FC869251
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC869251 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 4.625e-23 Identity = 64/135 (47.41%), Postives = 80/135 (59.26%), Query Frame = 2 Query: 230 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGSTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRI 616 WYG DR FL + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G I PE +K G G EAVWFK GA + L+Y G NLV A ++A ++VL+G E YR+ Sbjct: 48 WYGADRPKFLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFG-EAVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAIWATQVVLMGLIEGYRV 175
BLAST of FC869251 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 6.040e-23 Identity = 58/132 (43.94%), Postives = 77/132 (58.33%), Query Frame = 2 Query: 230 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGSTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 616 WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ Sbjct: 49 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRV 176
BLAST of FC869251 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 6.040e-23 Identity = 60/132 (45.45%), Postives = 78/132 (59.09%), Query Frame = 2 Query: 230 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGSTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 616 WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G PE K G G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YR+ Sbjct: 49 WYGPDRPKYLGPF---SEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFG-EAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRV 176
BLAST of FC869251 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 7.889e-23 Identity = 56/132 (42.42%), Postives = 77/132 (58.33%), Query Frame = 2 Query: 230 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGSTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRI 616 WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G + +++ +++L+G E YR+ Sbjct: 48 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRV 175
BLAST of FC869251 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 7.889e-23 Identity = 58/132 (43.94%), Postives = 77/132 (58.33%), Query Frame = 2 Query: 230 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGSTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 616 WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE F + G G EAVW K G+ + L+Y G + + A+ A +++L+G E YR+ Sbjct: 51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRV 178
BLAST of FC869251 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 7.889e-23 Identity = 59/132 (44.70%), Postives = 76/132 (57.58%), Query Frame = 2 Query: 230 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGSTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 616 WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L Y G + + A+ A ++VL+G E YR+ Sbjct: 48 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFG-EAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 175
BLAST of FC869251 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 7.889e-23 Identity = 59/132 (44.70%), Postives = 76/132 (57.58%), Query Frame = 2 Query: 230 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGSTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 616 WYGPDR +L E P YLTGE PGDYG+D GLS P F+K + E+IH RW MLGA G + PE F + G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YR+ Sbjct: 50 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 177
BLAST of FC869251 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.030e-22 Identity = 59/132 (44.70%), Postives = 77/132 (58.33%), Query Frame = 2 Query: 230 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGSTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 616 WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EA WFK G+ + L+Y G I + A+ A +++L+G E YRI Sbjct: 29 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRI 156
BLAST of FC869251 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.295e-22 Identity = 58/132 (43.94%), Postives = 77/132 (58.33%), Query Frame = 2 Query: 230 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGSTLNYFGKN--IPINLVFAV-IAEIVLVGGAEYYRI 616 WYG DR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH RWAMLGA G + PE +K G G EAVWFK G+ + L+Y G I + A+ A++VL+G E YR+ Sbjct: 49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRV 176
BLAST of FC869251 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 2.998e-22 Identity = 58/132 (43.94%), Postives = 76/132 (57.58%), Query Frame = 2 Query: 230 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGSTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 616 WYGPDR +L E P YLTGE PGDYG+D LS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YR+ Sbjct: 51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 178 The following BLAST results are available for this feature:
BLAST of FC869251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >FC869251 ID=FC869251; Name=FC869251; organism=Citrus clementina; type=EST; length=631bpback to top |