FC869243

Overview
NameFC869243
Unique NameFC869243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9488 contig Ccv1_Contig9488:1..598. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BADH_AMAHP (Betaine aldehyde dehydrogenase, chloroplastic OS=Amaranthus hypochondriacus GN=BADH4 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.919e-44
Identity = 87/162 (53.70%), Postives = 111/162 (68.52%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV G I PWN+PLL+ TWKVAPAL  G + VLK +E   +T L +A++  E GLPPGVLN+++G GP AG  LA H DVDK++FTG   TG  V   AA+  +KPVTLELGGKSP +IF+D D+D+A E   F  F+  GQ C A SR  VHE +  EF+++
Sbjct:  153 GVVGLISPWNYPLLMATWKVAPALAAGCSAVLKPSELASVTCLELAEVCREVGLPPGVLNILTGLGPEAGGPLACHPDVDKVAFTGSTATGSKVMSSAAQL-VKPVTLELGGKSPIVIFEDVDLDKAAEWTAFGCFWTNGQICSATSRLLVHESIAAEFLDR 313          

HSP 2 Score: 26.1794 bits (56), Expect = 1.919e-44
Identity = 10/22 (45.45%), Postives = 14/22 (63.64%), Query Frame = 2
Query:  527 QSGVEQGPQIDPEQFEKVLKYI 592
            + G   GP +   Q+EKVLK+I
Sbjct:  328 EEGCRLGPVVSKSQYEKVLKFI 349          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BADH_SPIOL (Betaine aldehyde dehydrogenase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.244e-44
Identity = 88/162 (54.32%), Postives = 111/162 (68.52%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV G I PWN+PLL+ TWK+APAL  G T VLK +E   +T L   ++ +E GLPPGVLN+++G GP AGA L SH DVDK++FTG   TG  V   AA+  +KPVTLELGGKSP ++F+D D+D+ VE   F  F+  GQ C A SR  VHE +  EFV+K
Sbjct:  150 GVVGLISPWNYPLLMATWKIAPALAAGCTAVLKPSELASVTCLEFGEVCNEVGLPPGVLNILTGLGPDAGAPLVSHPDVDKIAFTGSSATGSKVMASAAQL-VKPVTLELGGKSPIVVFEDVDIDKVVEWTIFGCFWTNGQICSATSRLLVHESIAAEFVDK 310          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BETB_BACSU (Betaine aldehyde dehydrogenase OS=Bacillus subtilis GN=gbsA PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 6.118e-43
Identity = 89/173 (51.45%), Postives = 120/173 (69.36%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEF----VEKARHVQ*G 507
            GV GQI PWN+PLL  +WK+APAL  GNTIV+K +E TPLT + V KL  EAG+P GV N+V G G T G  LA + DVD +SFTG  +TGK +   AA  N+K + LELGGK+P I+F DAD++ AV+ A  A+F++ GQ C AGSR  V + ++D+F    V++A+ ++ G
Sbjct:  142 GVCGQITPWNYPLLQASWKIAPALAAGNTIVMKPSEITPLTTIKVFKLMEEAGVPKGVANLVLGPGATVGDELAVNKDVDLISFTGGIETGKKIMR-AASGNVKKIALELGGKNPNIVFKDADLEVAVDQALNAVFFHAGQVCSAGSRLLVEDAIHDQFLAELVKRAKRIKLG 313          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: BADH_ATRHO (Betaine aldehyde dehydrogenase, chloroplastic OS=Atriplex hortensis PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 7.990e-43
Identity = 85/162 (52.47%), Postives = 112/162 (69.14%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK 486
            GV G I PWN+PLL+ TWK+APAL  G T VLK +E   +T L   ++ +E GLPPGVLN+++G GP AGA + SH D+DK++FTG   TG  +   AA+  +KPVTLELGGKSP I+F+D D++ AVE   F +F+  GQ C A SR  VHE +  EFV++
Sbjct:  155 GVVGLISPWNYPLLMDTWKIAPALAAGCTTVLKPSELASVTCLEFGEVCNEVGLPPGVLNILTGLGPDAGAPIVSHPDIDKVAFTGSSATGSKIMASAAQL-VKPVTLELGGKSPVIMFEDIDIETAVEWTLFGVFWTNGQICSATSRLLVHESIAAEFVDR 315          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ALDA_STAAW (Putative aldehyde dehydrogenase aldA OS=Staphylococcus aureus (strain MW2) GN=aldA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.363e-42
Identity = 88/177 (49.72%), Postives = 118/177 (66.67%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPSE 531
            GV G +V WNFP+LL  WK+APA+  GNTIV++ +  TPL+ L VAK+F E  LP GV+N+++G G  +G A+ +H  VDKLSFTG  D G  V E AAK +L P TLELGGKS  II DDA++D AVE     + +NQG+ C AGSR  VHE++YD+ V + +     + +  P +
Sbjct:  150 GVVGAVVAWNFPMLLAAWKIAPAIAAGNTIVIQPSSSTPLSLLEVAKIFQEV-LPKGVVNILTGKGSESGNAIFNHDGVDKLSFTGSTDVGYQVAEAAAK-HLVPATLELGGKSANIILDDANLDLAVEGIQLGILFNQGEVCSAGSRLLVHEKIYDQLVPRLQEAFSNIKVGDPQD 324          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ALDA_STAAS (Putative aldehyde dehydrogenase aldA OS=Staphylococcus aureus (strain MSSA476) GN=aldA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.363e-42
Identity = 88/177 (49.72%), Postives = 118/177 (66.67%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPSE 531
            GV G +V WNFP+LL  WK+APA+  GNTIV++ +  TPL+ L VAK+F E  LP GV+N+++G G  +G A+ +H  VDKLSFTG  D G  V E AAK +L P TLELGGKS  II DDA++D AVE     + +NQG+ C AGSR  VHE++YD+ V + +     + +  P +
Sbjct:  150 GVVGAVVAWNFPMLLAAWKIAPAIAAGNTIVIQPSSSTPLSLLEVAKIFQEV-LPKGVVNILTGKGSESGNAIFNHDGVDKLSFTGSTDVGYQVAEAAAK-HLVPATLELGGKSANIILDDANLDLAVEGIQLGILFNQGEVCSAGSRLLVHEKIYDQLVPRLQEAFSNIKVGDPQD 324          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ALDA_STAAN (Putative aldehyde dehydrogenase aldA OS=Staphylococcus aureus (strain N315) GN=aldA PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.363e-42
Identity = 88/177 (49.72%), Postives = 118/177 (66.67%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPSE 531
            GV G +V WNFP+LL  WK+APA+  GNTIV++ +  TPL+ L VAK+F E  LP GV+N+++G G  +G A+ +H  VDKLSFTG  D G  V E AAK +L P TLELGGKS  II DDA++D AVE     + +NQG+ C AGSR  VHE++YD+ V + +     + +  P +
Sbjct:  150 GVVGAVVAWNFPMLLAAWKIAPAIAAGNTIVIQPSSSTPLSLLEVAKIFQEV-LPKGVVNILTGKGSESGNAIFNHDGVDKLSFTGSTDVGYQVAEAAAK-HLVPATLELGGKSANIILDDANLDLAVEGIQLGILFNQGEVCSAGSRLLVHEKIYDQLVPRLQEAFSNIKVGDPQD 324          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ALDA_STAAM (Putative aldehyde dehydrogenase aldA OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=aldA PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.363e-42
Identity = 88/177 (49.72%), Postives = 118/177 (66.67%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPSE 531
            GV G +V WNFP+LL  WK+APA+  GNTIV++ +  TPL+ L VAK+F E  LP GV+N+++G G  +G A+ +H  VDKLSFTG  D G  V E AAK +L P TLELGGKS  II DDA++D AVE     + +NQG+ C AGSR  VHE++YD+ V + +     + +  P +
Sbjct:  150 GVVGAVVAWNFPMLLAAWKIAPAIAAGNTIVIQPSSSTPLSLLEVAKIFQEV-LPKGVVNILTGKGSESGNAIFNHDGVDKLSFTGSTDVGYQVAEAAAK-HLVPATLELGGKSANIILDDANLDLAVEGIQLGILFNQGEVCSAGSRLLVHEKIYDQLVPRLQEAFSNIKVGDPQD 324          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ALDA_STAAC (Putative aldehyde dehydrogenase aldA OS=Staphylococcus aureus (strain COL) GN=aldA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.363e-42
Identity = 88/177 (49.72%), Postives = 118/177 (66.67%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPSE 531
            GV G +V WNFP+LL  WK+APA+  GNTIV++ +  TPL+ L VAK+F E  LP GV+N+++G G  +G A+ +H  VDKLSFTG  D G  V E AAK +L P TLELGGKS  II DDA++D AVE     + +NQG+ C AGSR  VHE++YD+ V + +     + +  P +
Sbjct:  150 GVVGAVVAWNFPMLLAAWKIAPAIAAGNTIVIQPSSSTPLSLLEVAKIFQEV-LPKGVVNILTGKGSESGNAIFNHDGVDKLSFTGSTDVGYQVAEAAAK-HLVPATLELGGKSANIILDDANLDLAVEGIQLGILFNQGEVCSAGSRLLVHEKIYDQLVPRLQEAFSNIKVGNPQD 324          
BLAST of FC869243 vs. ExPASy Swiss-Prot
Match: ALDA_STAAB (Putative aldehyde dehydrogenase aldA OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=aldA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.363e-42
Identity = 88/177 (49.72%), Postives = 118/177 (66.67%), Query Frame = 1
Query:    1 GVAGQIVPWNFPLLLFTWKVAPALTCGNTIVLKSAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKARHVQ*GVLLAIPSE 531
            GV G +V WNFP+LL  WK+APA+  GNTIV++ +  TPL+ L VAK+F E  LP GV+N+++G G  +G A+ +H  VDKLSFTG  D G  V E AAK +L P TLELGGKS  II DDA++D AVE     + +NQG+ C AGSR  VHE++YD+ V + +     + +  P +
Sbjct:  150 GVVGAVVAWNFPMLLAAWKIAPAIAAGNTIVIQPSSSTPLSLLEVAKIFQEV-LPKGVVNILTGKGSESGNAIFNHDGVDKLSFTGSTDVGYQVAEAAAK-HLVPATLELGGKSANIILDDANLDLAVEGIQLGILFNQGEVCSAGSRLLVHEKIYDQLVPRLQEAFSNIKVGDPQD 324          
The following BLAST results are available for this feature:
BLAST of FC869243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
BADH_AMAHP1.919e-4453.70Betaine aldehyde dehydrogenase, chloroplastic OS=A... [more]
BADH_SPIOL3.244e-4454.32Betaine aldehyde dehydrogenase, chloroplastic OS=S... [more]
BETB_BACSU6.118e-4351.45Betaine aldehyde dehydrogenase OS=Bacillus subtili... [more]
BADH_ATRHO7.990e-4352.47Betaine aldehyde dehydrogenase, chloroplastic OS=A... [more]
ALDA_STAAW1.363e-4249.72Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]
ALDA_STAAS1.363e-4249.72Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]
ALDA_STAAN1.363e-4249.72Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]
ALDA_STAAM1.363e-4249.72Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]
ALDA_STAAC1.363e-4249.72Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]
ALDA_STAAB1.363e-4249.72Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]

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Properties
Property NameValue
Genbank descriptionC31010B01EF AbioticL1 Citrus clementina cDNA clone C31010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869243 ID=FC869243; Name=FC869243; organism=Citrus clementina; type=EST; length=596bp
GGCGTTGCTGGCCAGATAGTTCCCTGGAACTTTCCTCTTCTCTTGTTTAC
TTGGAAAGTAGCGCCTGCACTAACTTGTGGCAATACTATTGTTCTAAAGT
CTGCTGAGCAAACGCCTTTGACTGCTCTGTATGTGGCAAAGCTATTCCAT
GAGGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCC
AACAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTT
TTACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAA
AGCAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTAT
AATATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTG
CTTTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTAT
GTACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAGGCACGTGCA
ATGAGGCGTATTGTTGGCGATCCCTTCAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAAGTACATAAGGT
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