FC869235

Overview
NameFC869235
Unique NameFC869235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: ASTD_CAUSK (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Caulobacter sp. (strain K31) GN=astD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 50/156 (32.05%), Postives = 79/156 (50.64%), Query Frame = 2
Query:  191 GVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQKWDKICYTGNSRVARIVMAAAAKHLTPVL-LELGGKSP-VVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTKDFA 649
            GV+ ++ P+N+P  L    +V A+ AG+ +V KPSE  P +  LL + + E  +    I +V+G      AL+DQ+ D + +TG++          A     +L LELGG +P VV+D+G    VA   +I+       GQ C     +I + D A
Sbjct:  138 GVMAVLGPFNFPGHLPNGHIVPALLAGDTVVFKPSEETPLAGQLLVEALEEAGVPAGVINLVQGGREVGQALIDQEIDGLLFTGSAAAGAFFRRHFADRPDVILALELGGNNPLVVWDAGDPEAVAA--LIVQSAFITTGQRCSCARRLIVSDDAA 291          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: ABDH_CITK8 (Gamma-aminobutyraldehyde dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=CKO_01478 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 40/121 (33.06%), Postives = 64/121 (52.89%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSIRVVEGAVAETSALL--DQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPV-VFD 535
            +P GVV  I+PWNYP +++   +  A+AAGN +V+KPSE+ P ++  LA+   +      + V+ G        L   +K   +  TG+      ++   A  +    +ELGGK+PV VFD
Sbjct:  137 DPVGVVASIAPWNYPLMMAAWKLAPALAAGNCVVIKPSEITPLTALKLAEFAKDIFPPGVLNVLFGRGKTVGDPLTGHEKVRMVSLTGSIATGEHIIQHTAPSIKRTHMELGGKAPVIVFD 257          
The following BLAST results are available for this feature:
BLAST of FC869235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 382
Match NameE-valueIdentityDescription
ASTD_CAUSK8.691e-1132.05N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ABDH_CITK88.691e-1133.06Gamma-aminobutyraldehyde dehydrogenase OS=Citrobac... [more]

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Properties
Property NameValue
Genbank descriptionC31010A04EF AbioticL1 Citrus clementina cDNA clone C31010A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869235 ID=FC869235; Name=FC869235; organism=Citrus clementina; type=EST; length=716bp
GGACATCGTCGACGCTCTTCTCCAAGATCTCGATAAGCCGGAACTTGAAT
CCTCCATTTACGAGGTAGCATTGTTGAAGACTTCTATCAAGTCAGCACTC
AAGGAACTAAAACACTGGATGACACCAGAGAAGGCTAAAACTTCAATTAC
AACTTTTCCTTCATCAGCTGAAATAGTGCCAGAACCATTTGGTGTTGTAT
TAATCATCTCACCATGGAATTATCCTTTCTTGTTGTCTCTCGATCCAGTT
GTTGGGGCTATTGCAGCTGGTAACGCTCTGGTTCTAAAGCCATCTGAAGT
TGCTCCAGCATCGTCTTCATTGCTTGCAAAACTAGTTGGTGAATATATGG
ATTTGTCTTCCATAAGGGTTGTTGAAGGGGCAGTTGCTGAAACGTCTGCA
CTGCTTGATCAAAAGTGGGATAAAATATGTTATACAGGCAATTCAAGAGT
TGCACGCATTGTGATGGCTGCAGCTGCAAAGCATCTAACACCAGTTCTTT
TGGAGCTTGGAGGAAAATCTCCAGTTGTCTTTGATTCGGGCATCAATTTA
AAAGTTGCCTGTAGGCGGATGATTATGGGCAAGTGGGGTTGTAATAATGG
ACAAGCATGCATTTCTCCTGATCACATTATAACGACCAAAGATTTTGCTC
CNAAGCTGCTAGAGTCTCTGAAAAATGAATTGGAGAATTTTTACGGGAAG
AAATCATTGGAATCAA
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