FC869292
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYA_SOLTU (Phytochrome A OS=Solanum tuberosum GN=PHYA PE=2 SV=2) HSP 1 Score: 248.054 bits (632), Expect = 3.854e-65 Identity = 122/244 (50.00%), Postives = 167/244 (68.44%), Query Frame = 2 Query: 2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFG---SFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKV 724 VRLIETA+ PIF VD G +NGWN KVAELTGLP EA+GK L+ +V + S V ++ AL G+E++NVE +++ + S + ++VNAC S+D +++V GVCF+ QDIT +K +MDKF R++GDY AIIQ+ +PLIPPIF +D+ CSEWN+AM +TGW R +V+ KML E+FG + CR+K Q+ F ++L ITGQ +E PFGFF R G++VE L S+R D G V Sbjct: 622 VRLIETASVPIFAVDVDGQVNGWNTKVAELTGLPVDEAIGKHLLT-LVEDSSVDTVNKMLELALQGQEERNVEFEIKTHGPSRDSSPISLIVNACASKDVRDSVVGVCFIAQDITGQKSIMDKFTRIEGDYRAIIQNPHPLIPPIFGTDQFGWCSEWNSAMTMLTGWRRDDVMDKMLLGEVFGTQAACCRLKNQEAFVNFGVILNNAITGQESEKIPFGFFARYGKYVECLLCVSKRLDKEGAV 864
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYA_SOYBN (Phytochrome A OS=Glycine max GN=PHYA PE=2 SV=1) HSP 1 Score: 241.506 bits (615), Expect = 3.607e-63 Identity = 121/244 (49.59%), Postives = 163/244 (66.80%), Query Frame = 2 Query: 2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFG---SFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKV 724 VRL TAT PI VD G +NGWN K+AELTGLP EA GK L+ +V + S V+ ++ ALLG+E+KNV+ +++ + + ++VN C SRD ++NV GVCFV DIT +K +MDKFIR++GDY+AI+Q+ NPLIPPIF +DE C EWN AM K+TGW R EV+ KML EIFG + CR+K Q+ ++L + +TG TE PFGFF R G++VE L+ S++ D G V Sbjct: 629 VRLDYTATVPILAVDVDGLVNGWNIKIAELTGLPIGEATGKHLLT-LVEDSSTDRVKKMLNLALLGEEEKNVQFEIKTLGSKMDSGPISLVVNRCASRDLRDNVVGVCFVAHDITAQKNVMDKFIRIEGDYKAIVQNRNPLIPPIFGTDEFGWCCEWNPAMMKLTGWKREEVMDKMLLGEIFGTQMAACRLKNQEAFVNLGVVLNKAMTGSETEKVPFGFFARNGKYVECLLSVSKKLDVEGLV 871
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYA1_TOBAC (Phytochrome A1 OS=Nicotiana tabacum GN=PHYA1 PE=3 SV=1) HSP 1 Score: 240.736 bits (613), Expect = 6.152e-63 Identity = 121/244 (49.59%), Postives = 162/244 (66.39%), Query Frame = 2 Query: 2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFG---SFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKV 724 VRLIETA+ PIF VD G +NGWN K+AELTGLP EA+G L+ +V + S V ++ AL GKE++NVE +++ S + ++VNAC SRD ++V GVCF+ QDIT +K +MDKF R++GDY AIIQ+ +PLIPPIF +D+ CSEWN+AM K+TGW R +VI KML E+FG + CR+K Q+ F ++L +TGQ FGFF R G++VE L S+R D G V Sbjct: 622 VRLIETASVPIFAVDVDGQLNGWNTKIAELTGLPVDEAIGNHLLT-LVEDSSVDTVSKMLELALQGKEERNVEFEIKTHGPSGDSSPISLIVNACASRDVGDSVVGVCFIAQDITGQKNIMDKFTRIEGDYRAIIQNPHPLIPPIFGTDQFGWCSEWNSAMTKLTGWRRDDVIDKMLLGEVFGTQAACCRLKNQEAFVNFGVVLNNAMTGQECAKISFGFFARNGKYVECLLCVSKRLDREGAV 864
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYA_POPTM (Phytochrome A OS=Populus tremuloides GN=PHYA PE=2 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 1.790e-62 Identity = 118/244 (48.36%), Postives = 164/244 (67.21%), Query Frame = 2 Query: 2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFG---SFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKV 724 VRLIETAT PI VD G +NGWN K++ELTGL +A+GK L+ +V + S V+ ++ AL GKE++N++ +++ + + + ++VNAC SRD NV GVCFVGQDIT +K++MDKF R++GDY+AI+Q+ NPLIPPIF +DE CSEWN AM +TGW R EV+ KML E+FG + CR+K Q+ ++L +TGQ +E FGFF R G++VE L S++ D G V Sbjct: 622 VRLIETATVPILAVDVDGLVNGWNTKISELTGLLVDKAIGKHLLT-LVEDSSVDIVKRMLFLALQGKEEQNIQFEIKTHGSKSECGPICLVVNACASRDLHENVVGVCFVGQDITGQKMVMDKFTRIEGDYKAIVQNRNPLIPPIFGTDEFGWCSEWNPAMTNLTGWKREEVLDKMLLGEVFGLNMACCRLKNQEAFVNLGVVLNTAMTGQESEKVSFGFFARTGKYVECLLCVSKKLDREGAV 864
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYC_ORYSJ (Phytochrome C OS=Oryza sativa subsp. japonica GN=PHYC PE=2 SV=1) HSP 1 Score: 238.81 bits (608), Expect = 2.338e-62 Identity = 120/247 (48.58%), Postives = 168/247 (68.02%), Query Frame = 2 Query: 2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFGSF---CRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKVLAA 733 VRLIETATAPI VD +G+INGWN K AELTGLP EA+GK L+D V+ ++S V+ ++ AL G E++N+++KL+ F Q+ + V ++VNAC SRD V GVCFV QD+T + ++MDK+ R+QGDY AI+++ + LIPPIF ++ C EWN AM+K+TG R + + K+L E+F CR+K LTK IL+ I+GQ E FGFFN G+++E +TA++RTDA GK+ A Sbjct: 625 VRLIETATAPILAVDITGSINGWNNKAAELTGLPVMEAIGKPLVDLVI-DDSVEVVKQILNSALQGIEEQNLQIKLKTFNHQENNGPVILMVNACCSRDLSEKVVGVCFVAQDMTGQNIIMDKYTRIQGDYVAIVKNPSELIPPIFMINDLGSCLEWNEAMQKITGIKREDAVDKLLIGEVFTHHEYGCRVKDHGTLTKLSILMNTVISGQDPEKLLFGFFNTDGKYIESLMTATKRTDAEGKITGA 870
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYC_ORYSI (Phytochrome C OS=Oryza sativa subsp. indica GN=PHYC PE=2 SV=2) HSP 1 Score: 238.81 bits (608), Expect = 2.338e-62 Identity = 120/247 (48.58%), Postives = 168/247 (68.02%), Query Frame = 2 Query: 2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFGSF---CRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKVLAA 733 VRLIETATAPI VD +G+INGWN K AELTGLP EA+GK L+D V+ ++S V+ ++ AL G E++N+++KL+ F Q+ + V ++VNAC SRD V GVCFV QD+T + ++MDK+ R+QGDY AI+++ + LIPPIF ++ C EWN AM+K+TG R + + K+L E+F CR+K LTK IL+ I+GQ E FGFFN G+++E +TA++RTDA GK+ A Sbjct: 625 VRLIETATAPILAVDITGSINGWNNKAAELTGLPVMEAIGKPLVDLVI-DDSVEVVKQILNSALQGIEEQNLQIKLKTFNHQENNGPVILMVNACCSRDLSEKVVGVCFVAQDMTGQNIIMDKYTRIQGDYVAIVKNPSELIPPIFMINDLGSCLEWNEAMQKITGIKREDAVDKLLIGEVFTHHEYGCRVKDHGTLTKLSILMNTVISGQDPEKLLFGFFNTDGKYIESLMTATKRTDAEGKITGA 870
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYA_ORYSJ (Phytochrome A OS=Oryza sativa subsp. japonica GN=PHYA PE=2 SV=1) HSP 1 Score: 235.343 bits (599), Expect = 2.585e-61 Identity = 118/244 (48.36%), Postives = 163/244 (66.80%), Query Frame = 2 Query: 2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFGS---FCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKV 724 VRL+ETAT PI VDS+G +NGWN KVAELTGL EA+G+ ++ VV E S V+ ++ AL GKE+K V+ +++ ++ V ++VNAC SRD ++V GVCFV QD+T K++MDKF R++GDY+AII + +PLIPPIF +DE CSEWN AM K+TGW R EVI KML E+F S C +K +D IL+ + G TE PF FF+R G+++E L+ +R+ +A G + Sbjct: 625 VRLMETATVPILAVDSNGLVNGWNQKVAELTGLRVDEAIGRHILT-VVEESSVPVVQRMLYLALQGKEEKEVKFEVKTHGSKRDDGPVILVVNACASRDLHDHVVGVCFVAQDMTVHKLVMDKFTRVEGDYKAIIHNPSPLIPPIFGADEFGWCSEWNAAMTKLTGWHRDEVINKMLLGEVFDSTNASCLVKNKDAFVSLCILINSALAGDETEKAPFSFFDRNGKYIECLLSVNRKVNADGVI 867
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYA_ORYSI (Phytochrome A OS=Oryza sativa subsp. indica GN=PHYA PE=2 SV=2) HSP 1 Score: 235.343 bits (599), Expect = 2.585e-61 Identity = 118/244 (48.36%), Postives = 163/244 (66.80%), Query Frame = 2 Query: 2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFGS---FCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKV 724 VRL+ETAT PI VDS+G +NGWN KVAELTGL EA+G+ ++ VV E S V+ ++ AL GKE+K V+ +++ ++ V ++VNAC SRD ++V GVCFV QD+T K++MDKF R++GDY+AII + +PLIPPIF +DE CSEWN AM K+TGW R EVI KML E+F S C +K +D IL+ + G TE PF FF+R G+++E L+ +R+ +A G + Sbjct: 625 VRLMETATVPILAVDSNGLVNGWNQKVAELTGLRVDEAIGRHILT-VVEESSVPVVQRMLYLALQGKEEKEVKFEVKTHGSKRDDGPVILVVNACASRDLHDHVVGVCFVAQDMTVHKLVMDKFTRVEGDYKAIIHNPSPLIPPIFGADEFGWCSEWNAAMTKLTGWHRDEVINKMLLGEVFDSTNASCLVKNKDAFVSLCILINSALAGDETEKAPFSFFDRNGKYIECLLSVNRKVNADGVI 867
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYA_CUCPE (Phytochrome A OS=Cucurbita pepo GN=PHYA PE=2 SV=1) HSP 1 Score: 234.572 bits (597), Expect = 4.409e-61 Identity = 122/244 (50.00%), Postives = 158/244 (64.75%), Query Frame = 2 Query: 2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFG---SFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKV 724 VRLIETAT PI VD G INGWN K+AELTGLP +A+GK L+ +V + S V ++ AL G+E++NV+ +++ + + ++VNAC SRD + NV GV FV QDIT +K++MDKF RL+GDY+AI+Q+ NPLIPPIF SDE CSEWN AM K+TGW R EVI KML E+FG S CR+K Q+ I+L + GQ E FGF R G +VE L ++ D G V Sbjct: 621 VRLIETATVPILAVDLDGLINGWNTKIAELTGLPVDKAIGKHLLT-LVEDSSVEVVRKMLFLALQGQEEQNVQFEIKTHGSHIEVGSISLVVNACASRDLRENVVGVFFVAQDITGQKMVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDEFGWCSEWNPAMAKLTGWSREEVIDKMLLGEVFGVHKSCCRLKNQEAFVNLGIVLNNAMCGQDPEKASFGFLARNGMYVECLLCVNKILDKDGAV 863
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYA_SORBI (Phytochrome a OS=Sorghum bicolor GN=PHYA PE=2 SV=1) HSP 1 Score: 232.646 bits (592), Expect = 1.675e-60 Identity = 115/244 (47.13%), Postives = 163/244 (66.80%), Query Frame = 2 Query: 2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFGS---FCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKV 724 VRL+ETAT PI VD +G +NGWN KVAEL+GL EA+G+ ++ +V + S V+ ++ AL GKE+K V +L+ ++ V ++VNAC SRD ++V GVCFV QD+T K++MDKF R++GDY+AII + NPLIPPIF +D+ CSEWN AM K+TGW R EVI KML E+F S C +K +D + I++ + G+ EN PFG F+R G+++E L+ +R+ +A G V Sbjct: 625 VRLMETATVPILAVDGNGLVNGWNQKVAELSGLRVDEAIGRHILT-LVEDSSVSIVQRMLYLALQGKEEKEVRFELKTHGSKRDDGPVILVVNACASRDLHDHVVGVCFVAQDMTVHKLVMDKFTRVEGDYKAIIHNPNPLIPPIFGADQFGWCSEWNVAMTKLTGWHRDEVIDKMLLGEVFDSSNASCLLKSKDDFVRLCIIINSALAGEEAENAPFGLFDRNGKYIECLLSVNRKVNADGVV 867 The following BLAST results are available for this feature:
BLAST of FC869292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 38
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC869292 ID=FC869292; Name=FC869292; organism=Citrus clementina; type=EST; length=743bpback to top |