FC869237

Overview
NameFC869237
Unique NameFC869237
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9487 contig Ccv1_Contig9487:1..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869237 vs. ExPASy Swiss-Prot
Match: ODPB_BACST (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus stearothermophilus GN=pdhB PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.136e-29
Identity = 71/167 (42.51%), Postives = 94/167 (56.29%), Query Frame = 1
Query:  232 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVV 729
            + +  AI  AL I L+ DP                R T GL   FG+ RVF+TPL E GI G AIGLA  G R + EIQF  +++   D I  + A+ RYR+G +++   +T+R+P+G   H    HS S E      PGLKVVIP +P  AKGLL+S IRD +PV+
Sbjct:    4 MTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHM-PITIRSPFGGGVHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVI 169          
BLAST of FC869237 vs. ExPASy Swiss-Prot
Match: ODPB_ACHLA (Pyruvate dehydrogenase E1 component subunit beta OS=Acholeplasma laidlawii GN=pdhB PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.616e-29
Identity = 71/167 (42.51%), Postives = 97/167 (58.08%), Query Frame = 1
Query:  232 LNLYSAINQALHIALETDPR-AYXXXXXXXXXXXXRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVV 729
            + L  AINQA+  A+E D                 R T GL  ++G++RVF+TP+ E  IVG A+G+A  G + IAEIQF  +IFP +  +V  AA+ R RS  QF    + +R P+G       +HS++ E  F  +PGLKVV P +P  AKGLLL+ I DP+PVV
Sbjct:    4 ITLLEAINQAIDQAMEKDESIVVFGEDAGFEGGVFRVTAGLQKKYGETRVFDTPIAESAIVGSAVGMAINGLKPIAEIQFDGFIFPGYTDLVTHAARMRNRSRGQFTV-PMVLRLPHGGGIRALEHHSEALEVLFGSIPGLKVVTPSTPYDAKGLLLAAINDPDPVV 169          
BLAST of FC869237 vs. ExPASy Swiss-Prot
Match: ODPB_BACSU (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus subtilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.175e-26
Identity = 66/167 (39.52%), Postives = 90/167 (53.89%), Query Frame = 1
Query:  232 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVV 729
            + +  AI  AL   L+ D                 R T GL   FG+ RVF+TPL E GI G A+GL   G R + EIQF  +++   D +  + A+ RYRSG ++    +T+R+P+G   H    H+ S E      PG+KVVIP +P  AKGLL+S IRD +PVV
Sbjct:    4 MTMIQAITDALRTELKNDENVLVFGEDVGVNGGVFRATEGLQKEFGEDRVFDTPLAESGIGGLALGLGLNGFRPVMEIQFFGFVYEVMDSVSGQMARMRYRSGGRWT-SPVTIRSPFGGGVHTPELHADSLEGLVAQQPGIKVVIPSTPYDAKGLLISAIRDNDPVV 169          
BLAST of FC869237 vs. ExPASy Swiss-Prot
Match: ODPB_STAAW (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MW2) GN=pdhB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.535e-26
Identity = 68/167 (40.72%), Postives = 89/167 (53.29%), Query Frame = 1
Query:  232 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVV 729
            + +  AIN AL   L+ D                 R T GL   FG+ RVF+TPL E GI G A+GLA  G R + E+QF  ++F  FD I  + A+ R+RSG       +T+R+P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S IR  +PVV
Sbjct:    4 MTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGT-KTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVV 169          
BLAST of FC869237 vs. ExPASy Swiss-Prot
Match: ODPB_STAAU (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus GN=pdhB PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.535e-26
Identity = 68/167 (40.72%), Postives = 89/167 (53.29%), Query Frame = 1
Query:  232 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVV 729
            + +  AIN AL   L+ D                 R T GL   FG+ RVF+TPL E GI G A+GLA  G R + E+QF  ++F  FD I  + A+ R+RSG       +T+R+P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S IR  +PVV
Sbjct:    4 MTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGT-KTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVV 169          
BLAST of FC869237 vs. ExPASy Swiss-Prot
Match: ODPB_STAAS (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MSSA476) GN=pdhB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.535e-26
Identity = 68/167 (40.72%), Postives = 89/167 (53.29%), Query Frame = 1
Query:  232 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVV 729
            + +  AIN AL   L+ D                 R T GL   FG+ RVF+TPL E GI G A+GLA  G R + E+QF  ++F  FD I  + A+ R+RSG       +T+R+P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S IR  +PVV
Sbjct:    4 MTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGT-KTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVV 169          
BLAST of FC869237 vs. ExPASy Swiss-Prot
Match: ODPB_STAAR (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MRSA252) GN=pdhB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.535e-26
Identity = 68/167 (40.72%), Postives = 89/167 (53.29%), Query Frame = 1
Query:  232 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVV 729
            + +  AIN AL   L+ D                 R T GL   FG+ RVF+TPL E GI G A+GLA  G R + E+QF  ++F  FD I  + A+ R+RSG       +T+R+P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S IR  +PVV
Sbjct:    4 MTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGT-KTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVV 169          
BLAST of FC869237 vs. ExPASy Swiss-Prot
Match: ODPB_STAAN (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain N315) GN=pdhB PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.535e-26
Identity = 68/167 (40.72%), Postives = 89/167 (53.29%), Query Frame = 1
Query:  232 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVV 729
            + +  AIN AL   L+ D                 R T GL   FG+ RVF+TPL E GI G A+GLA  G R + E+QF  ++F  FD I  + A+ R+RSG       +T+R+P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S IR  +PVV
Sbjct:    4 MTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGT-KTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVV 169          
BLAST of FC869237 vs. ExPASy Swiss-Prot
Match: ODPB_STAAM (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhB PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.535e-26
Identity = 68/167 (40.72%), Postives = 89/167 (53.29%), Query Frame = 1
Query:  232 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVV 729
            + +  AIN AL   L+ D                 R T GL   FG+ RVF+TPL E GI G A+GLA  G R + E+QF  ++F  FD I  + A+ R+RSG       +T+R+P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S IR  +PVV
Sbjct:    4 MTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGT-KTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVV 169          
BLAST of FC869237 vs. ExPASy Swiss-Prot
Match: ODPB_STAAC (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain COL) GN=pdhB PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.005e-26
Identity = 68/167 (40.72%), Postives = 88/167 (52.69%), Query Frame = 1
Query:  232 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVV 729
            + +  AIN AL   L+ D                 R T GL   FG+ RVF+TPL E GI G A+GLA  G R + E+QF  ++F  FD I  + A+ R+RSG       +T+R P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S IR  +PVV
Sbjct:    4 MTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGT-KTAPVTIRGPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVV 169          
The following BLAST results are available for this feature:
BLAST of FC869237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_BACST1.136e-2942.51Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ACHLA9.616e-2942.51Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_BACSU1.175e-2639.52Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAW1.535e-2640.72Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAU1.535e-2640.72Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAS1.535e-2640.72Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAR1.535e-2640.72Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAN1.535e-2640.72Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAM1.535e-2640.72Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAC2.005e-2640.72Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionC31010A06EF AbioticL1 Citrus clementina cDNA clone C31010A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869237 ID=FC869237; Name=FC869237; organism=Citrus clementina; type=EST; length=730bp
GCTTATTCTCAACTCCCTCAAATCCGAACTAAAAACATTTCAACGCAGAC
AAACGCACATGAATTCAATATTTGCAAACTCCACAACCAAAAATCTTGGC
GGAGATTTCACAATATGGCTTCTGGTTTGAGAAGATTTGTGGGTTCCCTT
TCACGGAGAAATCTTTCAACTGCTTGTGCGAACAAGCAGCTAATTCAACA
ACACGATGGGGGTGTTGGCAGTGGCAAGTCTTTGAATTTGTACTCTGCCA
TCAACCAGGCTCTTCATATTGCTTTGGAAACTGATCCACGTGCTTATGTG
TTTGGAGAAGATGTGGGCTTTGGTGGAGTCTTCCGATGCACGACAGGATT
AGCTGATCGATTTGGTAAAAGTCGGGTATTCAATACCCCTCTTTGTGAAC
AGGGCATCGTTGGGTTTGCCATTGGTCTGGCAGCTATGGGAAATCGAGCT
ATAGCTGAAATTCAATTTGCAGATTATATTTTTCCAGCTTTTGATCAGAT
TGTCAATGAAGCTGCTAAGTTCAGATACAGGAGTGGAAATCAATTTAATT
GTGGAGGATTAACAGTAAGAGCCCCTTACGGAGCTGTGGGCCATGGTGGA
CACTATCACTCGCAATCTCCTGAAGCTTTCTTTTGTCACGTTCCTGGTCT
CAAAGTGGTCATTCCTCGAAGCCCACGACAAGCAAAAGGATTATTGCTGT
CATGCATTCGTGATCCGAACCCTGTTGTCT
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