FC869235

Overview
NameFC869235
Unique NameFC869235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15306 contig Ccv1_Contig15306:265..980. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: A9A1B_DANRE (Aldehyde dehydrogenase family 9 member A1-B OS=Danio rerio GN=aldh9a1b PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.261e-16
Identity = 53/160 (33.12%), Postives = 85/160 (53.12%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSSI-RVVEGAVAETSAL--LDQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTKDFAP 652
            EPFGV + I  WNYPF ++      AIA GN++V KPS + P ++ LLA++  +      +  VV+G   ET +L  L    +K+ +TG+    + +M  A++ +  V LELGGKSP++     +L+ A R  +M  +  + GQ C +   +       P
Sbjct:  169 EPFGVCVGIGAWNYPFQIAAWKSAPAIACGNSMVFKPSPLTPVTAVLLAEIYRQAGAPEGLFNVVQGG-QETGSLLCLHPSVEKVSFTGSVPTGKKIMEMASRGVKAVTLELGGKSPLIIFEDTDLENAVRGALMANF-LSQGQVCSNGTRVFVQSSIVP 326          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: A9A1A_DANRE (Aldehyde dehydrogenase family 9 member A1-A OS=Danio rerio GN=aldh9a1a PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.261e-16
Identity = 54/160 (33.75%), Postives = 84/160 (52.50%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALL--DQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTKDFAP 652
            EP GV + I  WNYPF ++      A+A GNA+V KPS + P ++ +LA++  E  +      VV+G  AET +LL       K+ +TG+    + VM  AAK +  V LELGGKSP++      L+ A +  +M  +    G+ C +   +   ++  P
Sbjct:  159 EPLGVCVGIGAWNYPFQIAAWKSAPALACGNAMVFKPSPMTPVTAVMLAEIYKEAGVPDGLFNVVQGG-AETGSLLCHHPMVAKVSFTGSVPTGKKVMEMAAKSVKQVTLELGGKSPLIIFKDCELENAIKGALMANF-LTQGEVCCNGTRVFVQREIMP 316          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: AL1L2_MOUSE (Probable 10-formyltetrahydrofolate dehydrogenase ALDH1L2 OS=Mus musculus GN=Aldh1l2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.871e-16
Identity = 56/149 (37.58%), Postives = 81/149 (54.36%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKL-VGEYMDLSSIRVVEGAVAETSALLDQKWD--KICYTGNSRVARIVM-AAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACIS 616
            EP G   II PWNYP ++        +AAGN LVLKP++V P ++   A+L V        I ++ G+       L Q  D  K+ +TG++ V + +M + A  +L  V LELGGKSP++  S  +L+ A  RM MG    N G+ CI+
Sbjct:  583 EPLGACAIIIPWNYPLMMLAWKSAACLAAGNTLVLKPAQVTPLTALKFAELTVKAGFPKGVINIIPGSGGVAGQRLSQHPDIRKLGFTGSTSVGKQIMKSCAVSNLKKVSLELGGKSPLIIFSDCDLEKAV-RMGMGAVFFNKGENCIA 730          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: YOSF_SCHPO (Putative aldehyde dehydrogenase-like protein C21C3 OS=Schizosaccharomyces pombe GN=SPBC21C3.15c PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.973e-16
Identity = 58/209 (27.75%), Postives = 99/209 (47.37%), Query Frame = 2
Query:   23 QDLDKPELESSIYEVALLKTSIKSALKELKHWMTPEKAKTSITTFPSSAEIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEYMDLSS-----IRVVEGAVAETSALLDQKWDK-ICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHII 631
            +D  K  ++++  E+ +    I   L   +  + P K   S+ T      +  EP GV+  +  WNYP   +L P++ A+ AGNA+V+K SE+   S+    ++V   +         ++ +         L      K I + G+  +A++V A+AAK LTP+ LELGGK P +      L+     ++ G +  + GQ CI  + II
Sbjct:   73 KDTGKTLVDAAFGEILVTLEKINWTLANGEQSLRPTKRPNSLLTSYKGGYVKYEPLGVIAALVSWNYPLHNALGPIISALFAGNAIVVKGSELTAWSTHQYCEMVRSLLQSMGHSPELVQCITCLPDVADHLTSHSGIKHITFIGSQPIAKLVAASAAKQLTPLCLELGGKDPCILTDDHRLEEILSIVMRGVFQ-SAGQNCIGIERII 280          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_BACSU (Betaine aldehyde dehydrogenase OS=Bacillus subtilis GN=gbsA PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.973e-16
Identity = 49/160 (30.63%), Postives = 89/160 (55.62%), Query Frame = 2
Query:  161 SSAEIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLV---GEYMDLSSIRVVEGAVAETSALLDQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHII 631
            S ++I+ EP GV   I+PWNYP L +   +  A+AAGN +V+KPSE+ P ++  + KL+   G    ++++ +  GA       +++  D I +TG     + +M AA+ ++  + LELGGK+P +     +L+VA  + +   +  + GQ C +   ++
Sbjct:  132 SESKIIREPIGVCGQITPWNYPLLQASWKIAPALAAGNTIVMKPSEITPLTTIKVFKLMEEAGVPKGVANLVLGPGATVGDELAVNKDVDLISFTGGIETGKKIMRAASGNVKKIALELGGKNPNIVFKDADLEVAVDQALNAVF-FHAGQVCSAGSRLL 290          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: GABD2_MYCTU (Putative succinate-semialdehyde dehydrogenase [NADP+] 2 OS=Mycobacterium tuberculosis GN=gabD2 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.172e-15
Identity = 52/157 (33.12%), Postives = 77/157 (49.04%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTKDFA 649
            +P GVV +ISPWNYP  L++   V A+ AGNA+VLKP    P  +   A+L+    +  +   +V G  +     +    D + +TG+S     +   A + L     ELGGK+P++   G NL    +      +  N GQ CIS + I   KD A
Sbjct:  146 QPKGVVGVISPWNYPMTLTVSDSVPALVAGNAVVLKPDSQTPYCALACAELLYRAGLPRALYAIVPGPGSVVGTAITDNCDYLMFTGSSATGSRLAEHAGRRLIGFSAELGGKNPMIVARGANLDKVAKAATRACFS-NAGQLCISIERIYVEKDIA 301          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: GABD2_MYCTA (Putative succinate-semialdehyde dehydrogenase [NADP+] 2 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=gabD2 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.172e-15
Identity = 52/157 (33.12%), Postives = 77/157 (49.04%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTKDFA 649
            +P GVV +ISPWNYP  L++   V A+ AGNA+VLKP    P  +   A+L+    +  +   +V G  +     +    D + +TG+S     +   A + L     ELGGK+P++   G NL    +      +  N GQ CIS + I   KD A
Sbjct:  146 QPKGVVGVISPWNYPMTLTVSDSVPALVAGNAVVLKPDSQTPYCALACAELLYRAGLPRALYAIVPGPGSVVGTAITDNCDYLMFTGSSATGSRLAEHAGRRLIGFSAELGGKNPMIVARGANLDKVAKAATRACFS-NAGQLCISIERIYVEKDIA 301          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: GABD2_MYCBP (Putative succinate-semialdehyde dehydrogenase [NADP+] 2 OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=gabD2 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.172e-15
Identity = 52/157 (33.12%), Postives = 77/157 (49.04%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTKDFA 649
            +P GVV +ISPWNYP  L++   V A+ AGNA+VLKP    P  +   A+L+    +  +   +V G  +     +    D + +TG+S     +   A + L     ELGGK+P++   G NL    +      +  N GQ CIS + I   KD A
Sbjct:  146 QPKGVVGVISPWNYPMTLTVSDSVPALVAGNAVVLKPDSQTPYCALACAELLYRAGLPRALYAIVPGPGSVVGTAITDNCDYLMFTGSSATGSRLAEHAGRRLIGFSAELGGKNPMIVARGANLDKVAKAATRACFS-NAGQLCISIERIYVEKDIA 301          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: GABD2_MYCBO (Putative succinate-semialdehyde dehydrogenase [NADP+] 2 OS=Mycobacterium bovis GN=gabD2 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.172e-15
Identity = 52/157 (33.12%), Postives = 77/157 (49.04%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTKDFA 649
            +P GVV +ISPWNYP  L++   V A+ AGNA+VLKP    P  +   A+L+    +  +   +V G  +     +    D + +TG+S     +   A + L     ELGGK+P++   G NL    +      +  N GQ CIS + I   KD A
Sbjct:  146 QPKGVVGVISPWNYPMTLTVSDSVPALVAGNAVVLKPDSQTPYCALACAELLYRAGLPRALYAIVPGPGSVVGTAITDNCDYLMFTGSSATGSRLAEHAGRRLIGFSAELGGKNPMIVARGANLDKVAKAATRACFS-NAGQLCISIERIYVEKDIA 301          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_XANC5 (Betaine aldehyde dehydrogenase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=betB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.172e-15
Identity = 53/157 (33.76%), Postives = 86/157 (54.78%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKL---VGEYMDLSSIRVVEGAVAETSALLDQKWDKICYTGNSRVARIVMA-AAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTK 640
            EP GVV  I  WNYP  ++L     A+AAGNA++ KPSEV P ++  LA++    G    + ++   +GA   T+     + +KI +TG +   R VMA A++  L  V +ELGGKSP++  +  +L +A    +M  +  ++GQ C +   +   +
Sbjct:  141 EPLGVVGAIGAWNYPIQIALWKAAPALAAGNAMIFKPSEVTPLTALKLAEIFTEAGLPDGVFNVLPGDGASVGTALTEHPQIEKISFTGGTATGRKVMASASSSSLKEVTMELGGKSPLIVCADADLDLAADIAMMANF-YSSGQVCTNGTRVFVPR 296          
The following BLAST results are available for this feature:
BLAST of FC869235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 382
Match NameE-valueIdentityDescription
A9A1B_DANRE5.261e-1633.13Aldehyde dehydrogenase family 9 member A1-B OS=Dan... [more]
A9A1A_DANRE5.261e-1633.75Aldehyde dehydrogenase family 9 member A1-A OS=Dan... [more]
AL1L2_MOUSE6.871e-1637.58Probable 10-formyltetrahydrofolate dehydrogenase A... [more]
YOSF_SCHPO8.973e-1627.75Putative aldehyde dehydrogenase-like protein C21C3... [more]
BETB_BACSU8.973e-1630.63Betaine aldehyde dehydrogenase OS=Bacillus subtili... [more]
GABD2_MYCTU1.172e-1533.12Putative succinate-semialdehyde dehydrogenase [NAD... [more]
GABD2_MYCTA1.172e-1533.12Putative succinate-semialdehyde dehydrogenase [NAD... [more]
GABD2_MYCBP1.172e-1533.12Putative succinate-semialdehyde dehydrogenase [NAD... [more]
GABD2_MYCBO1.172e-1533.12Putative succinate-semialdehyde dehydrogenase [NAD... [more]
BETB_XANC51.172e-1533.76Betaine aldehyde dehydrogenase OS=Xanthomonas camp... [more]

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Properties
Property NameValue
Genbank descriptionC31010A04EF AbioticL1 Citrus clementina cDNA clone C31010A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869235 ID=FC869235; Name=FC869235; organism=Citrus clementina; type=EST; length=716bp
GGACATCGTCGACGCTCTTCTCCAAGATCTCGATAAGCCGGAACTTGAAT
CCTCCATTTACGAGGTAGCATTGTTGAAGACTTCTATCAAGTCAGCACTC
AAGGAACTAAAACACTGGATGACACCAGAGAAGGCTAAAACTTCAATTAC
AACTTTTCCTTCATCAGCTGAAATAGTGCCAGAACCATTTGGTGTTGTAT
TAATCATCTCACCATGGAATTATCCTTTCTTGTTGTCTCTCGATCCAGTT
GTTGGGGCTATTGCAGCTGGTAACGCTCTGGTTCTAAAGCCATCTGAAGT
TGCTCCAGCATCGTCTTCATTGCTTGCAAAACTAGTTGGTGAATATATGG
ATTTGTCTTCCATAAGGGTTGTTGAAGGGGCAGTTGCTGAAACGTCTGCA
CTGCTTGATCAAAAGTGGGATAAAATATGTTATACAGGCAATTCAAGAGT
TGCACGCATTGTGATGGCTGCAGCTGCAAAGCATCTAACACCAGTTCTTT
TGGAGCTTGGAGGAAAATCTCCAGTTGTCTTTGATTCGGGCATCAATTTA
AAAGTTGCCTGTAGGCGGATGATTATGGGCAAGTGGGGTTGTAATAATGG
ACAAGCATGCATTTCTCCTGATCACATTATAACGACCAAAGATTTTGCTC
CNAAGCTGCTAGAGTCTCTGAAAAATGAATTGGAGAATTTTTACGGGAAG
AAATCATTGGAATCAA
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