FC869235

Overview
NameFC869235
Unique NameFC869235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: SSDH_ORYSJ (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Oryza sativa subsp. japonica GN=ALDH5F1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.692e-14
Identity = 50/156 (32.05%), Postives = 83/156 (53.21%), Query Frame = 2
Query:  173 IVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQKWD--KICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHII 631
            ++ +P GVV  ++PWN+P  +    V  A+A G  +V+KPSE  P ++   A L  +  +   +I VV G   E    L Q     KI +TG++ V + +MA +A  +  V LELGG +P +     ++ VA +  +  K+  N+GQ C+  + I+
Sbjct:  185 VLKQPVGVVGAVTPWNFPLAMITRKVGPALACGCTVVVKPSEFTPLTALAAADLALQAGIPAGAINVVMGNAPEIGDALLQSTQVRKITFTGSTAVGKKLMAGSANTVKKVSLELGGNAPCIVFDDADIDVAIKGSLAAKFR-NSGQTCVCANRIL 339          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: PUUC_ECOLI (Gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli (strain K12) GN=puuC PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.692e-14
Identity = 73/222 (32.88%), Postives = 110/222 (49.55%), Query Frame = 2
Query:   14 ALLQDLD--KPELESSIYEVALLKTSIKSALKELKHWMTP-EKAKTSITTFPSS--AEIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQ--KWDKICYTGNSRVAR-IVMAAAAKHLTPVLLELGGKSP-VVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTKDFA 649
            ALL+ LD  KP   S       L+  I  A + ++ +    +K    + T  S   A IV EP GV+  I PWN+P LL+   +  A+AAGN+++LKPSE +P S+  LA L  E  +    + VV G   E    L +    D I +TG++R  + ++  A   ++  V LE GGKS  +VF    +L+ A      G +  N GQ CI+   ++  +  A
Sbjct:  102 ALLETLDTGKPIRHS-------LRDDIPGAARAIRWYAEAIDKVYGEVATTSSHELAMIVREPVGVIAAIVPWNFPLLLTCWKLGPALAAGNSVILKPSEKSPLSAIRLAGLAKEAGLPDGVLNVVTGFGHEAGQALSRHNDIDAIAFTGSTRTGKQLLKDAGDSNMKRVWLEAGGKSANIVFADCPDLQQAASATAAGIF-YNQGQVCIAGTRLLLEESIA 315          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: AMNC_PSESP (2-aminomuconic 6-semialdehyde dehydrogenase OS=Pseudomonas sp. GN=amnC PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.692e-14
Identity = 52/153 (33.99%), Postives = 83/153 (54.25%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSA-LLDQKWD--KICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHI 628
            +P GVV +ISPWN P LL    V  A+A GNA+V+KPSE  P +++LLA+++    +      +V G    ++   + Q  D   I +TG S+    +M AAA+ + PV  ELGGK+  V  +  + +     M+   +  N+GQ C+  + +
Sbjct:  141 KPLGVVGVISPWNLPLLLLTWKVAPALACGNAVVVKPSEDTPGTATLLAEVMEAVGIPPGVFNLVHGFGPNSAGEFISQHPDISAITFTGESKTGSTIMRAAAEGVKPVSFELGGKNAAVIFADCDFEKMLDGMMRALF-LNSGQVCLCSERV 292          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: ALDA_STAES (Putative aldehyde dehydrogenase aldA OS=Staphylococcus epidermidis (strain ATCC 12228) GN=aldA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.692e-14
Identity = 50/155 (32.26%), Postives = 81/155 (52.26%), Query Frame = 2
Query:  173 IVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIRVVEGAVAETSALL--DQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHII 631
            +V EP GVV  +  WN+P LL+   +  A+AAGN +V++PS   P S   LAK+  E +    + V+ G  +E+   +   +  DK+ +TG++ V   V  A A+ + P  LELGGKS  +     NL+     + +G    N G+ C +   ++
Sbjct:  145 VVNEPVGVVGAVVAWNFPILLASWKLGPALAAGNTVVIQPSSSTPLSLIELAKIFQEVLPKGVVNVLTGKGSESGDAIFHHEGVDKLSFTGSTDVGYGVAQAGAERIVPTTLELGGKSANIIFDDANLEQVIEGVQLGIL-FNQGEVCSAGSRLL 298          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: ALDA_STAEQ (Putative aldehyde dehydrogenase aldA OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=aldA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.692e-14
Identity = 50/155 (32.26%), Postives = 81/155 (52.26%), Query Frame = 2
Query:  173 IVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIRVVEGAVAETSALL--DQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHII 631
            +V EP GVV  +  WN+P LL+   +  A+AAGN +V++PS   P S   LAK+  E +    + V+ G  +E+   +   +  DK+ +TG++ V   V  A A+ + P  LELGGKS  +     NL+     + +G    N G+ C +   ++
Sbjct:  145 VVNEPVGVVGAVVAWNFPILLASWKLGPALAAGNTVVIQPSSSTPLSLIELAKIFQEVLPKGVVNVLTGKGSESGDAIFHHEGVDKLSFTGSTDVGYGVAQAGAERIVPTTLELGGKSANIIFDDANLEQVIEGVQLGIL-FNQGEVCSAGSRLL 298          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_PSEF5 (Betaine aldehyde dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=betB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.210e-14
Identity = 53/158 (33.54%), Postives = 81/158 (51.27%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQ--KWDKICYTGNSRVARIVMA-AAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKW-----GCNNGQACISPDHI 628
            EP GVV  I  WNYP  ++L     A+AAGNA++ KPSEV   ++  LA++  E  +      V+ G+  E    L +  + +K+ +TG +   + VMA A++  L  V +ELGGKSP++     +L  A    +M  +      C NG     P H+
Sbjct:  141 EPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTTLKLAEIYTEAGLPDGVFNVLTGSGREVGTWLTEHPRIEKVSFTGGTDTGKKVMASASSSSLKDVTMELGGKSPLIIFDDADLDRAADTAMMANFYSSGQVCTNGTRVFVPSHL 298          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: LADH_METVS (Lactaldehyde dehydrogenase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=Mevan_0796 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.887e-14
Identity = 51/174 (29.31%), Postives = 90/174 (51.72%), Query Frame = 2
Query:  152 TFPSSAEIV---PEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIR-------VVEGAVAETSALLDQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTKD 643
            T PS  EI+    EP GVV  I+P+N+P  L    +  AIA GNA+VL PS  AP ++  L K++   +   +I           G +       ++K + + +TG+  V  ++  + + ++  V LELGG +P++     ++++A +  +  K+  N+GQ CIS   +I  ++
Sbjct:  115 TIPSENEIIFTKKEPVGVVGAITPFNFPLNLITHKIGPAIATGNAVVLHPSSKAPITAIYLTKVIEHVLKKMNIERGVFNLTTGNGEIVGDEIAKNEKINFLSFTGSVEVGELI--SKSSYMKKVALELGGNNPLIVLKDSDIELAAKSAVKSKF-LNSGQVCISVGKVIVEEE 285          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_VIBVU (Betaine aldehyde dehydrogenase OS=Vibrio vulnificus GN=betB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.887e-14
Identity = 57/181 (31.49%), Postives = 91/181 (50.28%), Query Frame = 2
Query:    2 DIVDALLQDLDKPELESSIYEVALLKTSIKSALKELKHWMTPEKAKTSITTFPSSAEIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSAL-LDQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSP-VVFD 535
            ++ +  ++D  KP  E+S+ ++A     +      L + +  E+       F  +     EP G+   I  WNYP  +++     A+AAGNA++ KPSE  P S+  LA+L  +  +      VV+G       L    + DK+ +TG S   + VMA +A  L PV +ELGGKSP ++FD
Sbjct:   82 ELAELEVRDTGKPIQEASVVDIAT-GADVIEYFAGLVNGLGGEQQSLGSNQFFYTRR---EPLGICAGIGAWNYPIQIAMWKAAPALAAGNAMIFKPSEETPLSALKLAELFTQAGVPDGVFNVVQGDYRVGQMLTAHPEIDKVSFTGESGTGKKVMADSAATLKPVTMELGGKSPLIIFD 258          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: AL1A3_MOUSE (Aldehyde dehydrogenase family 1 member A3 OS=Mus musculus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.887e-14
Identity = 55/169 (32.54%), Postives = 87/169 (51.48%), Query Frame = 2
Query:  152 TFPSSAEIV----PEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQ--KWDKICYTGNSRVARIVMAAAAK-HLTPVLLELGGKSP--VVFDSGINLKVACRRMIMGKWGCNNGQACISPDHI 628
            T P+   +V     EP GV   I+PWN+P L+    +  A+  GN +VLKP+E  P ++  LA L+ E       + +V G      A +    + +KI +TG++ V ++V  AA++ +L  V LELGGK+P  V  D+ ++L V C    +     N GQ C +   +
Sbjct:  155 TIPTDDNVVCFTRHEPIGVCGAITPWNFPLLMLAWKLAPALCCGNTVVLKPAEQTPLTALYLASLIKEVGFPPGVVNIVPGFGPTVGAAISSHPQINKIAFTGSTEVGKLVREAASRSNLKRVTLELGGKNPCIVCADADLDLAVECAHQGV---FFNQGQCCTAASRV 320          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_PSEFS (Betaine aldehyde dehydrogenase OS=Pseudomonas fluorescens (strain SBW25) GN=betB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.770e-14
Identity = 53/158 (33.54%), Postives = 81/158 (51.27%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQ--KWDKICYTGNSRVARIVMA-AAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKW-----GCNNGQACISPDHI 628
            EP GVV  I  WNYP  ++L     A+AAGNA++ KPSEV   ++  LA++  E  +      V+ G+  E    L +  + +K+ +TG +   + VMA A++  L  V +ELGGKSP++     +L  A    +M  +      C NG     P H+
Sbjct:  141 EPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTTLKLAEIYTEAGVPAGVFNVLTGSGREVGTWLTEHPRIEKVSFTGGTDTGKKVMASASSSSLKEVTMELGGKSPLIVFEDADLDRAADIAMMANFYSSGQVCTNGTRVFVPKHL 298          
The following BLAST results are available for this feature:
BLAST of FC869235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 382
Match NameE-valueIdentityDescription
SSDH_ORYSJ1.692e-1432.05Succinate-semialdehyde dehydrogenase, mitochondria... [more]
PUUC_ECOLI1.692e-1432.88Gamma-glutamyl-gamma-aminobutyraldehyde dehydrogen... [more]
AMNC_PSESP1.692e-1433.992-aminomuconic 6-semialdehyde dehydrogenase OS=Pse... [more]
ALDA_STAES1.692e-1432.26Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]
ALDA_STAEQ1.692e-1432.26Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]
BETB_PSEF52.210e-1433.54Betaine aldehyde dehydrogenase OS=Pseudomonas fluo... [more]
LADH_METVS2.887e-1429.31Lactaldehyde dehydrogenase OS=Methanococcus vannie... [more]
BETB_VIBVU2.887e-1431.49Betaine aldehyde dehydrogenase OS=Vibrio vulnificu... [more]
AL1A3_MOUSE2.887e-1432.54Aldehyde dehydrogenase family 1 member A3 OS=Mus m... [more]
BETB_PSEFS3.770e-1433.54Betaine aldehyde dehydrogenase OS=Pseudomonas fluo... [more]

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Properties
Property NameValue
Genbank descriptionC31010A04EF AbioticL1 Citrus clementina cDNA clone C31010A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869235 ID=FC869235; Name=FC869235; organism=Citrus clementina; type=EST; length=716bp
GGACATCGTCGACGCTCTTCTCCAAGATCTCGATAAGCCGGAACTTGAAT
CCTCCATTTACGAGGTAGCATTGTTGAAGACTTCTATCAAGTCAGCACTC
AAGGAACTAAAACACTGGATGACACCAGAGAAGGCTAAAACTTCAATTAC
AACTTTTCCTTCATCAGCTGAAATAGTGCCAGAACCATTTGGTGTTGTAT
TAATCATCTCACCATGGAATTATCCTTTCTTGTTGTCTCTCGATCCAGTT
GTTGGGGCTATTGCAGCTGGTAACGCTCTGGTTCTAAAGCCATCTGAAGT
TGCTCCAGCATCGTCTTCATTGCTTGCAAAACTAGTTGGTGAATATATGG
ATTTGTCTTCCATAAGGGTTGTTGAAGGGGCAGTTGCTGAAACGTCTGCA
CTGCTTGATCAAAAGTGGGATAAAATATGTTATACAGGCAATTCAAGAGT
TGCACGCATTGTGATGGCTGCAGCTGCAAAGCATCTAACACCAGTTCTTT
TGGAGCTTGGAGGAAAATCTCCAGTTGTCTTTGATTCGGGCATCAATTTA
AAAGTTGCCTGTAGGCGGATGATTATGGGCAAGTGGGGTTGTAATAATGG
ACAAGCATGCATTTCTCCTGATCACATTATAACGACCAAAGATTTTGCTC
CNAAGCTGCTAGAGTCTCTGAAAAATGAATTGGAGAATTTTTACGGGAAG
AAATCATTGGAATCAA
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