FC869235

Overview
NameFC869235
Unique NameFC869235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: ROCA1_BACHD (1-pyrroline-5-carboxylate dehydrogenase 1 OS=Bacillus halodurans GN=rocA1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 47/162 (29.01%), Postives = 76/162 (46.91%), Query Frame = 2
Query:  185 PFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALL--DQKWDKICYTGNSRVA------RIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTKD 643
            P GV + ISPWN+   + +   V  I  GN +VLKP+   P  ++   +++ +  +    I  V G+ AE    L    K   I +TG+  V         V+     HL  V++E+GGK  VV D   +L +A   +++  +G  +GQ C +    +  KD
Sbjct:  171 PMGVTVTISPWNFALAIMVGTAVAPIVTGNTVVLKPASTTPVVAAKFVEVLEDAGLPKGVINYVPGSGAEVGDYLVDHPKTSLITFTGSKDVGVRLYERAAVVRPGQNHLKRVIVEMGGKDTVVVDRDADLDLAAESILVSAFGF-SGQKCSAGSRAVIHKD 331          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: LADH_METM7 (Lactaldehyde dehydrogenase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_0731 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 45/161 (27.95%), Postives = 82/161 (50.93%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVG---EYMDLS----SIRVVEGAVAETSALLDQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTKD 643
            EP GVV  I+P+N+P  L    +  AIA GN+++L PS  AP ++  L K++    + MD+     ++    G +       + K + + +TG+  +   +   A   +  V LELGG +P++     ++K+A +  +  K+  N GQ CIS   ++  ++
Sbjct:  128 EPLGVVGAITPFNFPLNLITHKIGPAIATGNSVILHPSSKAPIAAIYLTKIIEHVLKQMDIPRGVFNLATGNGDIVGDEISKNDKINMVSFTGSVEIGESISKNA--KMKKVTLELGGNNPMIVLKDSDIKLAAKSAVKSKF-LNAGQVCISVGQVLVEEE 285          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: LADH_METJA (Lactaldehyde dehydrogenase OS=Methanocaldococcus jannaschii GN=MJ1411 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 49/163 (30.06%), Postives = 79/163 (48.47%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-------MDLSSIRVVEGAVAETSALLDQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTKDFA 649
            EP G+V  I+P+N+P  LS   +  AIA GN +V  PS  AP     LAK++          + + ++    G V     ++++K + I +TG+S+V  ++   A      + LELGG +P +     +L  A   +I G +    GQ CIS   I+  +  A
Sbjct:  128 EPVGIVGAITPFNFPLNLSAHKIAPAIATGNVIVHHPSSKAPLVCIELAKIIENALKKYNVPLGVYNLLTGAGEVVGDEIVVNEKVNMISFTGSSKVGELITKKAG--FKKIALELGGVNPNIVLKDADLNKAVNALIKGSF-IYAGQVCISVGMILVDESIA 287          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_RHIEC (Betaine aldehyde dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=betB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 51/155 (32.90%), Postives = 78/155 (50.32%), Query Frame = 2
Query:  185 PFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQKWD--KICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTK 640
            P GV + I  WNYP  ++      A+ +GNA+V KPSE  P  +  +A+++ E  +      V++G   +T  LL    D  K+  TG+    R V AAAA  L  V +ELGGKSP++     +L  A    ++G +  + GQ C +   +   K
Sbjct:  142 PLGVCVGIGAWNYPQQIACWKGAPALISGNAMVFKPSENTPLGALKIAEILHEAGLPKGLFNVIQGD-RDTGPLLVNHPDVAKVSLTGSVPTGRRVAAAAAGSLKHVTMELGGKSPLIVFDDADLDSAVGGAMLGNF-YSTGQVCSNGTRVFVQK 294          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_PECCP (Betaine aldehyde dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=betB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 51/147 (34.69%), Postives = 73/147 (49.66%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQK--WDKICYTGNSRVARIVMA-AAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQAC 610
            EP GVV  I  WNYP  ++L     A+AAGNA++ KPSEV   ++  LA++  E  +      V+ G        L       K+ +TG     + VMA AA   L  V +ELGGKSP++     +L  A    +M  +  ++GQ C
Sbjct:  141 EPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTALKLAEVYTEAGLPAGVFNVLTGTGQSVGQALTTHPGIAKVSFTGGIASGKTVMANAAGSTLKDVTMELGGKSPLIVFEDADLDKAADIAMMANF-FSSGQVC 286          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_AGRRK (Betaine aldehyde dehydrogenase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=betB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 51/155 (32.90%), Postives = 78/155 (50.32%), Query Frame = 2
Query:  185 PFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQKWD--KICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTK 640
            P GV + I  WNYP  ++      A+ AGNA+V KPSE  P  +  +A+++ E  +      V++G   ET  LL    D  K+  TG+    R V AAAA  L  V +ELGGKSP++     ++  A    ++G +  + GQ C +   +   +
Sbjct:  142 PLGVCVGIGAWNYPQQIACWKGAPALVAGNAMVFKPSENTPLGALKIAEILIEAGLPKGLYNVIQGD-RETGPLLINHPDVAKVSLTGSVPTGRKVAAAAAGSLKHVTMELGGKSPLIVFDDADIDSAIGGAMLGNF-YSTGQVCSNGTRVFVNR 294          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: ASTD_SHEWM (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=astD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 57/206 (27.67%), Postives = 99/206 (48.06%), Query Frame = 2
Query:    2 DIVDALLQDLDKPELESSIYEVALLKTSIKSALKELKHWMTPEKAKTSITTFPSSAEIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLD-QKWDKICYTGNSRVARIVMAAAAKHLTPVL-LELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQAC 610
            ++ + + Q+  KP+ E++    A++     S     K   + E       T    A +  +P GVV +  P+N+P  L    +V A+ AGN +V KPSE+ P  + L+ KL  +  +    I +V+G V    AL   ++ D + +TG+SR   I+    A     +L LE+GG +P++     + K A   +I   +  ++GQ C
Sbjct:   78 EMAEVIAQETGKPQWETATEAGAMIGKIGLSVAAYNKRTGSSEN-----DTPAGRAVLRHKPHGVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPKVAELMLKLWEKAGLPAGVINLVQGEVETGKALASHEQIDGLFFTGSSRTGHILHQQYAGEPGKILALEMGGNNPLIIKGVKDTKAAVHDIIQSAY-ISSGQRC 277          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: ALDH2_HORSE (Aldehyde dehydrogenase, mitochondrial OS=Equus caballus GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 48/147 (32.65%), Postives = 74/147 (50.34%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVE--GAVAETSALLDQKWDKICYTGNSRVARIVMAAAAK-HLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQAC 610
            EP GV   I PWN+P L+    +  A+A GN +V+K +E  P ++  +A L  E       + VV   G  A  +    +  DK+ +TG++ V  ++  AA + +L  V LELGGKSP +  S  ++  A  +     +  N GQ C
Sbjct:  157 EPVGVCGQIIPWNFPLLMQAAKLGPALATGNVVVMKVAEQTPLTALYVANLTKEAGFPPGVVNVVPGFGPTAGAAIASHEDVDKVAFTGSTEVGHLIQVAAGRSNLKKVTLELGGKSPNIIVSDADMDWAVEQAHFALF-FNQGQCC 302          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: ABDH_SALTI (Gamma-aminobutyraldehyde dehydrogenase OS=Salmonella typhi GN=ydcW PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 48/146 (32.88%), Postives = 73/146 (50.00%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIRVVEGAVAETSALL--DQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPV-VFDSGINLKVACRRMIMGKWGCNNGQAC 610
            +P GVV  I+PWNYP +++   +  A+AAGN +V+KPSE+ P ++  LA L  +      + V+ G       +L   +K   +  TG+      ++   A  +    +ELGGK+PV VFD      VA      G +  N GQ C
Sbjct:  137 DPIGVVASIAPWNYPLMMAAWKLAPALAAGNCVVIKPSEITPLTALKLAALAKDIFPPGVLNVLFGRGQTVGDVLTGHEKVRMVSLTGSIATGEHILRHTAPAIKRTHMELGGKAPVIVFDDADLDAVAQGVRTFGFY--NAGQDC 280          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: ABDH_SALPB (Gamma-aminobutyraldehyde dehydrogenase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ydcW PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 48/146 (32.88%), Postives = 73/146 (50.00%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIRVVEGAVAETSALL--DQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPV-VFDSGINLKVACRRMIMGKWGCNNGQAC 610
            +P GVV  I+PWNYP +++   +  A+AAGN +V+KPSE+ P ++  LA L  +      + V+ G       +L   +K   +  TG+      ++   A  +    +ELGGK+PV VFD      VA      G +  N GQ C
Sbjct:  137 DPIGVVASIAPWNYPLMMAAWKLAPALAAGNCVVIKPSEITPLTALKLAALAKDIFPPGVLNVLFGRGQTVGDVLTGHEKVRMVSLTGSIATGEHILRHTAPAIKRTHMELGGKAPVIVFDDADLDAVAQGVRTFGFY--NAGQDC 280          
The following BLAST results are available for this feature:
BLAST of FC869235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 382
Match NameE-valueIdentityDescription
ROCA1_BACHD1.027e-1129.011-pyrroline-5-carboxylate dehydrogenase 1 OS=Bacil... [more]
LADH_METM71.027e-1127.95Lactaldehyde dehydrogenase OS=Methanococcus maripa... [more]
LADH_METJA1.027e-1130.06Lactaldehyde dehydrogenase OS=Methanocaldococcus j... [more]
BETB_RHIEC1.027e-1132.90Betaine aldehyde dehydrogenase OS=Rhizobium etli (... [more]
BETB_PECCP1.027e-1134.69Betaine aldehyde dehydrogenase OS=Pectobacterium c... [more]
BETB_AGRRK1.027e-1132.90Betaine aldehyde dehydrogenase OS=Agrobacterium ra... [more]
ASTD_SHEWM1.027e-1127.67N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ALDH2_HORSE1.027e-1132.65Aldehyde dehydrogenase, mitochondrial OS=Equus cab... [more]
ABDH_SALTI1.027e-1132.88Gamma-aminobutyraldehyde dehydrogenase OS=Salmonel... [more]
ABDH_SALPB1.027e-1132.88Gamma-aminobutyraldehyde dehydrogenase OS=Salmonel... [more]

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Properties
Property NameValue
Genbank descriptionC31010A04EF AbioticL1 Citrus clementina cDNA clone C31010A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869235 ID=FC869235; Name=FC869235; organism=Citrus clementina; type=EST; length=716bp
GGACATCGTCGACGCTCTTCTCCAAGATCTCGATAAGCCGGAACTTGAAT
CCTCCATTTACGAGGTAGCATTGTTGAAGACTTCTATCAAGTCAGCACTC
AAGGAACTAAAACACTGGATGACACCAGAGAAGGCTAAAACTTCAATTAC
AACTTTTCCTTCATCAGCTGAAATAGTGCCAGAACCATTTGGTGTTGTAT
TAATCATCTCACCATGGAATTATCCTTTCTTGTTGTCTCTCGATCCAGTT
GTTGGGGCTATTGCAGCTGGTAACGCTCTGGTTCTAAAGCCATCTGAAGT
TGCTCCAGCATCGTCTTCATTGCTTGCAAAACTAGTTGGTGAATATATGG
ATTTGTCTTCCATAAGGGTTGTTGAAGGGGCAGTTGCTGAAACGTCTGCA
CTGCTTGATCAAAAGTGGGATAAAATATGTTATACAGGCAATTCAAGAGT
TGCACGCATTGTGATGGCTGCAGCTGCAAAGCATCTAACACCAGTTCTTT
TGGAGCTTGGAGGAAAATCTCCAGTTGTCTTTGATTCGGGCATCAATTTA
AAAGTTGCCTGTAGGCGGATGATTATGGGCAAGTGGGGTTGTAATAATGG
ACAAGCATGCATTTCTCCTGATCACATTATAACGACCAAAGATTTTGCTC
CNAAGCTGCTAGAGTCTCTGAAAAATGAATTGGAGAATTTTTACGGGAAG
AAATCATTGGAATCAA
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