FC869235

Overview
NameFC869235
Unique NameFC869235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_STRM5 (Betaine aldehyde dehydrogenase OS=Stenotrophomonas maltophilia (strain R551-3) GN=betB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 56/157 (35.67%), Postives = 82/157 (52.23%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQK--WDKICYTGNSRVARIVMA-AAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTK 640
            EP GVV  I  WNYP  +++     A+AAGNA+V KPSEV P ++  LA++  E  +      VV+G   E    L +    +KI +TG     + VMA AA+  L  V +ELGGKSP+V     +L  A    +M  +  ++GQ C +   +   +
Sbjct:  141 EPLGVVAGIGAWNYPIQIAMWKSAPALAAGNAMVFKPSEVTPLTAIRLAEIYTEAGVPAGVFNVVQGPGREIGQWLTEHPVIEKISFTGGVATGKKVMASAASSSLKEVTMELGGKSPLVICDDADLDRAADIAVMANF-FSSGQVCTNGTRVFVPR 296          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_SHIF8 (Betaine aldehyde dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=betB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 55/147 (37.41%), Postives = 80/147 (54.42%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQK--WDKICYTGNSRVARIVMA-AAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQAC 610
            EP GVV  I  WNYP  ++L     A+AAGNA++ KPSEV P ++  LA++  E  +      V+ G  AET   L +     K+ +TG     + VMA +AA  L  V +ELGGKSP++     +L +A    +M  +  ++GQ C
Sbjct:  141 EPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYSEAGLPDGVFNVLPGGGAETGQYLTEHPGIAKVSFTGGVASGKKVMANSAASSLKEVTMELGGKSPLIVFDDADLDLAADIAMMANF-FSSGQVC 286          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_RHOS1 (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=betB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 54/157 (34.39%), Postives = 85/157 (54.14%), Query Frame = 2
Query:  176 VPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALL-DQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTK 640
            + EP G+ + I  WNYP  ++      A+A GNA+V KPSEV P  +  LA+++ E  +      VV+G  A  +AL+ D +  K+  TG+    R V AAAA+ +  V +ELGGKSP++     +L+ A    ++G +  + GQ C +   +   K
Sbjct:  138 IREPLGLCVGIGAWNYPSQIACWKAAPALALGNAMVFKPSEVTPLGALKLAEILIEAGLPPGLFNVVQGRGAVGAALVTDSRVAKVSLTGSVPTGRRVYAAAAEGVRHVTMELGGKSPLIVFDDADLESAIGAAMLGNF-YSAGQICSNGTRVFVQK 293          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_ECOSM (Betaine aldehyde dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=betB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 55/147 (37.41%), Postives = 80/147 (54.42%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQK--WDKICYTGNSRVARIVMA-AAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQAC 610
            EP GVV  I  WNYP  ++L     A+AAGNA++ KPSEV P ++  LA++  E  +      V+ G  AET   L +     K+ +TG     + VMA +AA  L  V +ELGGKSP++     +L +A    +M  +  ++GQ C
Sbjct:  141 EPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYSEAGLPDGVFNVLPGVGAETGQYLTEHPGIAKVSFTGGVASGKKVMANSAASSLKEVTMELGGKSPLIVFDDADLDLAADIAMMANF-FSSGQVC 286          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_ECOSE (Betaine aldehyde dehydrogenase OS=Escherichia coli (strain SE11) GN=betB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 55/147 (37.41%), Postives = 80/147 (54.42%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQK--WDKICYTGNSRVARIVMA-AAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQAC 610
            EP GVV  I  WNYP  ++L     A+AAGNA++ KPSEV P ++  LA++  E  +      V+ G  AET   L +     K+ +TG     + VMA +AA  L  V +ELGGKSP++     +L +A    +M  +  ++GQ C
Sbjct:  141 EPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYSEAGLPDGVFNVLPGVGAETGQYLTEHPGIAKVSFTGGVASGKKVMANSAASSLKEVTMELGGKSPLIVFDDADLDLAADIAMMANF-FSSGQVC 286          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_ECOLI (Betaine aldehyde dehydrogenase OS=Escherichia coli (strain K12) GN=betB PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 55/147 (37.41%), Postives = 80/147 (54.42%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQK--WDKICYTGNSRVARIVMA-AAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQAC 610
            EP GVV  I  WNYP  ++L     A+AAGNA++ KPSEV P ++  LA++  E  +      V+ G  AET   L +     K+ +TG     + VMA +AA  L  V +ELGGKSP++     +L +A    +M  +  ++GQ C
Sbjct:  141 EPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYSEAGLPDGVFNVLPGVGAETGQYLTEHPGIAKVSFTGGVASGKKVMANSAASSLKEVTMELGGKSPLIVFDDADLDLAADIAMMANF-FSSGQVC 286          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_ECOHS (Betaine aldehyde dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=betB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 55/147 (37.41%), Postives = 80/147 (54.42%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQK--WDKICYTGNSRVARIVMA-AAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQAC 610
            EP GVV  I  WNYP  ++L     A+AAGNA++ KPSEV P ++  LA++  E  +      V+ G  AET   L +     K+ +TG     + VMA +AA  L  V +ELGGKSP++     +L +A    +M  +  ++GQ C
Sbjct:  141 EPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYSEAGLPDGVFNVLPGVGAETGQYLTEHPGIAKVSFTGGVASGKKVMANSAASSLKEVTMELGGKSPLIVFDDADLDLAADIAMMANF-FSSGQVC 286          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_ECODH (Betaine aldehyde dehydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=betB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 55/147 (37.41%), Postives = 80/147 (54.42%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQK--WDKICYTGNSRVARIVMA-AAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQAC 610
            EP GVV  I  WNYP  ++L     A+AAGNA++ KPSEV P ++  LA++  E  +      V+ G  AET   L +     K+ +TG     + VMA +AA  L  V +ELGGKSP++     +L +A    +M  +  ++GQ C
Sbjct:  141 EPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYSEAGLPDGVFNVLPGVGAETGQYLTEHPGIAKVSFTGGVASGKKVMANSAASSLKEVTMELGGKSPLIVFDDADLDLAADIAMMANF-FSSGQVC 286          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_ECO8A (Betaine aldehyde dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=betB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 55/147 (37.41%), Postives = 80/147 (54.42%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQK--WDKICYTGNSRVARIVMA-AAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQAC 610
            EP GVV  I  WNYP  ++L     A+AAGNA++ KPSEV P ++  LA++  E  +      V+ G  AET   L +     K+ +TG     + VMA +AA  L  V +ELGGKSP++     +L +A    +M  +  ++GQ C
Sbjct:  141 EPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYSEAGLPDGVFNVLPGVGAETGQYLTEHPGIAKVSFTGGVASGKKVMANSAASSLKEVTMELGGKSPLIVFDDADLDLAADIAMMANF-FSSGQVC 286          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_ECO5E (Betaine aldehyde dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=betB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 55/147 (37.41%), Postives = 80/147 (54.42%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQK--WDKICYTGNSRVARIVMA-AAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQAC 610
            EP GVV  I  WNYP  ++L     A+AAGNA++ KPSEV P ++  LA++  E  +      V+ G  AET   L +     K+ +TG     + VMA +AA  L  V +ELGGKSP++     +L +A    +M  +  ++GQ C
Sbjct:  141 EPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYSEAGLPDGVFNVLPGVGAETGQYLTEHPGIAKVSFTGGVASGKKVMANSAASSLKEVTMELGGKSPLIVFDDADLDLAADIAMMANF-FSSGQVC 286          
The following BLAST results are available for this feature:
BLAST of FC869235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 382
Match NameE-valueIdentityDescription
BETB_STRM54.453e-1535.67Betaine aldehyde dehydrogenase OS=Stenotrophomonas... [more]
BETB_SHIF84.453e-1537.41Betaine aldehyde dehydrogenase OS=Shigella flexner... [more]
BETB_RHOS14.453e-1534.39Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]
BETB_ECOSM4.453e-1537.41Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECOSE4.453e-1537.41Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECOLI4.453e-1537.41Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECOHS4.453e-1537.41Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECODH4.453e-1537.41Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECO8A4.453e-1537.41Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECO5E4.453e-1537.41Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31010A04EF AbioticL1 Citrus clementina cDNA clone C31010A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869235 ID=FC869235; Name=FC869235; organism=Citrus clementina; type=EST; length=716bp
GGACATCGTCGACGCTCTTCTCCAAGATCTCGATAAGCCGGAACTTGAAT
CCTCCATTTACGAGGTAGCATTGTTGAAGACTTCTATCAAGTCAGCACTC
AAGGAACTAAAACACTGGATGACACCAGAGAAGGCTAAAACTTCAATTAC
AACTTTTCCTTCATCAGCTGAAATAGTGCCAGAACCATTTGGTGTTGTAT
TAATCATCTCACCATGGAATTATCCTTTCTTGTTGTCTCTCGATCCAGTT
GTTGGGGCTATTGCAGCTGGTAACGCTCTGGTTCTAAAGCCATCTGAAGT
TGCTCCAGCATCGTCTTCATTGCTTGCAAAACTAGTTGGTGAATATATGG
ATTTGTCTTCCATAAGGGTTGTTGAAGGGGCAGTTGCTGAAACGTCTGCA
CTGCTTGATCAAAAGTGGGATAAAATATGTTATACAGGCAATTCAAGAGT
TGCACGCATTGTGATGGCTGCAGCTGCAAAGCATCTAACACCAGTTCTTT
TGGAGCTTGGAGGAAAATCTCCAGTTGTCTTTGATTCGGGCATCAATTTA
AAAGTTGCCTGTAGGCGGATGATTATGGGCAAGTGGGGTTGTAATAATGG
ACAAGCATGCATTTCTCCTGATCACATTATAACGACCAAAGATTTTGCTC
CNAAGCTGCTAGAGTCTCTGAAAAATGAATTGGAGAATTTTTACGGGAAG
AAATCATTGGAATCAA
back to top