FC869292

Overview
NameFC869292
Unique NameFC869292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14383 contig Ccv1_Contig14383:512..1254. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYC_SORBI (Phytochrome C OS=Sorghum bicolor GN=PHYC PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.188e-60
Identity = 119/247 (48.18%), Postives = 167/247 (67.61%), Query Frame = 2
Query:    2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFGSF---CRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKVLAA 733
            VRLIETATAP+  VD +G INGWN K AELTGLP  EA+G+ LID VV +  +  V+ ++  AL G E++N+E+KL+ F  Q+ +  + ++VN+C SRD    V GVCFVGQD+T +K++MDK+ R+QGDY AI+++ + LIPPIF  ++   C EWN AM+K+TG  R +VI K+L  E+F      CR+K    LTK  IL+   I+GQ  E   FGFF+  G+++E  LT ++R +A GK+  A
Sbjct:  623 VRLIETATAPVLAVDIAGNINGWNNKAAELTGLPVMEAIGRPLIDLVVVDSIE-VVKRILDSALQGIEEQNLEIKLKAFHEQECNGPIILMVNSCCSRDLSEKVIGVCFVGQDLTTQKMIMDKYTRIQGDYVAIVKNPSELIPPIFMINDLGSCLEWNKAMQKITGIQREDVIDKLLIGEVFTLHDYGCRVKDHATLTKLSILMNAVISGQDPEKLLFGFFDTDGKYIESLLTVNKRINAEGKITGA 868          
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYA_PETCR (Phytochrome A OS=Petroselinum crispum GN=PHYA PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.188e-60
Identity = 115/244 (47.13%), Postives = 160/244 (65.57%), Query Frame = 2
Query:    2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFG---SFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKV 724
            VRLIETAT PIF VD+   +NGWN K+AELTGLP  +AMGK L+  +V + S G V  L+  AL GKE++ +  + + +  ++    + ++VNAC +R   +NV GVCFV QD+T +K +MDKF R+QGDY+AI+Q+ NPLIPPIF +DE   CSEWN AM +++GW R +V+ KML  EIFG   S C +K ++      ++L   +TGQ +E   F FF   G++VE  L AS++    G V
Sbjct:  627 VRLIETATVPIFAVDADEIVNGWNTKIAELTGLPVDQAMGKHLLT-LVEDSSVGTVVFLLALALQGKEEQGIPFEFKTYGSREDSVPITVVVNACATRGLHDNVVGVCFVAQDVTSQKTIMDKFTRIQGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNQAMTELSGWRREDVMNKMLLGEIFGIQTSCCHLKSKEAFVNLGVVLNNALTGQISEKICFSFFATDGKYVECLLCASKKLHGEGTV 869          
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYA3_AVESA (Phytochrome A type 3 OS=Avena sativa GN=PHYA3 PE=1 SV=3)

HSP 1 Score: 231.106 bits (588), Expect = 4.875e-60
Identity = 113/244 (46.31%), Postives = 162/244 (66.39%), Query Frame = 2
Query:    2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFGS---FCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKV 724
            VRL+ETAT PI  VD +G +NGWN K AELTGL   +A+G+ ++  +V + S   V+ ++  AL GKE+K V  +++    ++    V ++VNAC SRD  ++V GVCFV QD+T  K++MDKF R++GDY+AII + NPLIPPIF +DE   CSEWN AM K+TGW R EV+ KML  E+F S    C +K +D      +L+   + G+ TE  PFGFF+R G+++E  L+A+R+ +  G +
Sbjct:  623 VRLMETATVPILAVDGNGLVNGWNQKAAELTGLRVDDAIGRHILT-LVEDSSVPVVQRMLYLALQGKEEKEVRFEVKTHGPKRDDGPVILVVNACASRDLHDHVVGVCFVAQDMTVHKLVMDKFTRVEGDYKAIIHNPNPLIPPIFGADEFGWCSEWNAAMTKLTGWNRDEVLDKMLLGEVFDSSNASCPLKNRDAFVSLCVLINSALAGEETEKAPFGFFDRSGKYIECLLSANRKENEGGLI 865          
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYA4_AVESA (Phytochrome A type 4 OS=Avena sativa GN=PHYA4 PE=1 SV=3)

HSP 1 Score: 230.335 bits (586), Expect = 8.315e-60
Identity = 113/244 (46.31%), Postives = 162/244 (66.39%), Query Frame = 2
Query:    2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFGS---FCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKV 724
            VRL+ETAT PI  VD +G +NGWN K AELTGL   +A+G+ ++  +V E S   V+ ++  AL GKE+K V  +++    ++    V ++VNAC SRD  ++V GVCFV QD+T  K++MDKF R++GDY+AII + NPLIPPIF +DE   CSEWN AM K+TGW R EV+ KML  E+F S    C +K ++      +L+   + G+ TE  PFGFF+R G+++E  L+A+R+ +  G +
Sbjct:  623 VRLMETATVPILAVDGNGLVNGWNQKAAELTGLRVDDAIGRHILT-LVEESSVPVVQRMLYLALQGKEEKEVRFEVKTHGPRRDDGPVILVVNACASRDLHDHVVGVCFVAQDMTVHKLVMDKFTRVEGDYKAIIHNPNPLIPPIFGADEFGWCSEWNAAMTKLTGWNRDEVLDKMLLGEVFDSSNASCPLKNKNAFVSLCVLINSALAGEETEKAPFGFFDRSGKYIECLLSANRKENEGGLI 865          
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYA_ARATH (Phytochrome A OS=Arabidopsis thaliana GN=PHYA PE=1 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.418e-59
Identity = 118/244 (48.36%), Postives = 156/244 (63.93%), Query Frame = 2
Query:    2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFG---SFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKV 724
            VRLIETAT PI  VDS G +NGWN K+AELTGL   EA+GK  +  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD   NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   C+EWN AM K+TG  R EVI KML  E+FG   S CR+K Q+      I+L   +T Q  E   F FF R G++VE  L  S++ D  G V
Sbjct:  623 VRLIETATVPILAVDSDGLVNGWNTKIAELTGLSVDEAIGKHFLT-LVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRDLHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCTEWNPAMSKLTGLKREEVIDKMLLGEVFGTQKSCCRLKNQEAFVNLGIVLNNAVTSQDPEKVSFAFFTRGGKYVECLLCVSKKLDREGVV 865          
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYC_ARATH (Phytochrome C OS=Arabidopsis thaliana GN=PHYC PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 9.193e-59
Identity = 116/245 (47.35%), Postives = 165/245 (67.35%), Query Frame = 2
Query:    2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFGS---FCRMKGQDMLTKFMILLYQGITGQ-GTENFPFGFFNRQGQFVEVTLTASRRTDAXGKV 724
            VRLI+TA  PIF VD+SG INGWN+K AE+TGL   +A+GK + D +V ++S   V+N++  AL G E++  E+++R F  +++ S V ++VN C SRD  NNV GVCF+GQD+T +K L + + R++GDY  I+ S + LIPPIF ++EN  CSEWN AM+K++G  R EV+ K+L  E+F +    C +K  D LTK  I     I+GQ   E   FGF++R G F+E  L+A++RTD  GKV
Sbjct:  609 VRLIDTAAVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSD-LVEDDSVETVKNMLALALEGSEERGAEIRIRAFGPKRKSSPVELVVNTCCSRDMTNNVLGVCFIGQDVTGQKTLTENYSRVKGDYARIMWSPSTLIPPIFITNENGVCSEWNNAMQKLSGIKREEVVNKILLGEVFTTDDYGCCLKDHDTLTKLRIGFNAVISGQKNIEKLLFGFYHRDGSFIEALLSANKRTDIEGKV 852          
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYA1_MAIZE (Phytochrome A OS=Zea mays GN=PHYA1 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.568e-58
Identity = 112/244 (45.90%), Postives = 161/244 (65.98%), Query Frame = 2
Query:    2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFGS---FCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKV 724
            VRL+ETAT PI  VD +G +NGWN KVAEL+GL   EA+G+ ++  +V + S   V+ ++  AL G+E+K V  +L+    ++    V ++VNAC SRD  ++V GVCFV QD+T  K++MDKF R++GDY+AII + NPLIPPIF +D+   CSEWN AM K+TGW R EV+ KML  E+F S    C +K +D   +  I++   + G+  E   FGFF+R  ++VE  L+ +R+ +A G V
Sbjct:  625 VRLMETATVPILAVDGNGLVNGWNQKVAELSGLRVDEAIGRHILT-LVEDSSVSLVQRMLYLALQGREEKEVRFELKTHGSKRDDGPVILVVNACASRDLHDHVVGVCFVAQDMTVHKLVMDKFTRVEGDYKAIIHNPNPLIPPIFGADQFGWCSEWNAAMTKLTGWHRDEVVDKMLLGEVFNSSNASCLLKSKDAFVRLCIVINSALAGEEAEKASFGFFDRNEKYVECLLSVNRKVNADGVV 867          
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHY1_CERPU (Light-sensor Protein kinase OS=Ceratodon purpureus GN=PHY1 PE=3 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 2.436e-35
Identity = 76/160 (47.50%), Postives = 106/160 (66.25%), Query Frame = 2
Query:    5 RLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAM 484
            R++ETA API  VDS G IN WNAK+A++TGLP  EAM  SL  ++V +ES   VE L+  AL G+E++NVE+KL+ F  Q     V ++VNAC SRD  + V GV FVGQD+T +++ MD+F R+QG  +  +Q  +PL+ P F  DE     + N+A+
Sbjct:  615 RVLETAAAPILAVDSRGMINAWNAKIAQVTGLPVEEAMHCSLTKDLVLDESVVVVERLLSLALQGEEEQNVEIKLKTFGTQTTERAVILIVNACCSRDASDFVVGVFFVGQDVTEQRMFMDRFTRIQGGEKTTVQDPHPLMRPSFDGDEFGRTFKRNSAL 774          
The following BLAST results are available for this feature:
BLAST of FC869292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PHYC_SORBI2.188e-6048.18Phytochrome C OS=Sorghum bicolor GN=PHYC PE=2 SV=1[more]
PHYA_PETCR2.188e-6047.13Phytochrome A OS=Petroselinum crispum GN=PHYA PE=2... [more]
PHYA3_AVESA4.875e-6046.31Phytochrome A type 3 OS=Avena sativa GN=PHYA3 PE=1... [more]
PHYA4_AVESA8.315e-6046.31Phytochrome A type 4 OS=Avena sativa GN=PHYA4 PE=1... [more]
PHYA_ARATH1.418e-5948.36Phytochrome A OS=Arabidopsis thaliana GN=PHYA PE=1... [more]
PHYC_ARATH9.193e-5947.35Phytochrome C OS=Arabidopsis thaliana GN=PHYC PE=1... [more]
PHYA1_MAIZE1.568e-5845.90Phytochrome A OS=Zea mays GN=PHYA1 PE=3 SV=1[more]
PHY1_CERPU2.436e-3547.50Light-sensor Protein kinase OS=Ceratodon purpureus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31010F05EF AbioticL1 Citrus clementina cDNA clone C31010F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869292 ID=FC869292; Name=FC869292; organism=Citrus clementina; type=EST; length=743bp
GGTTAGATTGATTGAGACAGCCACAGCTCCAATTTTTGGAGTTGACTCAT
CTGGTACCATCAATGGGTGGAATGCAAAAGTTGCCGAATTGACAGGATTA
CCAGCTAGTGAAGCCATGGGGAAGTCTCTAATTGATGAAGTAGTTCATGA
GGAATCTCAGGGAGCTGTTGAAAATCTTATCTGCCGAGCTCTGCTTGGCA
AGGAGGACAAAAATGTTGAATTAAAACTGAGAAAGTTTGAGCTTCAAAAG
CAACACTCAGTTGTTTATATTCTAGTTAATGCCTGCACAAGTAGGGATTA
CAAGAATAATGTCAAAGGGGTGTGCTTCGTGGGTCAAGACATCACACATG
AGAAGGTTCTTATGGATAAATTCATCCGCTTGCAAGGGGATTATGAGGCT
ATCATACAAAGTGTTAATCCATTGATTCCACCAATATTTGCTTCTGATGA
GAATGCATGCTGTTCTGAATGGAATACTGCCATGGAAAAGGTGACTGGTT
GGATGAGACATGAGGTGATAGGTAAAATGCTTCCGAGGGAAATCTTCGGA
AGTTTCTGTCGAATGAAAGGTCAGGATATGCTCACTAAATTTATGATTCT
GTTGTATCAAGGAATTACTGGTCAAGGTACAGAGAACTTCCCTTTTGGAT
TTTTCAATAGACAAGGACAGTTTGTTGAGGTGACCTTAACTGCAAGTAGA
AGGACTGATGCTGANGGGAAAGTATTGGCTGCTTCTGCTTCAT
back to top