FC869292

Overview
NameFC869292
Unique NameFC869292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14383 contig Ccv1_Contig14383:512..1254. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYA_SOLTU (Phytochrome A OS=Solanum tuberosum GN=PHYA PE=2 SV=2)

HSP 1 Score: 248.054 bits (632), Expect = 3.854e-65
Identity = 122/244 (50.00%), Postives = 167/244 (68.44%), Query Frame = 2
Query:    2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFG---SFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKV 724
            VRLIETA+ PIF VD  G +NGWN KVAELTGLP  EA+GK L+  +V + S   V  ++  AL G+E++NVE +++     +  S + ++VNAC S+D +++V GVCF+ QDIT +K +MDKF R++GDY AIIQ+ +PLIPPIF +D+   CSEWN+AM  +TGW R +V+ KML  E+FG   + CR+K Q+    F ++L   ITGQ +E  PFGFF R G++VE  L  S+R D  G V
Sbjct:  622 VRLIETASVPIFAVDVDGQVNGWNTKVAELTGLPVDEAIGKHLLT-LVEDSSVDTVNKMLELALQGQEERNVEFEIKTHGPSRDSSPISLIVNACASKDVRDSVVGVCFIAQDITGQKSIMDKFTRIEGDYRAIIQNPHPLIPPIFGTDQFGWCSEWNSAMTMLTGWRRDDVMDKMLLGEVFGTQAACCRLKNQEAFVNFGVILNNAITGQESEKIPFGFFARYGKYVECLLCVSKRLDKEGAV 864          
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYA_SOYBN (Phytochrome A OS=Glycine max GN=PHYA PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.607e-63
Identity = 121/244 (49.59%), Postives = 163/244 (66.80%), Query Frame = 2
Query:    2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFG---SFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKV 724
            VRL  TAT PI  VD  G +NGWN K+AELTGLP  EA GK L+  +V + S   V+ ++  ALLG+E+KNV+ +++    +     + ++VN C SRD ++NV GVCFV  DIT +K +MDKFIR++GDY+AI+Q+ NPLIPPIF +DE   C EWN AM K+TGW R EV+ KML  EIFG   + CR+K Q+      ++L + +TG  TE  PFGFF R G++VE  L+ S++ D  G V
Sbjct:  629 VRLDYTATVPILAVDVDGLVNGWNIKIAELTGLPIGEATGKHLLT-LVEDSSTDRVKKMLNLALLGEEEKNVQFEIKTLGSKMDSGPISLVVNRCASRDLRDNVVGVCFVAHDITAQKNVMDKFIRIEGDYKAIVQNRNPLIPPIFGTDEFGWCCEWNPAMMKLTGWKREEVMDKMLLGEIFGTQMAACRLKNQEAFVNLGVVLNKAMTGSETEKVPFGFFARNGKYVECLLSVSKKLDVEGLV 871          
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYA1_TOBAC (Phytochrome A1 OS=Nicotiana tabacum GN=PHYA1 PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 6.152e-63
Identity = 121/244 (49.59%), Postives = 162/244 (66.39%), Query Frame = 2
Query:    2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFG---SFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKV 724
            VRLIETA+ PIF VD  G +NGWN K+AELTGLP  EA+G  L+  +V + S   V  ++  AL GKE++NVE +++        S + ++VNAC SRD  ++V GVCF+ QDIT +K +MDKF R++GDY AIIQ+ +PLIPPIF +D+   CSEWN+AM K+TGW R +VI KML  E+FG   + CR+K Q+    F ++L   +TGQ      FGFF R G++VE  L  S+R D  G V
Sbjct:  622 VRLIETASVPIFAVDVDGQLNGWNTKIAELTGLPVDEAIGNHLLT-LVEDSSVDTVSKMLELALQGKEERNVEFEIKTHGPSGDSSPISLIVNACASRDVGDSVVGVCFIAQDITGQKNIMDKFTRIEGDYRAIIQNPHPLIPPIFGTDQFGWCSEWNSAMTKLTGWRRDDVIDKMLLGEVFGTQAACCRLKNQEAFVNFGVVLNNAMTGQECAKISFGFFARNGKYVECLLCVSKRLDREGAV 864          
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYA_POPTM (Phytochrome A OS=Populus tremuloides GN=PHYA PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.790e-62
Identity = 118/244 (48.36%), Postives = 164/244 (67.21%), Query Frame = 2
Query:    2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFG---SFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKV 724
            VRLIETAT PI  VD  G +NGWN K++ELTGL   +A+GK L+  +V + S   V+ ++  AL GKE++N++ +++    + +   + ++VNAC SRD   NV GVCFVGQDIT +K++MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN AM  +TGW R EV+ KML  E+FG   + CR+K Q+      ++L   +TGQ +E   FGFF R G++VE  L  S++ D  G V
Sbjct:  622 VRLIETATVPILAVDVDGLVNGWNTKISELTGLLVDKAIGKHLLT-LVEDSSVDIVKRMLFLALQGKEEQNIQFEIKTHGSKSECGPICLVVNACASRDLHENVVGVCFVGQDITGQKMVMDKFTRIEGDYKAIVQNRNPLIPPIFGTDEFGWCSEWNPAMTNLTGWKREEVLDKMLLGEVFGLNMACCRLKNQEAFVNLGVVLNTAMTGQESEKVSFGFFARTGKYVECLLCVSKKLDREGAV 864          
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYC_ORYSJ (Phytochrome C OS=Oryza sativa subsp. japonica GN=PHYC PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.338e-62
Identity = 120/247 (48.58%), Postives = 168/247 (68.02%), Query Frame = 2
Query:    2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFGSF---CRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKVLAA 733
            VRLIETATAPI  VD +G+INGWN K AELTGLP  EA+GK L+D V+ ++S   V+ ++  AL G E++N+++KL+ F  Q+ +  V ++VNAC SRD    V GVCFV QD+T + ++MDK+ R+QGDY AI+++ + LIPPIF  ++   C EWN AM+K+TG  R + + K+L  E+F      CR+K    LTK  IL+   I+GQ  E   FGFFN  G+++E  +TA++RTDA GK+  A
Sbjct:  625 VRLIETATAPILAVDITGSINGWNNKAAELTGLPVMEAIGKPLVDLVI-DDSVEVVKQILNSALQGIEEQNLQIKLKTFNHQENNGPVILMVNACCSRDLSEKVVGVCFVAQDMTGQNIIMDKYTRIQGDYVAIVKNPSELIPPIFMINDLGSCLEWNEAMQKITGIKREDAVDKLLIGEVFTHHEYGCRVKDHGTLTKLSILMNTVISGQDPEKLLFGFFNTDGKYIESLMTATKRTDAEGKITGA 870          
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYC_ORYSI (Phytochrome C OS=Oryza sativa subsp. indica GN=PHYC PE=2 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 2.338e-62
Identity = 120/247 (48.58%), Postives = 168/247 (68.02%), Query Frame = 2
Query:    2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFGSF---CRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKVLAA 733
            VRLIETATAPI  VD +G+INGWN K AELTGLP  EA+GK L+D V+ ++S   V+ ++  AL G E++N+++KL+ F  Q+ +  V ++VNAC SRD    V GVCFV QD+T + ++MDK+ R+QGDY AI+++ + LIPPIF  ++   C EWN AM+K+TG  R + + K+L  E+F      CR+K    LTK  IL+   I+GQ  E   FGFFN  G+++E  +TA++RTDA GK+  A
Sbjct:  625 VRLIETATAPILAVDITGSINGWNNKAAELTGLPVMEAIGKPLVDLVI-DDSVEVVKQILNSALQGIEEQNLQIKLKTFNHQENNGPVILMVNACCSRDLSEKVVGVCFVAQDMTGQNIIMDKYTRIQGDYVAIVKNPSELIPPIFMINDLGSCLEWNEAMQKITGIKREDAVDKLLIGEVFTHHEYGCRVKDHGTLTKLSILMNTVISGQDPEKLLFGFFNTDGKYIESLMTATKRTDAEGKITGA 870          
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYA_ORYSJ (Phytochrome A OS=Oryza sativa subsp. japonica GN=PHYA PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.585e-61
Identity = 118/244 (48.36%), Postives = 163/244 (66.80%), Query Frame = 2
Query:    2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFGS---FCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKV 724
            VRL+ETAT PI  VDS+G +NGWN KVAELTGL   EA+G+ ++  VV E S   V+ ++  AL GKE+K V+ +++    ++    V ++VNAC SRD  ++V GVCFV QD+T  K++MDKF R++GDY+AII + +PLIPPIF +DE   CSEWN AM K+TGW R EVI KML  E+F S    C +K +D      IL+   + G  TE  PF FF+R G+++E  L+ +R+ +A G +
Sbjct:  625 VRLMETATVPILAVDSNGLVNGWNQKVAELTGLRVDEAIGRHILT-VVEESSVPVVQRMLYLALQGKEEKEVKFEVKTHGSKRDDGPVILVVNACASRDLHDHVVGVCFVAQDMTVHKLVMDKFTRVEGDYKAIIHNPSPLIPPIFGADEFGWCSEWNAAMTKLTGWHRDEVINKMLLGEVFDSTNASCLVKNKDAFVSLCILINSALAGDETEKAPFSFFDRNGKYIECLLSVNRKVNADGVI 867          
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYA_ORYSI (Phytochrome A OS=Oryza sativa subsp. indica GN=PHYA PE=2 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 2.585e-61
Identity = 118/244 (48.36%), Postives = 163/244 (66.80%), Query Frame = 2
Query:    2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFGS---FCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKV 724
            VRL+ETAT PI  VDS+G +NGWN KVAELTGL   EA+G+ ++  VV E S   V+ ++  AL GKE+K V+ +++    ++    V ++VNAC SRD  ++V GVCFV QD+T  K++MDKF R++GDY+AII + +PLIPPIF +DE   CSEWN AM K+TGW R EVI KML  E+F S    C +K +D      IL+   + G  TE  PF FF+R G+++E  L+ +R+ +A G +
Sbjct:  625 VRLMETATVPILAVDSNGLVNGWNQKVAELTGLRVDEAIGRHILT-VVEESSVPVVQRMLYLALQGKEEKEVKFEVKTHGSKRDDGPVILVVNACASRDLHDHVVGVCFVAQDMTVHKLVMDKFTRVEGDYKAIIHNPSPLIPPIFGADEFGWCSEWNAAMTKLTGWHRDEVINKMLLGEVFDSTNASCLVKNKDAFVSLCILINSALAGDETEKAPFSFFDRNGKYIECLLSVNRKVNADGVI 867          
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYA_CUCPE (Phytochrome A OS=Cucurbita pepo GN=PHYA PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.409e-61
Identity = 122/244 (50.00%), Postives = 158/244 (64.75%), Query Frame = 2
Query:    2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFG---SFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKV 724
            VRLIETAT PI  VD  G INGWN K+AELTGLP  +A+GK L+  +V + S   V  ++  AL G+E++NV+ +++      +   + ++VNAC SRD + NV GV FV QDIT +K++MDKF RL+GDY+AI+Q+ NPLIPPIF SDE   CSEWN AM K+TGW R EVI KML  E+FG   S CR+K Q+      I+L   + GQ  E   FGF  R G +VE  L  ++  D  G V
Sbjct:  621 VRLIETATVPILAVDLDGLINGWNTKIAELTGLPVDKAIGKHLLT-LVEDSSVEVVRKMLFLALQGQEEQNVQFEIKTHGSHIEVGSISLVVNACASRDLRENVVGVFFVAQDITGQKMVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDEFGWCSEWNPAMAKLTGWSREEVIDKMLLGEVFGVHKSCCRLKNQEAFVNLGIVLNNAMCGQDPEKASFGFLARNGMYVECLLCVNKILDKDGAV 863          
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYA_SORBI (Phytochrome a OS=Sorghum bicolor GN=PHYA PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.675e-60
Identity = 115/244 (47.13%), Postives = 163/244 (66.80%), Query Frame = 2
Query:    2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFGS---FCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKV 724
            VRL+ETAT PI  VD +G +NGWN KVAEL+GL   EA+G+ ++  +V + S   V+ ++  AL GKE+K V  +L+    ++    V ++VNAC SRD  ++V GVCFV QD+T  K++MDKF R++GDY+AII + NPLIPPIF +D+   CSEWN AM K+TGW R EVI KML  E+F S    C +K +D   +  I++   + G+  EN PFG F+R G+++E  L+ +R+ +A G V
Sbjct:  625 VRLMETATVPILAVDGNGLVNGWNQKVAELSGLRVDEAIGRHILT-LVEDSSVSIVQRMLYLALQGKEEKEVRFELKTHGSKRDDGPVILVVNACASRDLHDHVVGVCFVAQDMTVHKLVMDKFTRVEGDYKAIIHNPNPLIPPIFGADQFGWCSEWNVAMTKLTGWHRDEVIDKMLLGEVFDSSNASCLLKSKDDFVRLCIIINSALAGEEAENAPFGLFDRNGKYIECLLSVNRKVNADGVV 867          
The following BLAST results are available for this feature:
BLAST of FC869292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PHYA_SOLTU3.854e-6550.00Phytochrome A OS=Solanum tuberosum GN=PHYA PE=2 SV... [more]
PHYA_SOYBN3.607e-6349.59Phytochrome A OS=Glycine max GN=PHYA PE=2 SV=1[more]
PHYA1_TOBAC6.152e-6349.59Phytochrome A1 OS=Nicotiana tabacum GN=PHYA1 PE=3 ... [more]
PHYA_POPTM1.790e-6248.36Phytochrome A OS=Populus tremuloides GN=PHYA PE=2 ... [more]
PHYC_ORYSJ2.338e-6248.58Phytochrome C OS=Oryza sativa subsp. japonica GN=P... [more]
PHYC_ORYSI2.338e-6248.58Phytochrome C OS=Oryza sativa subsp. indica GN=PHY... [more]
PHYA_ORYSJ2.585e-6148.36Phytochrome A OS=Oryza sativa subsp. japonica GN=P... [more]
PHYA_ORYSI2.585e-6148.36Phytochrome A OS=Oryza sativa subsp. indica GN=PHY... [more]
PHYA_CUCPE4.409e-6150.00Phytochrome A OS=Cucurbita pepo GN=PHYA PE=2 SV=1[more]
PHYA_SORBI1.675e-6047.13Phytochrome a OS=Sorghum bicolor GN=PHYA PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31010F05EF AbioticL1 Citrus clementina cDNA clone C31010F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869292 ID=FC869292; Name=FC869292; organism=Citrus clementina; type=EST; length=743bp
GGTTAGATTGATTGAGACAGCCACAGCTCCAATTTTTGGAGTTGACTCAT
CTGGTACCATCAATGGGTGGAATGCAAAAGTTGCCGAATTGACAGGATTA
CCAGCTAGTGAAGCCATGGGGAAGTCTCTAATTGATGAAGTAGTTCATGA
GGAATCTCAGGGAGCTGTTGAAAATCTTATCTGCCGAGCTCTGCTTGGCA
AGGAGGACAAAAATGTTGAATTAAAACTGAGAAAGTTTGAGCTTCAAAAG
CAACACTCAGTTGTTTATATTCTAGTTAATGCCTGCACAAGTAGGGATTA
CAAGAATAATGTCAAAGGGGTGTGCTTCGTGGGTCAAGACATCACACATG
AGAAGGTTCTTATGGATAAATTCATCCGCTTGCAAGGGGATTATGAGGCT
ATCATACAAAGTGTTAATCCATTGATTCCACCAATATTTGCTTCTGATGA
GAATGCATGCTGTTCTGAATGGAATACTGCCATGGAAAAGGTGACTGGTT
GGATGAGACATGAGGTGATAGGTAAAATGCTTCCGAGGGAAATCTTCGGA
AGTTTCTGTCGAATGAAAGGTCAGGATATGCTCACTAAATTTATGATTCT
GTTGTATCAAGGAATTACTGGTCAAGGTACAGAGAACTTCCCTTTTGGAT
TTTTCAATAGACAAGGACAGTTTGTTGAGGTGACCTTAACTGCAAGTAGA
AGGACTGATGCTGANGGGAAAGTATTGGCTGCTTCTGCTTCAT
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