FC869235

Overview
NameFC869235
Unique NameFC869235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: AL1B1_PONAB (Aldehyde dehydrogenase X, mitochondrial OS=Pongo abelii GN=ALDH1B1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 48/150 (32.00%), Postives = 75/150 (50.00%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQKW--DKICYTGNSRVARIVMAAAA-KHLTPVLLELGGKSPVVFDSGINLKVA---CRRMIMGKWGCNNGQAC 610
            EP GV   I PWN+P ++    +  A+A GN +V+K +E  P S+  LA L+ E       + ++ G      A + Q    DK+ +TG++ V  ++  AA   +L  V LELGGKSP +  +  +++ A   C   +      N GQ C
Sbjct:  174 EPIGVCGQIIPWNFPLVMQGWKLAPALATGNTVVMKVAEQTPLSALYLASLIKEAGFPPGVVNIITGYGPTAGAAIAQHMDVDKVAFTGSTEVGHLIQKAAGDSNLKRVTLELGGKSPSIVLADADMEHAVEQCHEALF----FNMGQCC 319          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: AL1B1_MOUSE (Aldehyde dehydrogenase X, mitochondrial OS=Mus musculus GN=Aldh1b1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 48/150 (32.00%), Postives = 76/150 (50.67%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQKW--DKICYTGNSRVARIVMAAAAK-HLTPVLLELGGKSPVVFDSGINLKVA---CRRMIMGKWGCNNGQAC 610
            EP GV   I PWN+P ++    +  A+A GN +V+K +E  P S+  LA L+ E       + ++ G      A + Q    DK+ +TG++ V  ++  AA + +L  V LELGGKSP +  +  +++ A   C   +      N GQ C
Sbjct:  176 EPVGVCGQIIPWNFPLVMQGWKLAPALATGNTVVMKVAEQTPLSALYLASLIKEAGFPPGVVNIITGYGPTAGAAIAQHMDVDKVAFTGSTEVGHLIQKAAGESNLKRVTLELGGKSPSIVLADADMEHAVDQCHEALF----FNMGQCC 321          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: ABDH_SHIDS (Gamma-aminobutyraldehyde dehydrogenase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ydcW PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 47/156 (30.13%), Postives = 75/156 (48.08%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIRVVEGAVAETSALL--DQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRM-IMGKWGCNNGQACISPDHIITTK 640
            +P GVV  I+PWNY  +++   +  A+AAGN +VLKPSE+ P ++  LA+L  +      I V+ G        L    K   +  TG+      +++  A  +    +ELGGK+PV+     N++     +   G +  N GQ C +   I   K
Sbjct:  137 DPLGVVASIAPWNYLLMMAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAKDIFPAGVINVLFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTAPSIKRTHMELGGKAPVIVFDDANIEAVVEGVRTFGYY--NAGQDCTAACRIYAQK 290          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: ABDH_SALAR (Gamma-aminobutyraldehyde dehydrogenase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=ydcW PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 39/118 (33.05%), Postives = 62/118 (52.54%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIRVVEGAVAETSALL--DQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVV 529
            +P GVV  I+PWNYP +++   +  A+AAGN +V+KPSE+ P ++  LA L  +      I V+ G        L   +K   +  TG+      ++   A  +    +ELGGK+PV+
Sbjct:  137 DPVGVVASIAPWNYPLMMAAWKLAPALAAGNCVVIKPSEITPLTALKLAALAKDIFPPGVINVLFGRGQTVGDALTGHEKVRMVSLTGSIATGEHILRHTAPAIKRTHMELGGKAPVI 254          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB1_RHIME (Betaine aldehyde dehydrogenase 1 OS=Rhizobium meliloti GN=betB1 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 50/145 (34.48%), Postives = 75/145 (51.72%), Query Frame = 2
Query:  185 PFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQKWD--KICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQAC 610
            P GV + I  WNYP  ++      A+ AGNA+V KPSE  P  +  +A+++ E  +      V++G  A T  LL    D  K+  TG+    + V  AAA  L  V +ELGGKSP++     +L+ A    ++G +  + GQ C
Sbjct:  142 PLGVCVGIGAWNYPQQIACWKGAPALVAGNAMVFKPSENTPLGALKIAEILIEAGLPKGLFNVIQGDRA-TGPLLVNHPDVAKVSLTGSVPTGKKVAGAAAAELKHVTMELGGKSPLIVFDDADLESAIGGAMLGNF-YSTGQVC 284          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: AL8A1_MOUSE (Aldehyde dehydrogenase family 8 member A1 OS=Mus musculus GN=Aldh8a1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 45/158 (28.48%), Postives = 72/158 (45.57%), Query Frame = 2
Query:  176 VPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALL--DQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTK 640
            V  P G+  +ISPWN P  L    +  AIAAGN ++ KPSE+   ++ +  KL+ +  +    I +V G        L    +   I +TG+   A  +   +A H   + LELGGK+P +     NL+      +   +  N G+ C+    I   +
Sbjct:  141 VRTPVGIAGLISPWNLPLYLLTWKIAPAIAAGNTVIAKPSEMTSVTAWMFCKLLDKAGVPPGVINIVFGTGPRVGEALVSHPEVPLISFTGSQPTAERITQLSAPHCKKLSLELGGKNPAIIFEDANLEECIPATVRSSF-ANQGEICLCTSRIFVQR 297          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: AL1B1_HUMAN (Aldehyde dehydrogenase X, mitochondrial OS=Homo sapiens GN=ALDH1B1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 48/150 (32.00%), Postives = 75/150 (50.00%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQKW--DKICYTGNSRVARIVMAAAA-KHLTPVLLELGGKSPVVFDSGINLKVA---CRRMIMGKWGCNNGQAC 610
            EP GV   I PWN+P ++    +  A+A GN +V+K +E  P S+  LA L+ E       + ++ G      A + Q    DK+ +TG++ V  ++  AA   +L  V LELGGKSP +  +  +++ A   C   +      N GQ C
Sbjct:  174 EPVGVCGQIIPWNFPLVMQGWKLAPALATGNTVVMKVAEQTPLSALYLASLIKEAGFPPGVVNIITGYGPTAGAAIAQHMDVDKVAFTGSTEVGHLIQKAAGDSNLKRVTLELGGKSPSIVLADADMEHAVEQCHEALF----FNMGQCC 319          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: ROCA_BACC1 (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus cereus (strain ATCC 10987) GN=rocA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 46/162 (28.40%), Postives = 82/162 (50.62%), Query Frame = 2
Query:  185 PFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAET-SALLDQKWDK-ICYTGNSRVARIVMAAAAK------HLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTKD 643
            P GV +IISPWN+PF +       A+ +GN ++LKP+   P  ++   +++ E  +    +  V G+ +E    L+D    + I +TG+  V   +   AAK       L  V+ E+GGK  +V D   +L++A + ++   +G  +GQ C +    +  +D
Sbjct:  171 PLGVGVIISPWNFPFAIMAGMTTAALVSGNTVLLKPASTTPVVAAKFMEVLEEAGLPAGVVNFVPGSGSEVGDYLVDHPRTRFISFTGSRDVGIRIYERAAKVNPGQIWLKRVIAEMGGKDTIVVDKEADLELAAKSIVASAFGF-SGQKCSACSRAVIHED 331          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: ASTD1_PSEHT (N-succinylglutamate 5-semialdehyde dehydrogenase 1 OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=astD1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 49/151 (32.45%), Postives = 77/151 (50.99%), Query Frame = 2
Query:  167 AEIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQKW-DKICYTGNSRVARIVMAAAAKHLTPVL-LELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQAC 610
            A I  +P GVV +  P+N+P  L    +V A+ AGN ++ KPSE+ P  + L  KL  +  +    I +V+G VA   AL   K  D + +TG+SR   I+    A     +L LE+GG +P++     + K     +I   +  ++GQ C
Sbjct:  131 AMIRHKPHGVVAVFGPYNFPGHLPNGHIVPALLAGNTVIFKPSELTPKVAELTLKLWEKAGLPAGVINLVQGEVATGKALAAHKGIDGLFFTGSSRTGHILHEQFAGQPGKILALEMGGNNPLIITDVEDTKAVVHDIIQSAF-ISSGQRC 280          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: AL1B1_RAT (Aldehyde dehydrogenase X, mitochondrial OS=Rattus norvegicus GN=Aldh1b1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 50/150 (33.33%), Postives = 76/150 (50.67%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQKW--DKICYTGNSRVARIVMAAAA-KHLTPVLLELGGKSP--VVFDSGINLKV-ACRRMIMGKWGCNNGQAC 610
            EP GV   I PWN+P ++    +  A+A GN +V+K +E  P S+  LA L+ E       + ++ G      A + Q    DK+ +TG++ V  ++  AA   +L  V LELGGKSP  V+ D+ ++  V  C   +      N GQ C
Sbjct:  176 EPVGVCGQIIPWNFPLVMQGWKLAPALATGNTVVMKVAEQTPLSALYLASLIKEAGFPPGVVNIITGYGPTAGAAIAQHMDVDKVAFTGSTEVGHLIQKAAGDSNLKRVTLELGGKSPSIVLADADMDHAVDQCHEALF----FNMGQCC 321          
The following BLAST results are available for this feature:
BLAST of FC869235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 382
Match NameE-valueIdentityDescription
AL1B1_PONAB2.287e-1132.00Aldehyde dehydrogenase X, mitochondrial OS=Pongo a... [more]
AL1B1_MOUSE2.287e-1132.00Aldehyde dehydrogenase X, mitochondrial OS=Mus mus... [more]
ABDH_SHIDS2.287e-1130.13Gamma-aminobutyraldehyde dehydrogenase OS=Shigella... [more]
ABDH_SALAR2.287e-1133.05Gamma-aminobutyraldehyde dehydrogenase OS=Salmonel... [more]
BETB1_RHIME2.987e-1134.48Betaine aldehyde dehydrogenase 1 OS=Rhizobium meli... [more]
AL8A1_MOUSE2.987e-1128.48Aldehyde dehydrogenase family 8 member A1 OS=Mus m... [more]
AL1B1_HUMAN2.987e-1132.00Aldehyde dehydrogenase X, mitochondrial OS=Homo sa... [more]
ROCA_BACC13.901e-1128.401-pyrroline-5-carboxylate dehydrogenase OS=Bacillu... [more]
ASTD1_PSEHT3.901e-1132.45N-succinylglutamate 5-semialdehyde dehydrogenase 1... [more]
AL1B1_RAT3.901e-1133.33Aldehyde dehydrogenase X, mitochondrial OS=Rattus ... [more]

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Properties
Property NameValue
Genbank descriptionC31010A04EF AbioticL1 Citrus clementina cDNA clone C31010A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869235 ID=FC869235; Name=FC869235; organism=Citrus clementina; type=EST; length=716bp
GGACATCGTCGACGCTCTTCTCCAAGATCTCGATAAGCCGGAACTTGAAT
CCTCCATTTACGAGGTAGCATTGTTGAAGACTTCTATCAAGTCAGCACTC
AAGGAACTAAAACACTGGATGACACCAGAGAAGGCTAAAACTTCAATTAC
AACTTTTCCTTCATCAGCTGAAATAGTGCCAGAACCATTTGGTGTTGTAT
TAATCATCTCACCATGGAATTATCCTTTCTTGTTGTCTCTCGATCCAGTT
GTTGGGGCTATTGCAGCTGGTAACGCTCTGGTTCTAAAGCCATCTGAAGT
TGCTCCAGCATCGTCTTCATTGCTTGCAAAACTAGTTGGTGAATATATGG
ATTTGTCTTCCATAAGGGTTGTTGAAGGGGCAGTTGCTGAAACGTCTGCA
CTGCTTGATCAAAAGTGGGATAAAATATGTTATACAGGCAATTCAAGAGT
TGCACGCATTGTGATGGCTGCAGCTGCAAAGCATCTAACACCAGTTCTTT
TGGAGCTTGGAGGAAAATCTCCAGTTGTCTTTGATTCGGGCATCAATTTA
AAAGTTGCCTGTAGGCGGATGATTATGGGCAAGTGGGGTTGTAATAATGG
ACAAGCATGCATTTCTCCTGATCACATTATAACGACCAAAGATTTTGCTC
CNAAGCTGCTAGAGTCTCTGAAAAATGAATTGGAGAATTTTTACGGGAAG
AAATCATTGGAATCAA
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