FC869235

Overview
NameFC869235
Unique NameFC869235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_ECO45 (Betaine aldehyde dehydrogenase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=betB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.596e-15
Identity = 55/147 (37.41%), Postives = 79/147 (53.74%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQK--WDKICYTGNSRVARIVMA-AAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQAC 610
            EP GVV  I  WNYP  ++L     A+AAGNA++ KPSEV P ++  LA++  E  +      V+ G  AET   L       K+ +TG     + VMA +AA  L  V +ELGGKSP++     +L +A    +M  +  ++GQ C
Sbjct:  141 EPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYSEAGLPDGVFNVLPGVGAETGQYLTDHPGIAKVSFTGGVASGKKVMANSAASSLKEVTMELGGKSPLIVFDDADLDLAADITMMANF-FSSGQVC 286          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_ECO27 (Betaine aldehyde dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=betB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.596e-15
Identity = 55/147 (37.41%), Postives = 79/147 (53.74%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQK--WDKICYTGNSRVARIVMA-AAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQAC 610
            EP GVV  I  WNYP  ++L     A+AAGNA++ KPSEV P ++  LA++  E  +      V+ G  AET   L       K+ +TG     + VMA +AA  L  V +ELGGKSP++     +L +A    +M  +  ++GQ C
Sbjct:  141 EPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYSEAGLPDGVFNVLPGVGAETGQYLTDHPGIAKVSFTGGVASGKKVMANSAASSLKEVTMELGGKSPLIVFDDADLDLAADIAMMANF-FSSGQVC 286          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: AL1A1_MOUSE (Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1 PE=1 SV=5)

HSP 1 Score: 80.8777 bits (198), Expect = 7.596e-15
Identity = 57/169 (33.73%), Postives = 91/169 (53.85%), Query Frame = 2
Query:  152 TFPSSAEIVP----EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEG----AVAETSALLDQKWDKICYTGNSRVARIVMAAAAK-HLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHI 628
            T PS  +I      EP GV   I PWN+P L+ +  +  A++ GN +V+KP+E  P ++  LA L+ E       + +V G    A A  S+ +D   DK+ +TG+++V +++  AA K +L  V LELGGKSP +  +  +L +A      G +  + GQ C++   I
Sbjct:  144 TIPSDGDIFTYTRREPIGVCGQIIPWNFPMLMFIWKIGPALSCGNTVVVKPAEQTPLTALHLASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDV--DKVAFTGSTQVGKLIKEAAGKSNLKRVTLELGGKSPCIVFADADLDIAVEFAHHGVF-YHQGQCCVAASRI 309          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: DMPC_PSEUF (2-hydroxymuconic semialdehyde dehydrogenase OS=Pseudomonas sp. (strain CF600) GN=dmpC PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.921e-15
Identity = 56/159 (35.22%), Postives = 83/159 (52.20%), Query Frame = 2
Query:  176 VPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSI-----RVVEGAVAETS-ALLDQKWD--KICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHI 628
            V  P GV+ +ISPWN P LL    V  A+A GN +V+KPSE  P +++LL    GE M  + +      VV G   +++ A L +  D   I +TG +R    +M AAAK + PV  ELGGK+  +  +  +L  A    +   +  N GQ C+  + +
Sbjct:  141 VRRPKGVIGVISPWNLPLLLMTWKVGPALACGNTVVVKPSEETPLTTALL----GEVMQAAGVPAGVYNVVHGFGPDSAGAFLTEHPDVNAITFTGETRTGEAIMRAAAKGVRPVSFELGGKNAGIVFADCDLDKAIEGSMRSVF-ANGGQVCLGTERL 294          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_RHOS4 (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=betB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.921e-15
Identity = 53/157 (33.76%), Postives = 85/157 (54.14%), Query Frame = 2
Query:  176 VPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALL-DQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTK 640
            + EP G+ + I  WNYP  ++      A+A GNA+V KPSEV P  +  LA+++ E  +      VV+G  A  ++L+ D +  K+  TG+    R V AAAA+ +  V +ELGGKSP++     +L+ A    ++G +  + GQ C +   +   K
Sbjct:  138 IREPLGLCVGIGAWNYPSQIACWKAAPALALGNAMVFKPSEVTPLGALKLAEILIEAGLPPGLFNVVQGRGAVGASLVTDSRVAKVSLTGSVPTGRRVYAAAAEGVRHVTMELGGKSPLIVFDDADLESAIGAAMLGNF-YSAGQICSNGTRVFVQK 293          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: ALDH_EMENI (Aldehyde dehydrogenase OS=Emericella nidulans GN=aldA PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.921e-15
Identity = 59/155 (38.06%), Postives = 83/155 (53.55%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQKW--DKICYTGNSRVARIVMAAAAK-HLTPVLLELGGKSP-VVFDSGINLKVACRRMIMGKWGCNNGQACISPDHII 631
            EP GV   I PWN+P L+    +  A+AAGN +VLK +E  P S+   AKL+ E       I V+ G      A +      DK+ +TG++ V R ++ AAAK +L  V LELGGKSP +VFD   ++  A      G +  N+GQ C +   I+
Sbjct:  153 EPVGVCGQIIPWNFPLLMWSWKIGPAVAAGNTVVLKTAEQTPLSALYAAKLIKEAGFPAGVINVISGFGRTAGAAISSHMDIDKVAFTGSTLVGRTILQAAAKSNLKKVTLELGGKSPNIVFDDA-DIDNAISWANFGIF-FNHGQCCCAGSRIL 305          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_RHOSK (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=betB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 53/157 (33.76%), Postives = 84/157 (53.50%), Query Frame = 2
Query:  176 VPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALL-DQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTK 640
            + EP G+ + I  WNYP  ++      A+A GNA+V KPSEV P  +  LA+++ E  +      VV+G     +AL+ D +  K+  TG+    R V AAAA+ +  V +ELGGKSP++     +L+ A    ++G +  + GQ C +   +   K
Sbjct:  138 IREPLGLCVGIGAWNYPSQIACWKAAPALALGNAMVFKPSEVTPLGALKLAEILIEAGLPPGLFNVVQGRGGVGAALVTDSRVAKVSLTGSVPTGRRVYAAAAEGVRHVTMELGGKSPLIVFDDADLESAIGAAMLGNF-YSAGQICSNGTRVFVQK 293          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: ALDH_ENCBU (Aldehyde dehydrogenase OS=Enchytraeus buchholzi GN=ALDH PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 60/161 (37.27%), Postives = 85/161 (52.80%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQKWD--KICYTGNSRVARIVMAAAAK-HLTPVLLELGGKSP-VVF-DSGINLKV-ACRRMIMGKWGCNNGQACISPDHIITTKD 643
            EP GVV  I+PWN+P  L+   +  AIAAG  LVLKP+E  P ++  LA LV +       I +V G      A L    D  KI +TG++ V ++++  + K +L  V LELGGKSP ++F DS ++  V    + IM     N GQ C +       +D
Sbjct:  155 EPVGVVGAITPWNFPLHLAASKIAPAIAAGCTLVLKPAEQTPLTALYLASLVKQAGFPAGVINIVPGLGHTAGAALTNHPDINKITFTGSTEVGQLIIQGSGKTNLKRVTLELGGKSPNIIFPDSDLDYAVEVSHQAIM----ANMGQVCCAGSRTFVHED 311          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: ALDA_STAHJ (Putative aldehyde dehydrogenase aldA OS=Staphylococcus haemolyticus (strain JCSC1435) GN=aldA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 58/201 (28.86%), Postives = 95/201 (47.26%), Query Frame = 2
Query:   35 KPELESSIYEVALLKTSIKSALKELKHWMTPEKAKTSITTFPSSAEIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIRVVEGAVAETSALL--DQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHII 631
            KP  E+S  +V L     K     L    T ++   +     + + +V EP GVV  +  WN+P LL+   +  A+AAGN +V++PS   P S   LAK+  E +    + V+ G  +E+   +   +  +K+ +TG++ V   V  A A+ + P  LELGGKS  +     NL        +G    N G+ C +   ++
Sbjct:  103 KPYRETSTIDVPLTANQFKYFASVL----TTDEGSVNEIDENTMSLVVNEPVGVVGAVVAWNFPILLASWKLAPALAAGNTIVIQPSSSTPLSLIELAKIFQEVLPKGVVNVLTGKGSESGDAIFNHEGVNKLSFTGSTDVGYGVAKAGAERIVPTTLELGGKSANIIFDDANLDQVVEGAQLGIL-FNQGEVCSAGSRLL 298          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: AL1A1_RAT (Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Aldh1a1 PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 56/169 (33.14%), Postives = 91/169 (53.85%), Query Frame = 2
Query:  152 TFPSSAEIVP----EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEG----AVAETSALLDQKWDKICYTGNSRVARIVMAAAAK-HLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHI 628
            T PS  +I      EP GV   I PWN+P L+ +  +  A++ GN +V+KP+E  P ++  +A L+ E       + +V G    A A  S+ +D   DK+ +TG+++V +++  AA K +L  V LELGGKSP +  +  +L +A      G +  + GQ C++   I
Sbjct:  144 TIPSDGDIFTFTRREPIGVCGQIIPWNFPLLMFIWKIGPALSCGNTVVVKPAEQTPLTALHMASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDV--DKVAFTGSTQVGKLIKEAAGKSNLKRVTLELGGKSPCIVFADADLDIAVEFAHHGVF-YHQGQCCVAASRI 309          
The following BLAST results are available for this feature:
BLAST of FC869235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 382
Match NameE-valueIdentityDescription
BETB_ECO457.596e-1537.41Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECO277.596e-1537.41Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
AL1A1_MOUSE7.596e-1533.73Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1... [more]
DMPC_PSEUF9.921e-1535.222-hydroxymuconic semialdehyde dehydrogenase OS=Pse... [more]
BETB_RHOS49.921e-1533.76Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]
ALDH_EMENI9.921e-1538.06Aldehyde dehydrogenase OS=Emericella nidulans GN=a... [more]
BETB_RHOSK1.296e-1433.76Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]
ALDH_ENCBU1.296e-1437.27Aldehyde dehydrogenase OS=Enchytraeus buchholzi GN... [more]
ALDA_STAHJ1.296e-1428.86Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]
AL1A1_RAT1.296e-1433.14Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Al... [more]

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Properties
Property NameValue
Genbank descriptionC31010A04EF AbioticL1 Citrus clementina cDNA clone C31010A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869235 ID=FC869235; Name=FC869235; organism=Citrus clementina; type=EST; length=716bp
GGACATCGTCGACGCTCTTCTCCAAGATCTCGATAAGCCGGAACTTGAAT
CCTCCATTTACGAGGTAGCATTGTTGAAGACTTCTATCAAGTCAGCACTC
AAGGAACTAAAACACTGGATGACACCAGAGAAGGCTAAAACTTCAATTAC
AACTTTTCCTTCATCAGCTGAAATAGTGCCAGAACCATTTGGTGTTGTAT
TAATCATCTCACCATGGAATTATCCTTTCTTGTTGTCTCTCGATCCAGTT
GTTGGGGCTATTGCAGCTGGTAACGCTCTGGTTCTAAAGCCATCTGAAGT
TGCTCCAGCATCGTCTTCATTGCTTGCAAAACTAGTTGGTGAATATATGG
ATTTGTCTTCCATAAGGGTTGTTGAAGGGGCAGTTGCTGAAACGTCTGCA
CTGCTTGATCAAAAGTGGGATAAAATATGTTATACAGGCAATTCAAGAGT
TGCACGCATTGTGATGGCTGCAGCTGCAAAGCATCTAACACCAGTTCTTT
TGGAGCTTGGAGGAAAATCTCCAGTTGTCTTTGATTCGGGCATCAATTTA
AAAGTTGCCTGTAGGCGGATGATTATGGGCAAGTGGGGTTGTAATAATGG
ACAAGCATGCATTTCTCCTGATCACATTATAACGACCAAAGATTTTGCTC
CNAAGCTGCTAGAGTCTCTGAAAAATGAATTGGAGAATTTTTACGGGAAG
AAATCATTGGAATCAA
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