FC869235

Overview
NameFC869235
Unique NameFC869235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: ALDH_MYCBO (Probable aldehyde dehydrogenase OS=Mycobacterium bovis GN=Mb0467 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.338e-19
Identity = 58/160 (36.25%), Postives = 84/160 (52.50%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIRVVEGAVAETSALL--DQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINL--KVACRRMIMG--KWGCNNGQACISPDHIITTKD 643
            EP GVV  I PWN+P L++   +  A+AAGN  VLKP+E  PAS   L  L+G+ +    + VV G  AE    L    +  K+ +TG +   R++M  A+ +L PV LELGGKSP +F + +       C + + G   +  N G+ C  P   +   D
Sbjct:  154 EPLGVVGQIIPWNFPILMAAWKLAPALAAGNTAVLKPAEQTPASVLYLMSLIGDLLPPGVVNVVNGFGAEAGKPLASSDRIAKVAFTGETTTGRLIMQYASHNLIPVTLELGGKSPNIFFADVLAAHDDFCDKALEGFTMFALNQGEVCTCPSRSLIQAD 313          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BADH_ATRHO (Betaine aldehyde dehydrogenase, chloroplastic OS=Atriplex hortensis PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.132e-18
Identity = 56/177 (31.64%), Postives = 94/177 (53.11%), Query Frame = 2
Query:  128 EKAKTSITTFPSSAEIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSA--LLDQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTKDFA 649
            +KA  ++      + ++ +P GVV +ISPWNYP L+    +  A+AAG   VLKPSE+A  +     ++  E  +    + ++ G   +  A  +     DK+ +TG+S     +MA+AA+ + PV LELGGKSPV+    I+++ A    + G +   NGQ C +   ++  +  A
Sbjct:  134 QKAPVTLPMERFKSHVLRQPIGVVGLISPWNYPLLMDTWKIAPALAAGCTTVLKPSELASVTCLEFGEVCNEVGLPPGVLNILTGLGPDAGAPIVSHPDIDKVAFTGSSATGSKIMASAAQLVKPVTLELGGKSPVIMFEDIDIETAVEWTLFGVF-WTNGQICSATSRLLVHESIA 309          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: DHA2_RALEH (Acetaldehyde dehydrogenase 2 OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=acoD PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.479e-18
Identity = 48/119 (40.34%), Postives = 73/119 (61.34%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIRVVEGAVAETSALL--DQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVF 532
            EP GVV  I PWN+P L++   +  A+AAGN +VLKP+E  PAS  +L +++G+ +    + V+ G   E    L    +  K+ +TG +   R++M  A+++L PV LELGGKSP +F
Sbjct:  153 EPLGVVGQIIPWNFPLLMATWKLAPALAAGNCVVLKPAEQTPASILVLMEVIGDLLPPGVVNVINGFGLEAGKPLASSPRISKVAFTGETTTGRLIMQYASQNLIPVTLELGGKSPNIF 271          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BADH_AMAHP (Betaine aldehyde dehydrogenase, chloroplastic OS=Amaranthus hypochondriacus GN=BADH4 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.479e-18
Identity = 59/177 (33.33%), Postives = 94/177 (53.11%), Query Frame = 2
Query:  128 EKAKTSITTFPSSAEIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALL--DQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTKDFA 649
            +KA  ++        ++ +P GVV +ISPWNYP L++   V  A+AAG + VLKPSE+A  +   LA++  E  +    + ++ G   E    L      DK+ +TG++     VM++AA+ + PV LELGGKSP+V    ++L  A      G +   NGQ C +   ++  +  A
Sbjct:  132 QKAPIALPMDTFKCHVLKQPIGVVGLISPWNYPLLMATWKVAPALAAGCSAVLKPSELASVTCLELAEVCREVGLPPGVLNILTGLGPEAGGPLACHPDVDKVAFTGSTATGSKVMSSAAQLVKPVTLELGGKSPIVIFEDVDLDKAAEWTAFGCF-WTNGQICSATSRLLVHESIA 307          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: AL221_ARATH (Aldehyde dehydrogenase 22A1 OS=Arabidopsis thaliana GN=ALDH22A1 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.932e-18
Identity = 61/219 (27.85%), Postives = 103/219 (47.03%), Query Frame = 2
Query:    5 IVDALLQDLDKPELESSIYEVALLKTSIKSALKELKHWMTPEKAKTSITTFPSSAEIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIRVVEGAV------AETSALLDQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTKD 643
            I +   +D  K  +++S+ E+      I   L E + W+ PE   +        + +   P GV+  I PWNYPF    +P++ A+ +GN +V+K SE A  S     +++     L+++   E  V      AET   L    DK+ + G++ V +++M  AA+ LTPV LELGGK   +     ++    +  + G    ++GQ C   +     KD
Sbjct:  128 ICEVSSRDTGKTMVDASLGEIMTTCEKITWLLSEGERWLKPESRSSGRAMLHKVSRVEFHPLGVIGAIVPWNYPFHNIFNPMLAAVFSGNGIVIKVSEHASWSGCFYFRII--QAALAAVGAPENLVDVITGFAETGEALVSSVDKMIFVGSTAVGKMIMRNAAETLTPVTLELGGKDAFIICEDADVSHVAQVAVRGTLQ-SSGQNCAGAERFYVHKD 343          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BADH1_ARATH (Betaine aldehyde dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=ALDH10A8 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.523e-18
Identity = 59/177 (33.33%), Postives = 95/177 (53.67%), Query Frame = 2
Query:  128 EKAKTSITTFPSSAEIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQK--WDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTKDFA 649
            +KA  S+      + ++ +P GVV +I+PWNYP L+++  V  ++AAG   +LKPSE+A  +   LA +  E  +    + V+ G  +E  A L      DKI +TG+      VM AAA+ + PV +ELGGKSP++    ++L  A    + G +   NGQ C +   ++  +  A
Sbjct:  132 QKAPVSLPMESFKSYVLKQPLGVVGLITPWNYPLLMAVWKVAPSLAAGCTAILKPSELASVTCLELADICREVGLPPGVLNVLTGFGSEAGAPLASHPGVDKIAFTGSFATGSKVMTAAAQLVKPVSMELGGKSPLIVFDDVDLDKAAEWALFGCF-WTNGQICSATSRLLVHESIA 307          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: ALDH_RHORT (Aldehyde dehydrogenase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=Rru_A0931 PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.523e-18
Identity = 57/158 (36.08%), Postives = 83/158 (52.53%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIRVVEGAVAETSALL--DQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGIN------LKVACRRMIMGKWGCNNGQACISPDHII 631
            EP GVV  I PWN+P L++   +  A+AAGN +VLKP+E  P S  +L +L+ + +    + VV G   E    L   ++  KI +TG +   R++M  A+++L PV LELGGKSP VF   I          A    +M  +  N G+ C  P   +
Sbjct:  153 EPLGVVGQIIPWNFPILMATWKLAPALAAGNCIVLKPAEQTPISILVLTELIADLLPPGVLNVVNGFGLEAGKPLASSKRIAKIAFTGETATGRLIMQYASQNLIPVTLELGGKSPNVFFDDIASADDSFFDKAVEGFVM--FALNQGEICTCPSRAL 308          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BADH_SPIOL (Betaine aldehyde dehydrogenase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.295e-18
Identity = 58/177 (32.77%), Postives = 93/177 (52.54%), Query Frame = 2
Query:  128 EKAKTSITTFPSSAEIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALL--DQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTKDFA 649
            +KA  ++      + ++ +P GVV +ISPWNYP L++   +  A+AAG   VLKPSE+A  +     ++  E  +    + ++ G   +  A L      DKI +TG+S     VMA+AA+ + PV LELGGKSP+V    +++       I G +   NGQ C +   ++  +  A
Sbjct:  129 QKAPVTLPMERFKSHVLRQPLGVVGLISPWNYPLLMATWKIAPALAAGCTAVLKPSELASVTCLEFGEVCNEVGLPPGVLNILTGLGPDAGAPLVSHPDVDKIAFTGSSATGSKVMASAAQLVKPVTLELGGKSPIVVFEDVDIDKVVEWTIFGCF-WTNGQICSATSRLLVHESIA 304          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: AL9A1_RAT (4-trimethylaminobutyraldehyde dehydrogenase OS=Rattus norvegicus GN=Aldh9a1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.295e-18
Identity = 57/159 (35.85%), Postives = 85/159 (53.46%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSI-RVVEGAVAETSALLDQKWD--KICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTKDFA 649
            EP GV L I  WNYPF ++      A+A GNA++ KPS   P S+ LLA++  +    + +  VV+G  A T   L Q  D  K+ +TG+      +M  AAK + P+ LELGGKSP++  S  N+K A +  ++  +    GQ C +   +   K+ A
Sbjct:  145 EPLGVCLGIGAWNYPFQIACWKSAPALACGNAMIFKPSPFTPVSALLLAEIYTKAGAPNGLFNVVQGGAA-TGQFLCQHRDVAKVSFTGSVPTGMKIMEMAAKGIKPITLELGGKSPLIIFSDCNMKNAVKGALLANF-LTQGQVCCNGTRVFVQKEIA 301          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: ALDH_VIBCH (Aldehyde dehydrogenase OS=Vibrio cholerae GN=aldA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.304e-18
Identity = 47/121 (38.84%), Postives = 73/121 (60.33%), Query Frame = 2
Query:  176 VPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIRVVEGAVAETSALL--DQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVF 532
            +PEP GVV  I PWN+P L++   +  A+AAG  +VLKP+E  P S   L +++G+ +    I VV G  +E    L   Q+ DK+ +TG++ +   ++  AA +L P  +ELGGKSP ++
Sbjct:  151 LPEPIGVVGQIIPWNFPLLMAAWKLAPALAAGCTVVLKPAEQTPVSILFLMEIIGDLIPAGVINVVNGFGSEAGNALATSQRIDKLAFTGSTEIGNHILKCAADNLIPSTIELGGKSPNIY 271          
The following BLAST results are available for this feature:
BLAST of FC869235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 382
Match NameE-valueIdentityDescription
ALDH_MYCBO1.338e-1936.25Probable aldehyde dehydrogenase OS=Mycobacterium b... [more]
BADH_ATRHO1.132e-1831.64Betaine aldehyde dehydrogenase, chloroplastic OS=A... [more]
DHA2_RALEH1.479e-1840.34Acetaldehyde dehydrogenase 2 OS=Ralstonia eutropha... [more]
BADH_AMAHP1.479e-1833.33Betaine aldehyde dehydrogenase, chloroplastic OS=A... [more]
AL221_ARATH1.932e-1827.85Aldehyde dehydrogenase 22A1 OS=Arabidopsis thalian... [more]
BADH1_ARATH2.523e-1833.33Betaine aldehyde dehydrogenase 1, chloroplastic OS... [more]
ALDH_RHORT2.523e-1836.08Aldehyde dehydrogenase OS=Rhodospirillum rubrum (s... [more]
BADH_SPIOL3.295e-1832.77Betaine aldehyde dehydrogenase, chloroplastic OS=S... [more]
AL9A1_RAT3.295e-1835.854-trimethylaminobutyraldehyde dehydrogenase OS=Rat... [more]
ALDH_VIBCH4.304e-1838.84Aldehyde dehydrogenase OS=Vibrio cholerae GN=aldA ... [more]

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Properties
Property NameValue
Genbank descriptionC31010A04EF AbioticL1 Citrus clementina cDNA clone C31010A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869235 ID=FC869235; Name=FC869235; organism=Citrus clementina; type=EST; length=716bp
GGACATCGTCGACGCTCTTCTCCAAGATCTCGATAAGCCGGAACTTGAAT
CCTCCATTTACGAGGTAGCATTGTTGAAGACTTCTATCAAGTCAGCACTC
AAGGAACTAAAACACTGGATGACACCAGAGAAGGCTAAAACTTCAATTAC
AACTTTTCCTTCATCAGCTGAAATAGTGCCAGAACCATTTGGTGTTGTAT
TAATCATCTCACCATGGAATTATCCTTTCTTGTTGTCTCTCGATCCAGTT
GTTGGGGCTATTGCAGCTGGTAACGCTCTGGTTCTAAAGCCATCTGAAGT
TGCTCCAGCATCGTCTTCATTGCTTGCAAAACTAGTTGGTGAATATATGG
ATTTGTCTTCCATAAGGGTTGTTGAAGGGGCAGTTGCTGAAACGTCTGCA
CTGCTTGATCAAAAGTGGGATAAAATATGTTATACAGGCAATTCAAGAGT
TGCACGCATTGTGATGGCTGCAGCTGCAAAGCATCTAACACCAGTTCTTT
TGGAGCTTGGAGGAAAATCTCCAGTTGTCTTTGATTCGGGCATCAATTTA
AAAGTTGCCTGTAGGCGGATGATTATGGGCAAGTGGGGTTGTAATAATGG
ACAAGCATGCATTTCTCCTGATCACATTATAACGACCAAAGATTTTGCTC
CNAAGCTGCTAGAGTCTCTGAAAAATGAATTGGAGAATTTTTACGGGAAG
AAATCATTGGAATCAA
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