FC869235

Overview
NameFC869235
Unique NameFC869235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: ABDH_SALPA (Gamma-aminobutyraldehyde dehydrogenase OS=Salmonella paratyphi A GN=ydcW PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 48/146 (32.88%), Postives = 73/146 (50.00%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIRVVEGAVAETSALL--DQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPV-VFDSGINLKVACRRMIMGKWGCNNGQAC 610
            +P GVV  I+PWNYP +++   +  A+AAGN +V+KPSE+ P ++  LA L  +      + V+ G       +L   +K   +  TG+      ++   A  +    +ELGGK+PV VFD      VA      G +  N GQ C
Sbjct:  137 DPIGVVASIAPWNYPLMMAAWKLAPALAAGNCVVIKPSEITPLTALKLAALAKDIFPPGVLNVLFGRGQTVGDVLTGHEKVRMVSLTGSIATGEHILRHTAPAIKRTHMELGGKAPVIVFDDADLDAVAQGVRTFGFY--NAGQDC 280          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: ROCA_BACP2 (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus pumilus (strain SAFR-032) GN=rocA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 48/156 (30.77%), Postives = 73/156 (46.79%), Query Frame = 2
Query:  170 EIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPA-SSSLLAKLVGEYMDLSSIRVVEGAVAETSALL--DQKWDKICYTGNSRVARIVMAAAAK------HLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQAC 610
            + V  P GV L+I PWN+ F +     V  I  GN +VLKP+   P  ++  + +L    +    +  V G+ AE    L    K   I +TG+  V   +   AAK      HL  V+ E+GGK  VV D   ++++A   +    +G  +GQ C
Sbjct:  166 QYVYTPTGVTLVIPPWNFLFAIMAGTTVAPIVTGNTVVLKPASATPVIAARFVEELEQAGLPKGVVNFVPGSGAEVGDYLVDHPKTSLITFTGSREVGTRIFERAAKVQPGQQHLKRVIAEMGGKDTVVVDEDADVELAANAIFTSAFGF-SGQKC 320          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: ROCA2_BACSU (1-pyrroline-5-carboxylate dehydrogenase 2 OS=Bacillus subtilis GN=ycgN PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 47/156 (30.13%), Postives = 74/156 (47.44%), Query Frame = 2
Query:  170 EIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALL--DQKWDKICYTGNSRVARIVMAAAAK------HLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQAC 610
            + V  P GV ++I PWN+ F +     V  I  GN +VLKP+   P  ++   +++ E  +    +  V G+ AE    L    K   I +TG+  V   +   AAK      HL  V+ E+GGK  VV D   ++++A + +    +G   GQ C
Sbjct:  166 QYVYTPTGVTVVIPPWNFLFAIMAGTTVAPIVTGNTVVLKPASATPVIAAKFVEVLEESGLPKGVVNFVPGSGAEVGDYLVDHPKTSLITFTGSREVGTRIFERAAKVQPGQQHLKRVIAEMGGKDTVVVDEDADIELAAQSIFTSAFGF-AGQKC 320          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: GABD1_MYCTU (Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=Mycobacterium tuberculosis GN=gabD1 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 48/158 (30.38%), Postives = 75/158 (47.47%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLV--GEYMD--LSSIRVVEGAVAETSALLDQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTKD 643
            +P GV+L + PWN+P   ++     A+ AGN  +LK +   P  +  LA ++  G + D    ++ V  GAV   + L D +      TG+    + V A A   + P +LELGG  P +     +L  A    + G+   NNGQ+CI+    I   D
Sbjct:  122 QPLGVILAVMPWNFPLWQAVRFAAPALMAGNVGLLKHASNVPQCALYLADVIARGGFPDGCFQTLLVSSGAV--EAILRDPRVAAATLTGSEPAGQSVGAIAGNEIKPTVLELGGSDPFIVMPSADLDAAVSTAVTGRVQ-NNGQSCIAAKRFIVHAD 276          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: GABD1_MYCTA (Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=gabD1 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 48/158 (30.38%), Postives = 75/158 (47.47%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLV--GEYMD--LSSIRVVEGAVAETSALLDQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTKD 643
            +P GV+L + PWN+P   ++     A+ AGN  +LK +   P  +  LA ++  G + D    ++ V  GAV   + L D +      TG+    + V A A   + P +LELGG  P +     +L  A    + G+   NNGQ+CI+    I   D
Sbjct:  122 QPLGVILAVMPWNFPLWQAVRFAAPALMAGNVGLLKHASNVPQCALYLADVIARGGFPDGCFQTLLVSSGAV--EAILRDPRVAAATLTGSEPAGQSVGAIAGNEIKPTVLELGGSDPFIVMPSADLDAAVSTAVTGRVQ-NNGQSCIAAKRFIVHAD 276          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: GABD1_MYCBP (Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=gabD1 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 48/158 (30.38%), Postives = 75/158 (47.47%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLV--GEYMD--LSSIRVVEGAVAETSALLDQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTKD 643
            +P GV+L + PWN+P   ++     A+ AGN  +LK +   P  +  LA ++  G + D    ++ V  GAV   + L D +      TG+    + V A A   + P +LELGG  P +     +L  A    + G+   NNGQ+CI+    I   D
Sbjct:  122 QPLGVILAVMPWNFPLWQAVRFAAPALMAGNVGLLKHASNVPQCALYLADVIARGGFPDGCFQTLLVSSGAV--EAILRDPRVAAATLTGSEPAGQSVGAIAGNEIKPTVLELGGSDPFIVMPSADLDAAVSTAVTGRVQ-NNGQSCIAAKRFIVHAD 276          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: GABD1_MYCBO (Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=Mycobacterium bovis GN=gabD1 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 48/158 (30.38%), Postives = 75/158 (47.47%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLV--GEYMD--LSSIRVVEGAVAETSALLDQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTKD 643
            +P GV+L + PWN+P   ++     A+ AGN  +LK +   P  +  LA ++  G + D    ++ V  GAV   + L D +      TG+    + V A A   + P +LELGG  P +     +L  A    + G+   NNGQ+CI+    I   D
Sbjct:  122 QPLGVILAVMPWNFPLWQAVRFAAPALMAGNVGLLKHASNVPQCALYLADVIARGGFPDGCFQTLLVSSGAV--EAILRDPRVAAATLTGSEPAGQSVGAIAGNEIKPTVLELGGSDPFIVMPSADLDAAVSTAVTGRVQ-NNGQSCIAAKRFIVHAD 276          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: ALDH1_BACSU (Probable aldehyde dehydrogenase ycbD OS=Bacillus subtilis GN=ycbD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 44/152 (28.95%), Postives = 77/152 (50.66%), Query Frame = 2
Query:  185 PFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKP-SEVAPASSSLLAKLVGEYMDLSSIRVV--EGAVAETSALLDQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHII 631
            P GVV +ISPWN+P  + +  +  A+  GN +V+KP +E A   + ++A      +    I +V   G+V           + + +TG+++V +I+  AA        LE+GGK+PV+     +L+ A   +I G +  + GQ C +   +I
Sbjct:  146 PLGVVGVISPWNFPVAIPIWKMAPALVYGNTVVIKPATETAVTCAKIIACFEEAGLPAGVINLVTGPGSVVGQGLAEHDGVNAVTFTGSNQVGKIIGQAALARGAKYQLEMGGKNPVIVADDADLEAAAEAVITGAFR-STGQKCTATSRVI 296          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: AL8A1_HUMAN (Aldehyde dehydrogenase family 8 member A1 OS=Homo sapiens GN=ALDH8A1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 56/221 (25.34%), Postives = 97/221 (43.89%), Query Frame = 2
Query:    2 DIVDALLQDLDKPELESSIYEVALLKT-SIKSALKELKHWMTPEKAKTSITT----FPSSAEIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALL--DQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTK 640
            D+++  L++  + E +     +AL +T  I  +++  + + +     TS  T           V  P GV  +ISPWN P  L    +  A+AAGN ++ KPSE+   ++ +L KL+ +  +    + +V G        L    +   I +TG+   A  +   +A H   + LELGGK+P +     NL       +   +  N G+ C+    I   K
Sbjct:   78 DLLEQSLEEFAQAESKDQGKTLALARTMDIPRSVQNFRFFASSSLHHTSECTQMDHLGCMHYTVRAPVGVAGLISPWNLPLYLLTWKIAPAMAAGNTVIAKPSELTSVTAWMLCKLLDKAGVPPGVVNIVFGTGPRVGEALVSHPEVPLISFTGSQPTAERITQLSAPHCKKLSLELGGKNPAIIFEDANLDECIPATVRSSF-ANQGEICLCTSRIFVQK 297          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: ABDH_SALTY (Gamma-aminobutyraldehyde dehydrogenase OS=Salmonella typhimurium GN=ydcW PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 48/146 (32.88%), Postives = 73/146 (50.00%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIRVVEGAVAETSALL--DQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPV-VFDSGINLKVACRRMIMGKWGCNNGQAC 610
            +P GVV  I+PWNYP +++   +  A+AAGN +V+KPSE+ P ++  LA L  +      + V+ G       +L   +K   +  TG+      ++   A  +    +ELGGK+PV VFD      VA      G +  N GQ C
Sbjct:  137 DPIGVVASIAPWNYPLMMAAWKLAPALAAGNCVVIKPSEITPLTALKLAVLAKDIFPPGVLNVLFGRGQTVGDVLTGHEKVRMVSLTGSIATGEHILRHTAPAIKRTHMELGGKAPVIVFDDADLDAVAQGVRTFGFY--NAGQDC 280          
The following BLAST results are available for this feature:
BLAST of FC869235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 382
Match NameE-valueIdentityDescription
ABDH_SALPA1.027e-1132.88Gamma-aminobutyraldehyde dehydrogenase OS=Salmonel... [more]
ROCA_BACP21.341e-1130.771-pyrroline-5-carboxylate dehydrogenase OS=Bacillu... [more]
ROCA2_BACSU1.341e-1130.131-pyrroline-5-carboxylate dehydrogenase 2 OS=Bacil... [more]
GABD1_MYCTU1.341e-1130.38Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=... [more]
GABD1_MYCTA1.341e-1130.38Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=... [more]
GABD1_MYCBP1.341e-1130.38Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=... [more]
GABD1_MYCBO1.341e-1130.38Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=... [more]
ALDH1_BACSU1.341e-1128.95Probable aldehyde dehydrogenase ycbD OS=Bacillus s... [more]
AL8A1_HUMAN1.341e-1125.34Aldehyde dehydrogenase family 8 member A1 OS=Homo ... [more]
ABDH_SALTY1.341e-1132.88Gamma-aminobutyraldehyde dehydrogenase OS=Salmonel... [more]

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Properties
Property NameValue
Genbank descriptionC31010A04EF AbioticL1 Citrus clementina cDNA clone C31010A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869235 ID=FC869235; Name=FC869235; organism=Citrus clementina; type=EST; length=716bp
GGACATCGTCGACGCTCTTCTCCAAGATCTCGATAAGCCGGAACTTGAAT
CCTCCATTTACGAGGTAGCATTGTTGAAGACTTCTATCAAGTCAGCACTC
AAGGAACTAAAACACTGGATGACACCAGAGAAGGCTAAAACTTCAATTAC
AACTTTTCCTTCATCAGCTGAAATAGTGCCAGAACCATTTGGTGTTGTAT
TAATCATCTCACCATGGAATTATCCTTTCTTGTTGTCTCTCGATCCAGTT
GTTGGGGCTATTGCAGCTGGTAACGCTCTGGTTCTAAAGCCATCTGAAGT
TGCTCCAGCATCGTCTTCATTGCTTGCAAAACTAGTTGGTGAATATATGG
ATTTGTCTTCCATAAGGGTTGTTGAAGGGGCAGTTGCTGAAACGTCTGCA
CTGCTTGATCAAAAGTGGGATAAAATATGTTATACAGGCAATTCAAGAGT
TGCACGCATTGTGATGGCTGCAGCTGCAAAGCATCTAACACCAGTTCTTT
TGGAGCTTGGAGGAAAATCTCCAGTTGTCTTTGATTCGGGCATCAATTTA
AAAGTTGCCTGTAGGCGGATGATTATGGGCAAGTGGGGTTGTAATAATGG
ACAAGCATGCATTTCTCCTGATCACATTATAACGACCAAAGATTTTGCTC
CNAAGCTGCTAGAGTCTCTGAAAAATGAATTGGAGAATTTTTACGGGAAG
AAATCATTGGAATCAA
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