FC869235

Overview
NameFC869235
Unique NameFC869235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_ECO57 (Betaine aldehyde dehydrogenase OS=Escherichia coli O157:H7 GN=betB PE=3 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 55/147 (37.41%), Postives = 80/147 (54.42%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQK--WDKICYTGNSRVARIVMA-AAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQAC 610
            EP GVV  I  WNYP  ++L     A+AAGNA++ KPSEV P ++  LA++  E  +      V+ G  AET   L +     K+ +TG     + VMA +AA  L  V +ELGGKSP++     +L +A    +M  +  ++GQ C
Sbjct:  141 EPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYSEAGLPDGVFNVLPGVGAETGQYLTEHPGIAKVSFTGGVASGKKVMANSAASSLKEVTMELGGKSPLIVFDDADLDLAADIAMMANF-FSSGQVC 286          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_ECO55 (Betaine aldehyde dehydrogenase OS=Escherichia coli (strain 55989 / EAEC) GN=betB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 55/147 (37.41%), Postives = 80/147 (54.42%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQK--WDKICYTGNSRVARIVMA-AAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQAC 610
            EP GVV  I  WNYP  ++L     A+AAGNA++ KPSEV P ++  LA++  E  +      V+ G  AET   L +     K+ +TG     + VMA +AA  L  V +ELGGKSP++     +L +A    +M  +  ++GQ C
Sbjct:  141 EPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYSEAGLPDGVFNVLPGVGAETGQYLTEHPGIAKVSFTGGVASGKKVMANSAASSLKEVTMELGGKSPLIVFDDADLDLAADIAMMANF-FSSGQVC 286          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_ECO24 (Betaine aldehyde dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=betB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 55/147 (37.41%), Postives = 80/147 (54.42%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQK--WDKICYTGNSRVARIVMA-AAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQAC 610
            EP GVV  I  WNYP  ++L     A+AAGNA++ KPSEV P ++  LA++  E  +      V+ G  AET   L +     K+ +TG     + VMA +AA  L  V +ELGGKSP++     +L +A    +M  +  ++GQ C
Sbjct:  141 EPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYSEAGLPDGVFNVLPGVGAETGQYLTEHPGIAKVSFTGGVASGKKVMANSAASSLKEVTMELGGKSPLIVFDDADLDLAADIAMMANF-FSSGQVC 286          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: NAHF_PSEU8 (Salicylaldehyde dehydrogenase OS=Pseudomonas sp. (strain C18) GN=doxF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.816e-15
Identity = 54/165 (32.73%), Postives = 87/165 (52.73%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGE---------YMDLSSIRVVEGAVAETSALLDQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTKDFA 649
            +P G +L I PWN   +L+   +   +  GN +V K SE +PA+ +L+ + V E         Y++ S  R  E A A  SA   ++  +I +TG++RV  I+   AA+HL   LLELGGKSP++     ++  A +  + G +    GQ C+S + +I  +  A
Sbjct:  137 QPVGPILSIVPWNGTAVLAARAIAYPLVCGNTVVFKGSEFSPATHALITQCVQEAGLPAGVLNYLNSSPDRSPEIADALISA---KEIRRINFTGSTRVGSIIAQKAAQHLKRCLLELGGKSPLIVLDDADIDAAVKAAVFGSF-LFQGQICMSTERLIVDEKIA 297          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: NAHF_PSEPU (Salicylaldehyde dehydrogenase OS=Pseudomonas putida GN=nahF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.816e-15
Identity = 54/165 (32.73%), Postives = 87/165 (52.73%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGE---------YMDLSSIRVVEGAVAETSALLDQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTKDFA 649
            +P G +L I PWN   +L+   +   +  GN +V K SE +PA+ +L+ + V E         Y++ S  R  E A A  SA   ++  +I +TG++RV  I+   AA+HL   LLELGGKSP++     ++  A +  + G +    GQ C+S + +I  +  A
Sbjct:  137 QPVGPILSIVPWNGTAVLAARAIAYPLVCGNTVVFKGSEFSPATHALITQCVQEAGLPAGVLNYLNSSPDRSPEIADALISA---KEIRRINFTGSTRVGSIIAQKAAQHLKRCLLELGGKSPLIVLDDADIDAAVKAAVFGSF-LFQGQICMSTERLIVDEKIA 297          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: GABD2_MYCUA (Putative succinate-semialdehyde dehydrogenase [NADP+] 2 OS=Mycobacterium ulcerans (strain Agy99) GN=gabD2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.816e-15
Identity = 51/157 (32.48%), Postives = 76/157 (48.41%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTKDFA 649
            +P GVV +ISPWNYP  L+    V A+ AGNA+VLKP    P  +   A+L+    +  +   +V G  +     +    D + +TG+S     +   A + L     ELGGK+ ++   G+NL    +      +  N GQ CIS + I   KD A
Sbjct:  146 QPKGVVGVISPWNYPMTLTASDSVPALIAGNAVVLKPDSQTPYCALACAELLYRAGLPRALYAIVPGPGSVVGTAIADNCDYLMFTGSSATGSRLAERAGRRLIGFSAELGGKNAMIVTRGVNLDKVAKAATRACFS-NAGQLCISIERIYVEKDIA 301          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: AL1L2_HUMAN (Probable 10-formyltetrahydrofolate dehydrogenase ALDH1L2 OS=Homo sapiens GN=ALDH1L2 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.816e-15
Identity = 54/149 (36.24%), Postives = 80/149 (53.69%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKL-VGEYMDLSSIRVVEGAVAETSALLDQKWD--KICYTGNSRVARIVM-AAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACIS 616
            EP GV  II PWNYP ++        +AAGN LVLKP++V P ++   A+L V        I ++ G+       L +  D  K+ +TG++ + + +M + A  +L  V LELGGKSP++  +   L  A  RM MG    N G+ CI+
Sbjct:  583 EPLGVCAIIIPWNYPLMMLAWKSAACLAAGNTLVLKPAQVTPLTALKFAELSVKAGFPKGVINIIPGSGGIAGQRLSEHPDIRKLGFTGSTPIGKQIMKSCAVSNLKKVSLELGGKSPLIIFNDCELDKAV-RMGMGAVFFNKGENCIA 730          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_PSEPF (Betaine aldehyde dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1) GN=betB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.596e-15
Identity = 55/158 (34.81%), Postives = 81/158 (51.27%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQ--KWDKICYTGNSRVARIVMA-AAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKW-----GCNNGQACISPDHI 628
            EP GVV  I  WNYP  ++L     A+AAGNA++ KPSEV   ++  LA++  E  +      V+ G+  E    L +  + +KI +TG +   + VMA A+A  L  V +ELGGKSP++     +L  A    +M  +      C NG     P H+
Sbjct:  141 EPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTTLKLAEIYTEAGVPNGVFNVLTGSGREVGTWLTEHPRIEKISFTGGTDTGKKVMASASASSLKDVTMELGGKSPLIICDDADLDRAADTAMMANFYSSGQVCTNGTRVFVPSHL 298          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_ECOLU (Betaine aldehyde dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=betB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.596e-15
Identity = 55/147 (37.41%), Postives = 79/147 (53.74%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQK--WDKICYTGNSRVARIVMA-AAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQAC 610
            EP GVV  I  WNYP  ++L     A+AAGNA++ KPSEV P ++  LA++  E  +      V+ G  AET   L       K+ +TG     + VMA +AA  L  V +ELGGKSP++     +L +A    +M  +  ++GQ C
Sbjct:  141 EPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYSEAGLPDGVFNVLPGVGAETGQYLTDHPGIAKVSFTGGVASGKKVMANSAASSLKEVTMELGGKSPLIVFDDADLDLAADIAMMANF-FSSGQVC 286          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_ECOL6 (Betaine aldehyde dehydrogenase OS=Escherichia coli O6 GN=betB PE=3 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 7.596e-15
Identity = 55/147 (37.41%), Postives = 79/147 (53.74%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQK--WDKICYTGNSRVARIVMA-AAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQAC 610
            EP GVV  I  WNYP  ++L     A+AAGNA++ KPSEV P ++  LA++  E  +      V+ G  AET   L       K+ +TG     + VMA +AA  L  V +ELGGKSP++     +L +A    +M  +  ++GQ C
Sbjct:  141 EPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYSEAGLPDGVFNVLPGVGAETGQYLTDHPGIAKVSFTGGVASGKKVMANSAASSLKEVTMELGGKSPLIVFDDADLDLAADIAMMANF-FSSGQVC 286          
The following BLAST results are available for this feature:
BLAST of FC869235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 382
Match NameE-valueIdentityDescription
BETB_ECO574.453e-1537.41Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECO554.453e-1537.41Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECO244.453e-1537.41Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
NAHF_PSEU85.816e-1532.73Salicylaldehyde dehydrogenase OS=Pseudomonas sp. (... [more]
NAHF_PSEPU5.816e-1532.73Salicylaldehyde dehydrogenase OS=Pseudomonas putid... [more]
GABD2_MYCUA5.816e-1532.48Putative succinate-semialdehyde dehydrogenase [NAD... [more]
AL1L2_HUMAN5.816e-1536.24Probable 10-formyltetrahydrofolate dehydrogenase A... [more]
BETB_PSEPF7.596e-1534.81Betaine aldehyde dehydrogenase OS=Pseudomonas fluo... [more]
BETB_ECOLU7.596e-1537.41Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECOL67.596e-1537.41Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]

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Properties
Property NameValue
Genbank descriptionC31010A04EF AbioticL1 Citrus clementina cDNA clone C31010A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869235 ID=FC869235; Name=FC869235; organism=Citrus clementina; type=EST; length=716bp
GGACATCGTCGACGCTCTTCTCCAAGATCTCGATAAGCCGGAACTTGAAT
CCTCCATTTACGAGGTAGCATTGTTGAAGACTTCTATCAAGTCAGCACTC
AAGGAACTAAAACACTGGATGACACCAGAGAAGGCTAAAACTTCAATTAC
AACTTTTCCTTCATCAGCTGAAATAGTGCCAGAACCATTTGGTGTTGTAT
TAATCATCTCACCATGGAATTATCCTTTCTTGTTGTCTCTCGATCCAGTT
GTTGGGGCTATTGCAGCTGGTAACGCTCTGGTTCTAAAGCCATCTGAAGT
TGCTCCAGCATCGTCTTCATTGCTTGCAAAACTAGTTGGTGAATATATGG
ATTTGTCTTCCATAAGGGTTGTTGAAGGGGCAGTTGCTGAAACGTCTGCA
CTGCTTGATCAAAAGTGGGATAAAATATGTTATACAGGCAATTCAAGAGT
TGCACGCATTGTGATGGCTGCAGCTGCAAAGCATCTAACACCAGTTCTTT
TGGAGCTTGGAGGAAAATCTCCAGTTGTCTTTGATTCGGGCATCAATTTA
AAAGTTGCCTGTAGGCGGATGATTATGGGCAAGTGGGGTTGTAATAATGG
ACAAGCATGCATTTCTCCTGATCACATTATAACGACCAAAGATTTTGCTC
CNAAGCTGCTAGAGTCTCTGAAAAATGAATTGGAGAATTTTTACGGGAAG
AAATCATTGGAATCAA
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