FC869235

Overview
NameFC869235
Unique NameFC869235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15306 contig Ccv1_Contig15306:265..980. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_ECOL5 (Betaine aldehyde dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=betB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.611e-15
Identity = 55/147 (37.41%), Postives = 81/147 (55.10%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQK--WDKICYTGNSRVARIVMA-AAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQAC 610
            EP GVV  I  WNYP  ++L     A+AAGNA++ KPSEV P ++  LA++  E  +      V+ G  AET   L +     K+ +TG     + VMA +AA  L  V +ELGGKSP++     +L++A    +M  +  ++GQ C
Sbjct:  141 EPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYSEAGLPDGVFNVLPGVGAETGQYLTEHPGIAKVSFTGGVASGKKVMANSAASSLKEVTMELGGKSPLIVFDDADLELAADIAMMANF-FSSGQVC 286          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: SSDH_ARATH (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=ALDH5F1 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 51/156 (32.69%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  173 IVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAE--TSALLDQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHII 631
            ++ +P GVV  I+PWN+P  +    V  A+A+G  +V+KPSE+ P ++   A+L  +  +   ++ VV G   E   + L   +  KI +TG++ V + +MAAAA  +  V LELGG +P +     +L VA +  +  K+  N+GQ C+  + ++
Sbjct:  184 VLKQPVGVVGAITPWNFPLAMITRKVGPALASGCTVVVKPSELTPLTALAAAELALQAGVPPGALNVVMGNAPEIGDALLTSPQVRKITFTGSTAVGKKLMAAAAPTVKKVSLELGGNAPSIVFDDADLDVAVKGTLAAKFR-NSGQTCVCANRVL 338          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: GABD2_MYCS2 (Putative succinate-semialdehyde dehydrogenase [NADP+] OS=Mycobacterium smegmatis GN=gabD2 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 51/156 (32.69%), Postives = 77/156 (49.36%), Query Frame = 2
Query:  185 PFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQKWDKICYTGNSRVARIVMAAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTKDFA 649
            P GVV +ISPWNYP  LS+   + A+ AGNA+V+KP    P  +   A+L+ E  +      VV G  +     + +  D + +TG++   R +     + L     ELGGK+P++   G  L VA +      +  N GQ CIS + I   +  A
Sbjct:  147 PKGVVGVISPWNYPMALSISDSIPALLAGNAVVVKPDSQTPYCTLANAELLYEAGLPRDLFAVVPGPGSVVGTAIVENCDYLMFTGSTATGRTLAEQCGRRLIGFSAELGGKNPMIVTRGAKLDVAAKAATRACFS-NAGQLCISIERIYVERAVA 301          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_XANCP (Betaine aldehyde dehydrogenase OS=Xanthomonas campestris pv. campestris GN=betB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 54/157 (34.39%), Postives = 85/157 (54.14%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQ--KWDKICYTGNSRVARIVMA-AAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTK 640
            EP GVV  I  WNYP  ++L     A+AAGNA++ KPSEV P ++  LA++  E  +      V+ G  A     L +  + +KI +TG +   R VMA A++  L  V +ELGGKSP++  +  +L +A    +M  +  ++GQ C +   +   +
Sbjct:  141 EPLGVVGAIGAWNYPIQIALWKAAPALAAGNAMIFKPSEVTPLTALKLAEIFTEAGLPDGVFNVLPGDGASVGHALTEHPEIEKISFTGGTATGRKVMASASSSSLKDVTMELGGKSPLIVCADADLDLAADIAMMANF-YSSGQVCTNGTRVFVPR 296          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_XANCB (Betaine aldehyde dehydrogenase OS=Xanthomonas campestris pv. campestris (strain B100) GN=betB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 54/157 (34.39%), Postives = 85/157 (54.14%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQ--KWDKICYTGNSRVARIVMA-AAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTK 640
            EP GVV  I  WNYP  ++L     A+AAGNA++ KPSEV P ++  LA++  E  +      V+ G  A     L +  + +KI +TG +   R VMA A++  L  V +ELGGKSP++  +  +L +A    +M  +  ++GQ C +   +   +
Sbjct:  141 EPLGVVGAIGAWNYPIQIALWKAAPALAAGNAMIFKPSEVTPLTALKLAEIFTEAGLPDGVFNVLPGDGASVGHALTEHPEIEKISFTGGTATGRKVMASASSSSLKDVTMELGGKSPLIVCADADLDLAADIAMMANF-YSSGQVCTNGTRVFVPR 296          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_XANC8 (Betaine aldehyde dehydrogenase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=betB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 54/157 (34.39%), Postives = 85/157 (54.14%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQ--KWDKICYTGNSRVARIVMA-AAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTK 640
            EP GVV  I  WNYP  ++L     A+AAGNA++ KPSEV P ++  LA++  E  +      V+ G  A     L +  + +KI +TG +   R VMA A++  L  V +ELGGKSP++  +  +L +A    +M  +  ++GQ C +   +   +
Sbjct:  141 EPLGVVGAIGAWNYPIQIALWKAAPALAAGNAMIFKPSEVTPLTALKLAEIFTEAGLPDGVFNVLPGDGASVGHALTEHPEIEKISFTGGTATGRKVMASASSSSLKDVTMELGGKSPLIVCADADLDLAADIAMMANF-YSSGQVCTNGTRVFVPR 296          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_ECOLC (Betaine aldehyde dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=betB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 55/147 (37.41%), Postives = 80/147 (54.42%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQK--WDKICYTGNSRVARIVMA-AAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQAC 610
            EP GVV  I  WNYP  ++L     A+AAGNA++ KPSEV P ++  LA++  E  +      V+ G  AET   L +     K+ +TG     + VMA +AA  L  V +ELGGKSP++     +L +A    +M  +  ++GQ C
Sbjct:  141 EPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYSEAGLPNGVFNVLPGVGAETGQYLTEHPGIAKVSFTGGVASGKKVMANSAASSLKEVTMELGGKSPLIVFDDADLDLAADIAMMANF-FSSGQVC 286          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_ECO7I (Betaine aldehyde dehydrogenase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=betB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 58/158 (36.71%), Postives = 85/158 (53.80%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQK--WDKICYTGNSRVARIVMA-AAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHI-ITTK 640
            EP GVV  I  WNYP  ++L     A+AAGNA++ KPSEV P ++  LA++  E  +      V+ G  AET   L +     K+ +TG     + VMA +AA  L  V +ELGGKSP++     +L +A    +M  +  ++GQ C +   + I TK
Sbjct:  141 EPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYSEAGLPDGVFNVLPGVGAETGQYLTEHPGIAKVSFTGGVASGKKVMANSAASSLKEVTMELGGKSPLIVFDDADLDLAADIAMMANF-FSSGQVCTNGTRVFIPTK 297          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: ALDH_ALTAL (Aldehyde dehydrogenase OS=Alternaria alternata GN=ALTA10 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 66/182 (36.26%), Postives = 92/182 (50.55%), Query Frame = 2
Query:  116 WMTPEKAKTSITTFPSSAEIVPEPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEG----AVAETSALLDQKWDKICYTGNSRVARIVM-AAAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTKD 643
            W    + K   T   S   I  EP GV   I PWN+P L+    +  AIA GN +VLK +E  P S+ +  KL+ E       I V+ G    A A  SA +D   DKI +TG++ V R +M +AA  +L  V LELGGKSP +  +  +L  A   +  G +  N+GQAC +   I   ++
Sbjct:  131 WADKIEGKVVDTAPDSFNYIRKEPIGVCGQIIPWNFPILMWSWKIGPAIATGNTVVLKTAEQTPLSAYIACKLIQEAGFPPGVINVITGFGKIAGAAMSAHMD--IDKIAFTGSTVVGRQIMKSAAGSNLKKVTLELGGKSPNIVFADADLDEAIHWVNFGIY-FNHGQACCAGSRIYVQEE 309          
BLAST of FC869235 vs. ExPASy Swiss-Prot
Match: BETB_STRMK (Betaine aldehyde dehydrogenase OS=Stenotrophomonas maltophilia (strain K279a) GN=betB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 56/157 (35.67%), Postives = 82/157 (52.23%), Query Frame = 2
Query:  182 EPFGVVLIISPWNYPFLLSLDPVVGAIAAGNALVLKPSEVAPASSSLLAKLVGEY-MDLSSIRVVEGAVAETSALLDQK--WDKICYTGNSRVARIVMA-AAAKHLTPVLLELGGKSPVVFDSGINLKVACRRMIMGKWGCNNGQACISPDHIITTK 640
            EP GVV  I  WNYP  +++     A+AAGNA+V KPSEV P ++  LA++  E  +      VV+G   E    L +    +KI +TG     + VMA AA+  L  V +ELGGKSP+V     +L  A    +M  +  ++GQ C +   +   +
Sbjct:  141 EPLGVVAGIGAWNYPIQIAMWKSAPALAAGNAMVFKPSEVTPLTAIRLAEIYTEAGVPAGVFNVVQGPGREIGQWLTEHPVIEKISFTGGVATGKKVMASAASSSLKEVTMELGGKSPLVICDDADLDRAADIAVMANF-FSSGQVCTNGTRVFVPR 296          
The following BLAST results are available for this feature:
BLAST of FC869235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 382
Match NameE-valueIdentityDescription
BETB_ECOL52.611e-1537.41Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
SSDH_ARATH3.410e-1532.69Succinate-semialdehyde dehydrogenase, mitochondria... [more]
GABD2_MYCS23.410e-1532.69Putative succinate-semialdehyde dehydrogenase [NAD... [more]
BETB_XANCP3.410e-1534.39Betaine aldehyde dehydrogenase OS=Xanthomonas camp... [more]
BETB_XANCB3.410e-1534.39Betaine aldehyde dehydrogenase OS=Xanthomonas camp... [more]
BETB_XANC83.410e-1534.39Betaine aldehyde dehydrogenase OS=Xanthomonas camp... [more]
BETB_ECOLC3.410e-1537.41Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECO7I3.410e-1536.71Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
ALDH_ALTAL3.410e-1536.26Aldehyde dehydrogenase OS=Alternaria alternata GN=... [more]
BETB_STRMK4.453e-1535.67Betaine aldehyde dehydrogenase OS=Stenotrophomonas... [more]

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Properties
Property NameValue
Genbank descriptionC31010A04EF AbioticL1 Citrus clementina cDNA clone C31010A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869235 ID=FC869235; Name=FC869235; organism=Citrus clementina; type=EST; length=716bp
GGACATCGTCGACGCTCTTCTCCAAGATCTCGATAAGCCGGAACTTGAAT
CCTCCATTTACGAGGTAGCATTGTTGAAGACTTCTATCAAGTCAGCACTC
AAGGAACTAAAACACTGGATGACACCAGAGAAGGCTAAAACTTCAATTAC
AACTTTTCCTTCATCAGCTGAAATAGTGCCAGAACCATTTGGTGTTGTAT
TAATCATCTCACCATGGAATTATCCTTTCTTGTTGTCTCTCGATCCAGTT
GTTGGGGCTATTGCAGCTGGTAACGCTCTGGTTCTAAAGCCATCTGAAGT
TGCTCCAGCATCGTCTTCATTGCTTGCAAAACTAGTTGGTGAATATATGG
ATTTGTCTTCCATAAGGGTTGTTGAAGGGGCAGTTGCTGAAACGTCTGCA
CTGCTTGATCAAAAGTGGGATAAAATATGTTATACAGGCAATTCAAGAGT
TGCACGCATTGTGATGGCTGCAGCTGCAAAGCATCTAACACCAGTTCTTT
TGGAGCTTGGAGGAAAATCTCCAGTTGTCTTTGATTCGGGCATCAATTTA
AAAGTTGCCTGTAGGCGGATGATTATGGGCAAGTGGGGTTGTAATAATGG
ACAAGCATGCATTTCTCCTGATCACATTATAACGACCAAAGATTTTGCTC
CNAAGCTGCTAGAGTCTCTGAAAAATGAATTGGAGAATTTTTACGGGAAG
AAATCATTGGAATCAA
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