FC869251

Overview
NameFC869251
Unique NameFC869251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length631
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9360 contig Ccv1_Contig9360:57..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869251 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.998e-22
Identity = 58/132 (43.94%), Postives = 77/132 (58.33%), Query Frame = 2
Query:  230 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGSTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 616
            WYGP+R  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YR+
Sbjct:   51 WYGPNRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 178          
BLAST of FC869251 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.998e-22
Identity = 59/132 (44.70%), Postives = 77/132 (58.33%), Query Frame = 2
Query:  230 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGSTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRI 616
            WYG DR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EA WFK G+ +     L+Y G    +   +L+     ++VL+G  E YRI
Sbjct:   50 WYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRI 177          
BLAST of FC869251 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.915e-22
Identity = 58/132 (43.94%), Postives = 77/132 (58.33%), Query Frame = 2
Query:  230 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGSTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 616
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G    I    + A+ A ++VL+G  E YR+
Sbjct:   21 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRV 148          
BLAST of FC869251 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.915e-22
Identity = 57/132 (43.18%), Postives = 78/132 (59.09%), Query Frame = 2
Query:  230 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGSTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 616
            W+GPD   +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YRI
Sbjct:   12 WHGPDGVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRI 139          
BLAST of FC869251 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.113e-22
Identity = 59/132 (44.70%), Postives = 75/132 (56.82%), Query Frame = 2
Query:  230 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGSTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 616
            WYG DR  FL        E P YL GE  GDYG+D  GLS  P+ F++ +  E+IHARWAMLGA G + PE   K G   G EAVWFK GA +     L+Y G    +    + A+ A ++VL+G  E YR+
Sbjct:   52 WYGADRPKFLGPF---SGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 179          
BLAST of FC869251 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.113e-22
Identity = 60/135 (44.44%), Postives = 79/135 (58.52%), Query Frame = 2
Query:  230 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGSTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRI 616
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G     NLV A  ++A    ++VL+G  E YR+
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP---NLVHAQSILAIWACQVVLMGFVEGYRV 176          
BLAST of FC869251 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.113e-22
Identity = 59/132 (44.70%), Postives = 77/132 (58.33%), Query Frame = 2
Query:  230 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGSTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 616
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G    I    + AV A ++VL+G  E YR+
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRV 176          
BLAST of FC869251 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.113e-22
Identity = 58/132 (43.94%), Postives = 79/132 (59.85%), Query Frame = 2
Query:  230 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGSTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 616
            WYG DR ++L  G    S  P YL+GE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   K G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YR+
Sbjct:   49 WYGSDRPLYL--GPFSGSP-PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFG-EAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRV 176          
BLAST of FC869251 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.678e-22
Identity = 56/132 (42.42%), Postives = 77/132 (58.33%), Query Frame = 2
Query:  230 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGSTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 616
            WYG DR  +L        E P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YR+
Sbjct:   50 WYGSDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV 177          
BLAST of FC869251 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.678e-22
Identity = 56/132 (42.42%), Postives = 77/132 (58.33%), Query Frame = 2
Query:  230 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGSTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 616
            WYG DR  +L        E P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YR+
Sbjct:   50 WYGSDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV 177          
The following BLAST results are available for this feature:
BLAST of FC869251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB23_NICPL2.998e-2243.94Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB21_WHEAT2.998e-2244.70Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_SOLLC3.915e-2243.94Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB21_PEA3.915e-2243.18Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB2_PHYPA5.113e-2244.70Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_SOLLC5.113e-2244.44Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_TOBAC5.113e-2244.70Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB23_POLMU5.113e-2243.94Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB22_ARATH6.678e-2242.42Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH6.678e-2242.42Chlorophyll a-b binding protein 165/180, chloropla... [more]

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Properties
Property NameValue
Genbank descriptionC31010B10EF AbioticL1 Citrus clementina cDNA clone C31010B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869251 ID=FC869251; Name=FC869251; organism=Citrus clementina; type=EST; length=631bp
TCTGAAGATGGCTTCATTGGCAGCATCGCCCACTCCTGCTGCCTCCATTG
GAGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTGTTAGG
ACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTTGCTCT
CTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGTCGCCG
TCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGACCGAAGA
ATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAGTACTT
GACCGGAGAAGTTCCCGGAGACTATGGTTACGATCCTTTTGGTCTCAGCA
AGAAACCAGACGACTTCAGCAAATATCAGGCATATGAATTGATTCATGCC
AGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCCTTTAA
CAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGACTGGAG
CTCTACTTCTTGATGGAAGCACATTGAACTACTTCGGAAAGAACATCCCA
ATCAACCTTGTTTTTGCTGTCATTGCTGAGATTGTTCTTGTAGGTGGTGC
TGAATATTATAGAATCACCACGGTTTGGATT
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