLVIAFLIAQLVASVISAMANWPFAGIRSIGWGWTGVIWIFNIVTYMLLDPIKFLVRYALSGKSWDRMVEGRTALTGKKNFGQEERMAAWATEKRTQHGLETGQKPVYERNSATELNNM 917          
BLAST of FC869230 vs. ExPASy Swiss-Prot
Match: PMA10_ARATH (ATPase 10, plasma membrane-type OS=Arabidopsis thaliana GN=AHA10 PE=2 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 2.503e-60
Identity = 119/209 (56.94%), Postives = 153/209 (73.21%), Query Frame = 2
Query:    5 IIIAILHDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRT 631
            +IIAIL+DGTIMTISKDRV+PSP P+SWKL +IF TGIV+G+YLA++TV+F+W    T FF + F V    K+  ++  +++SA+YLQVS ISQALIFVTRSR WSF ERPG LL+ AF++AQL ATLIAVYAN SF               LY++IFYIPLD IKF   YALSG AW+LV++++ AFT +KD+GK+        +QR+
Sbjct:  684 LIIAILNDGTIMTISKDRVRPSPTPESWKLNQIFATGIVIGTYLALVTVLFYWIIVSTTFFEKHFHV----KSIANNSEQVSSAMYLQVSIISQALIFVTRSRGWSFFERPGTLLIFAFILAQLAATLIAVYANISFAKITGIGWRWAGVIWLYSLIFYIPLDVIKFVFHYALSGEAWNLVLDRKTAFTYKKDYGKDDGSPNVTISQRS 888          
BLAST of FC869230 vs. ExPASy Swiss-Prot
Match: PMAX_ARATH (Putative ATPase, plasma membrane-like OS=Arabidopsis thaliana GN=At4g11730 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.780e-43
Identity = 93/181 (51.38%), Postives = 119/181 (65.75%), Query Frame = 2
Query:    5 IIIAILHDGTIMTISKDRV-KPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSFXXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGRAWDL 544
            + IA+L++ T   I+ D V  PSP PDS KL EIF TG+V GSY+A++TV+FFWAAY+TD FPR F V  L      +  ++  A+YLQVS +SQAL FV +SRSW FVERPG LL ++F+  Q IAT +AVYA+W                 LYNIIF+ PLD +KF IRY L+G+A  L
Sbjct:  589 LAIALLNEETTKAITMDNVTNPSPTPDSLKLKEIFATGVVYGSYMALITVVFFWAAYRTDIFPRTFHVRDL----RGNEAEMMCALYLQVSIMSQALFFVIQSRSWFFVERPGELLFLSFVTVQTIATTLAVYASWETARIEGIGWSWAGVIWLYNIIFFFPLDIMKFGIRYILTGKAQSL 765          
BLAST of FC869230 vs. ExPASy Swiss-Prot
Match: PMA1_DICDI (Probable plasma membrane ATPase OS=Dictyostelium discoideum GN=patB PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.695e-24
Identity = 67/191 (35.08%), Postives = 99/191 (51.83%), Query Frame = 2
Query:    5 IIIAILHDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPRVFGVATLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGILLLVAFLIAQLIATLIAVYANWSF---------------XXXXXXXXXXXXXXXLYNIIFYIPLDFIKFFIRYALSGR 532
            +IIAIL+DGT++TISKDRV+    PD W L E+FT  +  G YL   T++FF   +   +F     +  L         +L   IYLQVS    A IFV+RS+ +S+ ERPG L++ AF+++Q++AT I VY    +                              ++  ++YIP+DFIK  + Y L G+
Sbjct:  817 VIIAILNDGTMLTISKDRVRARNEPDQWNLFEVFTMALCYGFYLVGSTIVFFAIIHDGTWFHDAINLRILTD------NELRGLIYLQVSISGLATIFVSRSQGFSYFERPGNLVIFAFVMSQIVATFIGVYGFRGYPHDSFSDNPDYPVHGTNFQGCGWGWAVCAWIWCFLWYIPMDFIKLGVTYILRGK 1001          
The following BLAST results are available for this feature:
BLAST of FC869230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
PMA2_ARATH1.118e-7666.82ATPase 2, plasma membrane-type OS=Arabidopsis thal... [more]
PMA3_ARATH2.491e-7664.22ATPase 3, plasma membrane-type OS=Arabidopsis thal... [more]
PMA1_WHEAT2.491e-7664.06Plasma membrane ATPase OS=Triticum aestivum GN=ha1... [more]
PMA6_ARATH8.861e-7461.93ATPase 6, plasma membrane-type OS=Arabidopsis thal... [more]
PMA1_ARATH4.398e-7363.59ATPase 1, plasma membrane-type OS=Arabidopsis thal... [more]
PMA5_ARATH1.198e-7061.29ATPase 5, plasma membrane-type OS=Arabidopsis thal... [more]
PMA7_ARATH8.583e-6956.02ATPase 7, plasma membrane-type OS=Arabidopsis thal... [more]
PMA10_ARATH2.503e-6056.94ATPase 10, plasma membrane-type OS=Arabidopsis tha... [more]
PMAX_ARATH2.780e-4351.38Putative ATPase, plasma membrane-like OS=Arabidops... [more]
PMA1_DICDI1.695e-2435.08Probable plasma membrane ATPase OS=Dictyostelium d... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31009H11EF AbioticL1 Citrus clementina cDNA clone C31009H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869230 ID=FC869230; Name=FC869230; organism=Citrus clementina; type=EST; length=689bp
GGAGATTATCATTGCCATCCTGCATGATGGTACAATTATGACAATATCAA
AAGATAGGGTGAAACCGTCTCCTCTGCCAGATAGCTGGAAGCTTGCTGAA
ATTTTTACAACTGGCATTGTTCTTGGCAGTTACTTGGCAATGATGACAGT
TATTTTCTTCTGGGCAGCATATAAAACAGATTTCTTTCCGAGAGTATTTG
GGGTGGCAACCCTTGAGAAAACAGCTCATGATGACTTCCGAAAGCTTGCC
TCAGCAATTTACTTGCAAGTGAGCACTATCAGTCAGGCCCTTATATTCGT
AACACGGTCAAGAAGTTGGTCTTTCGTTGAGCGACCTGGTATATTGCTGC
TTGTGGCTTTTCTGATTGCTCAACTGATTGCTACTCTGATTGCCGTTTAT
GCAAACTGGAGTTTTGCTGCAATTGAAGGGATTGGGTGGGGTTGGGCCGG
TGTGGTCTGGCTTTACAACATCATCTTCTACATCCCACTTGATTTCATTA
AGTTCTTCATACGCTATGCTCTGAGTGGGAGGGCCTGGGATCTTGTTATC
GAGCAGAGGATTGCTTTCACAAGGCAAAAGGATTTTGGTAAGGAACAACG
TGAGCTTCAATGGGCACATGCACAAAGAACATTGCATGGGTTGCAACCAC
CTGATACAAGATGTTCACCGAGCGAACTCATGAACTTAT
back to top