FC869284

Overview
NameFC869284
Unique NameFC869284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length746
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869284 vs. ExPASy Swiss-Prot
Match: HEM1_ANAVT (Glutamyl-tRNA reductase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=hemA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.175e-19
Identity = 46/88 (52.27%), Postives = 65/88 (73.86%), Query Frame = 1
Query:  424 SIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHGF 687
            +I V+GLS  TAPVE+REKL+IPE +   AI +L +  HI+E A+LSTCNR+EIY+VA     G++EVT+++S+ S +PV  L +H F
Sbjct:    2 NIAVVGLSHKTAPVEIREKLSIPEPQTESAIAQLTSYPHIDEVAILSTCNRLEIYIVAGETDHGIREVTQFLSEHSKLPVHSLRQHLF 89          
BLAST of FC869284 vs. ExPASy Swiss-Prot
Match: HEM1_ANASP (Glutamyl-tRNA reductase OS=Anabaena sp. (strain PCC 7120) GN=hemA PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 7.175e-19
Identity = 46/88 (52.27%), Postives = 65/88 (73.86%), Query Frame = 1
Query:  424 SIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHGF 687
            +I V+GLS  TAPVE+REKL+IPE +   AI +L +  HI+E A+LSTCNR+EIY+VA     G++EVT+++S+ S +PV  L +H F
Sbjct:    2 NIAVVGLSHKTAPVEIREKLSIPEPQTESAIAQLTSYPHIDEVAILSTCNRLEIYIVAGETDHGIREVTQFLSEHSKLPVHSLRQHLF 89          
BLAST of FC869284 vs. ExPASy Swiss-Prot
Match: HEM1_TRIEI (Glutamyl-tRNA reductase OS=Trichodesmium erythraeum (strain IMS101) GN=hemA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.371e-19
Identity = 46/88 (52.27%), Postives = 64/88 (72.73%), Query Frame = 1
Query:  424 SIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHGF 687
            +I VIGLS  TAPVE+REKL++PE E   AI ELC+  + +E  +LSTCNR+EIYVV      G++EVT+++S++S IP+ +L  H F
Sbjct:    2 NIAVIGLSHKTAPVEVREKLSLPETEIQNAISELCSGTYTQEVGILSTCNRLEIYVVTNEMQPGIREVTQFLSESSKIPLNQLRPHLF 89          
BLAST of FC869284 vs. ExPASy Swiss-Prot
Match: HEM1_CYAPA (Glutamyl-tRNA reductase OS=Cyanophora paradoxa GN=hemA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.371e-19
Identity = 43/88 (48.86%), Postives = 65/88 (73.86%), Query Frame = 1
Query:  424 SIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHGF 687
            +I+V+GLS  TAPV+ REKL+IP+     AI ELCN  HIEE A+LSTCNR+EIY++    ++G++E T++++ +S + + EL +H F
Sbjct:    2 NIIVVGLSHKTAPVDFREKLSIPKVRIGEAIRELCNYPHIEEVAILSTCNRLEIYLLTSDTYQGIREATQFLADSSDLSLPELRQHLF 89          
BLAST of FC869284 vs. ExPASy Swiss-Prot
Match: HEM1_NOSP7 (Glutamyl-tRNA reductase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=hemA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.088e-18
Identity = 43/88 (48.86%), Postives = 65/88 (73.86%), Query Frame = 1
Query:  424 SIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHGF 687
            +I V+GLS  TAPVE+REKL+IPE +   AI +L +  HI+E A+LSTCNR+EIY+V     +G++E+T+++++ S +PV  L +H F
Sbjct:    2 NIAVVGLSHKTAPVEVREKLSIPEPQIESAIAQLASYPHIDEVAILSTCNRLEIYIVTSEADQGIREITQFLAEYSKLPVLSLRQHLF 89          
BLAST of FC869284 vs. ExPASy Swiss-Prot
Match: HEM1_ACAM1 (Glutamyl-tRNA reductase OS=Acaryochloris marina (strain MBIC 11017) GN=hemA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.036e-17
Identity = 44/88 (50.00%), Postives = 65/88 (73.86%), Query Frame = 1
Query:  424 SIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHGF 687
            +I V+GLS  TAPV++REKL+IP+    +A  +L +  H+EE A+LSTCNRME+YVVA     G++E+T+++S+ S IP+ EL +H F
Sbjct:    2 NIAVVGLSHKTAPVDVREKLSIPDDVKEKATSQLRSYPHLEEVAILSTCNRMEVYVVAQETDDGIRELTQFLSEWSQIPLLELRQHLF 89          
BLAST of FC869284 vs. ExPASy Swiss-Prot
Match: HEM1_SYNP6 (Glutamyl-tRNA reductase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=hemA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.937e-17
Identity = 44/87 (50.57%), Postives = 62/87 (71.26%), Query Frame = 1
Query:  427 IVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHGF 687
            + V+GLS  TAPV +REKL+IPE +   AI +L +  HIEE A+LSTCNR+EIY V  +   GV+E+T+++S+ S +P+ EL  H F
Sbjct:    3 LAVVGLSHRTAPVAVREKLSIPEQQVEAAIQQLKSYPHIEEVAILSTCNRLEIYCVTRATEPGVREITQFLSEHSHLPLGELRPHLF 89          
BLAST of FC869284 vs. ExPASy Swiss-Prot
Match: HEM1_SYNE7 (Glutamyl-tRNA reductase OS=Synechococcus elongatus (strain PCC 7942) GN=hemA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.937e-17
Identity = 44/87 (50.57%), Postives = 62/87 (71.26%), Query Frame = 1
Query:  427 IVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHGF 687
            + V+GLS  TAPV +REKL+IPE +   AI +L +  HIEE A+LSTCNR+EIY V  +   GV+E+T+++S+ S +P+ EL  H F
Sbjct:    3 LAVVGLSHRTAPVAVREKLSIPEQQVEAAIQQLKSYPHIEEVAILSTCNRLEIYCVTRATEPGVREITQFLSEHSHLPLGELRPHLF 89          
BLAST of FC869284 vs. ExPASy Swiss-Prot
Match: HEM1_SYNJA (Glutamyl-tRNA reductase OS=Synechococcus sp. (strain JA-3-3Ab) GN=hemA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.142e-17
Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 1
Query:  427 IVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHGF 687
            I V+GLS  TAPVE+RE+L+IPEAE    I +L    HIEEAA+LSTCNR+E+Y+V      GV++  +++++  GIP+ +L  H F
Sbjct:    3 IAVVGLSHRTAPVEIRERLSIPEAEVGERIQQLRAHPHIEEAAILSTCNRLEVYIVTPEMESGVRQTMQFLAEAKGIPLPQLRPHLF 89          
BLAST of FC869284 vs. ExPASy Swiss-Prot
Match: HEM1_THEEB (Glutamyl-tRNA reductase OS=Thermosynechococcus elongatus (strain BP-1) GN=hemA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.715e-17
Identity = 43/83 (51.81%), Postives = 60/83 (72.29%), Query Frame = 1
Query:  424 SIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAEL 672
            +I VIGLS  TAPV++REKL++PE    RA+  LC   HI+EA +LSTCNR+EIY+V      GV+EV +++S+ S IP+ +L
Sbjct:    2 NIAVIGLSHKTAPVDVREKLSVPEDVRERALQHLCGYAHIQEATILSTCNRLEIYIVTSDTEVGVREVHQFLSEWSHIPLPQL 84          
The following BLAST results are available for this feature:
BLAST of FC869284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
HEM1_ANAVT7.175e-1952.27Glutamyl-tRNA reductase OS=Anabaena variabilis (st... [more]
HEM1_ANASP7.175e-1952.27Glutamyl-tRNA reductase OS=Anabaena sp. (strain PC... [more]
HEM1_TRIEI9.371e-1952.27Glutamyl-tRNA reductase OS=Trichodesmium erythraeu... [more]
HEM1_CYAPA9.371e-1948.86Glutamyl-tRNA reductase OS=Cyanophora paradoxa GN=... [more]
HEM1_NOSP72.088e-1848.86Glutamyl-tRNA reductase OS=Nostoc punctiforme (str... [more]
HEM1_ACAM11.036e-1750.00Glutamyl-tRNA reductase OS=Acaryochloris marina (s... [more]
HEM1_SYNP63.937e-1750.57Glutamyl-tRNA reductase OS=Synechococcus sp. (stra... [more]
HEM1_SYNE73.937e-1750.57Glutamyl-tRNA reductase OS=Synechococcus elongatus... [more]
HEM1_SYNJA5.142e-1749.43Glutamyl-tRNA reductase OS=Synechococcus sp. (stra... [more]
HEM1_THEEB6.715e-1751.81Glutamyl-tRNA reductase OS=Thermosynechococcus elo... [more]

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Properties
Property NameValue
Genbank descriptionC31010E09EF AbioticL1 Citrus clementina cDNA clone C31010E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869284 ID=FC869284; Name=FC869284; organism=Citrus clementina; type=EST; length=746bp
GATTTGTTCAACATTCCATAAAACCTCTGTATACCCTCCCATCCGGCCTC
AATTTTTTTGAGGGGTCTGGGGGTTTTATCATTATTATCATTAGGGCACA
AGATAATTTTTGAACGAAGATTCAGAATCATGTCGTTTTCAAGTGGATTT
GCCACCGCTTTGGCCGGTTCAAAGATGGAAACAACTTTGTTATTCAATCT
TTCTTCTTCCTCTTCTTCTTCTTCAGCGTTGTTTATGAAGGGTGTTCAAA
GTCAACTCGGTCAACAAATACGGGTGGCTTGTAAACCAAATCGGAACGAG
AGAAATTTGCAGCAGAGCCGGAGAGGCGTTGTTAGATGCGAAGTCGCAGT
TGATCCCTCCTCCGCTTCCGCCCTCGAGCAGCTCAAGGCCTCTGCCCCTG
ACCGATACACGAAGGAAAGGAGCAGCATTGTGGTCATTGGGCTCAGTGTT
CACACTGCACCTGTTGAGATGCGAGAAAAACTTGCCATTCCTGAGGCTGA
ATGGCCACGGGCCATCGGAGAGTTGTGTAACTTAAATCATATAGAGGAGG
CCGCTGTCCTTAGCACCTGCAACAGAATGGAGATATATGTTGTAGCTCTC
TCTCAGCATCGTGGAGTCAAAGAAGTGACTGAGTGGATGTCAAAGACAAG
TGGGATCCCCGTTGCAGAGCTTTGTGAGCACGGTTTTTGCTGTATAACAA
GATGCTCACAGCATCTCTTTGAGTATCACGGGTCTTGATCCCTTGT
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