FC869292
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYC_SORBI (Phytochrome C OS=Sorghum bicolor GN=PHYC PE=2 SV=1) HSP 1 Score: 232.261 bits (591), Expect = 2.188e-60 Identity = 119/247 (48.18%), Postives = 167/247 (67.61%), Query Frame = 2 Query: 2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFGSF---CRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKVLAA 733 VRLIETATAP+ VD +G INGWN K AELTGLP EA+G+ LID VV + + V+ ++ AL G E++N+E+KL+ F Q+ + + ++VN+C SRD V GVCFVGQD+T +K++MDK+ R+QGDY AI+++ + LIPPIF ++ C EWN AM+K+TG R +VI K+L E+F CR+K LTK IL+ I+GQ E FGFF+ G+++E LT ++R +A GK+ A Sbjct: 623 VRLIETATAPVLAVDIAGNINGWNNKAAELTGLPVMEAIGRPLIDLVVVDSIE-VVKRILDSALQGIEEQNLEIKLKAFHEQECNGPIILMVNSCCSRDLSEKVIGVCFVGQDLTTQKMIMDKYTRIQGDYVAIVKNPSELIPPIFMINDLGSCLEWNKAMQKITGIQREDVIDKLLIGEVFTLHDYGCRVKDHATLTKLSILMNAVISGQDPEKLLFGFFDTDGKYIESLLTVNKRINAEGKITGA 868
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYA_PETCR (Phytochrome A OS=Petroselinum crispum GN=PHYA PE=2 SV=1) HSP 1 Score: 232.261 bits (591), Expect = 2.188e-60 Identity = 115/244 (47.13%), Postives = 160/244 (65.57%), Query Frame = 2 Query: 2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFG---SFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKV 724 VRLIETAT PIF VD+ +NGWN K+AELTGLP +AMGK L+ +V + S G V L+ AL GKE++ + + + + ++ + ++VNAC +R +NV GVCFV QD+T +K +MDKF R+QGDY+AI+Q+ NPLIPPIF +DE CSEWN AM +++GW R +V+ KML EIFG S C +K ++ ++L +TGQ +E F FF G++VE L AS++ G V Sbjct: 627 VRLIETATVPIFAVDADEIVNGWNTKIAELTGLPVDQAMGKHLLT-LVEDSSVGTVVFLLALALQGKEEQGIPFEFKTYGSREDSVPITVVVNACATRGLHDNVVGVCFVAQDVTSQKTIMDKFTRIQGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNQAMTELSGWRREDVMNKMLLGEIFGIQTSCCHLKSKEAFVNLGVVLNNALTGQISEKICFSFFATDGKYVECLLCASKKLHGEGTV 869
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYA3_AVESA (Phytochrome A type 3 OS=Avena sativa GN=PHYA3 PE=1 SV=3) HSP 1 Score: 231.106 bits (588), Expect = 4.875e-60 Identity = 113/244 (46.31%), Postives = 162/244 (66.39%), Query Frame = 2 Query: 2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFGS---FCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKV 724 VRL+ETAT PI VD +G +NGWN K AELTGL +A+G+ ++ +V + S V+ ++ AL GKE+K V +++ ++ V ++VNAC SRD ++V GVCFV QD+T K++MDKF R++GDY+AII + NPLIPPIF +DE CSEWN AM K+TGW R EV+ KML E+F S C +K +D +L+ + G+ TE PFGFF+R G+++E L+A+R+ + G + Sbjct: 623 VRLMETATVPILAVDGNGLVNGWNQKAAELTGLRVDDAIGRHILT-LVEDSSVPVVQRMLYLALQGKEEKEVRFEVKTHGPKRDDGPVILVVNACASRDLHDHVVGVCFVAQDMTVHKLVMDKFTRVEGDYKAIIHNPNPLIPPIFGADEFGWCSEWNAAMTKLTGWNRDEVLDKMLLGEVFDSSNASCPLKNRDAFVSLCVLINSALAGEETEKAPFGFFDRSGKYIECLLSANRKENEGGLI 865
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYA4_AVESA (Phytochrome A type 4 OS=Avena sativa GN=PHYA4 PE=1 SV=3) HSP 1 Score: 230.335 bits (586), Expect = 8.315e-60 Identity = 113/244 (46.31%), Postives = 162/244 (66.39%), Query Frame = 2 Query: 2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFGS---FCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKV 724 VRL+ETAT PI VD +G +NGWN K AELTGL +A+G+ ++ +V E S V+ ++ AL GKE+K V +++ ++ V ++VNAC SRD ++V GVCFV QD+T K++MDKF R++GDY+AII + NPLIPPIF +DE CSEWN AM K+TGW R EV+ KML E+F S C +K ++ +L+ + G+ TE PFGFF+R G+++E L+A+R+ + G + Sbjct: 623 VRLMETATVPILAVDGNGLVNGWNQKAAELTGLRVDDAIGRHILT-LVEESSVPVVQRMLYLALQGKEEKEVRFEVKTHGPRRDDGPVILVVNACASRDLHDHVVGVCFVAQDMTVHKLVMDKFTRVEGDYKAIIHNPNPLIPPIFGADEFGWCSEWNAAMTKLTGWNRDEVLDKMLLGEVFDSSNASCPLKNKNAFVSLCVLINSALAGEETEKAPFGFFDRSGKYIECLLSANRKENEGGLI 865
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYA_ARATH (Phytochrome A OS=Arabidopsis thaliana GN=PHYA PE=1 SV=2) HSP 1 Score: 229.565 bits (584), Expect = 1.418e-59 Identity = 118/244 (48.36%), Postives = 156/244 (63.93%), Query Frame = 2 Query: 2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFG---SFCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKV 724 VRLIETAT PI VDS G +NGWN K+AELTGL EA+GK + +V + S V+ ++ AL G E++NV+ +++ + + ++VNAC SRD NV GVCFV D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE C+EWN AM K+TG R EVI KML E+FG S CR+K Q+ I+L +T Q E F FF R G++VE L S++ D G V Sbjct: 623 VRLIETATVPILAVDSDGLVNGWNTKIAELTGLSVDEAIGKHFLT-LVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRDLHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCTEWNPAMSKLTGLKREEVIDKMLLGEVFGTQKSCCRLKNQEAFVNLGIVLNNAVTSQDPEKVSFAFFTRGGKYVECLLCVSKKLDREGVV 865
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYC_ARATH (Phytochrome C OS=Arabidopsis thaliana GN=PHYC PE=1 SV=1) HSP 1 Score: 226.868 bits (577), Expect = 9.193e-59 Identity = 116/245 (47.35%), Postives = 165/245 (67.35%), Query Frame = 2 Query: 2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFGS---FCRMKGQDMLTKFMILLYQGITGQ-GTENFPFGFFNRQGQFVEVTLTASRRTDAXGKV 724 VRLI+TA PIF VD+SG INGWN+K AE+TGL +A+GK + D +V ++S V+N++ AL G E++ E+++R F +++ S V ++VN C SRD NNV GVCF+GQD+T +K L + + R++GDY I+ S + LIPPIF ++EN CSEWN AM+K++G R EV+ K+L E+F + C +K D LTK I I+GQ E FGF++R G F+E L+A++RTD GKV Sbjct: 609 VRLIDTAAVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSD-LVEDDSVETVKNMLALALEGSEERGAEIRIRAFGPKRKSSPVELVVNTCCSRDMTNNVLGVCFIGQDVTGQKTLTENYSRVKGDYARIMWSPSTLIPPIFITNENGVCSEWNNAMQKLSGIKREEVVNKILLGEVFTTDDYGCCLKDHDTLTKLRIGFNAVISGQKNIEKLLFGFYHRDGSFIEALLSANKRTDIEGKV 852
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHYA1_MAIZE (Phytochrome A OS=Zea mays GN=PHYA1 PE=3 SV=1) HSP 1 Score: 226.098 bits (575), Expect = 1.568e-58 Identity = 112/244 (45.90%), Postives = 161/244 (65.98%), Query Frame = 2 Query: 2 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAMEKVTGWMRHEVIGKMLPREIFGS---FCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVTLTASRRTDAXGKV 724 VRL+ETAT PI VD +G +NGWN KVAEL+GL EA+G+ ++ +V + S V+ ++ AL G+E+K V +L+ ++ V ++VNAC SRD ++V GVCFV QD+T K++MDKF R++GDY+AII + NPLIPPIF +D+ CSEWN AM K+TGW R EV+ KML E+F S C +K +D + I++ + G+ E FGFF+R ++VE L+ +R+ +A G V Sbjct: 625 VRLMETATVPILAVDGNGLVNGWNQKVAELSGLRVDEAIGRHILT-LVEDSSVSLVQRMLYLALQGREEKEVRFELKTHGSKRDDGPVILVVNACASRDLHDHVVGVCFVAQDMTVHKLVMDKFTRVEGDYKAIIHNPNPLIPPIFGADQFGWCSEWNAAMTKLTGWHRDEVVDKMLLGEVFNSSNASCLLKSKDAFVRLCIVINSALAGEEAEKASFGFFDRNEKYVECLLSVNRKVNADGVV 867
BLAST of FC869292 vs. ExPASy Swiss-Prot
Match: PHY1_CERPU (Light-sensor Protein kinase OS=Ceratodon purpureus GN=PHY1 PE=3 SV=3) HSP 1 Score: 149.058 bits (375), Expect = 2.436e-35 Identity = 76/160 (47.50%), Postives = 106/160 (66.25%), Query Frame = 2 Query: 5 RLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGKEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNTAM 484 R++ETA API VDS G IN WNAK+A++TGLP EAM SL ++V +ES VE L+ AL G+E++NVE+KL+ F Q V ++VNAC SRD + V GV FVGQD+T +++ MD+F R+QG + +Q +PL+ P F DE + N+A+ Sbjct: 615 RVLETAAAPILAVDSRGMINAWNAKIAQVTGLPVEEAMHCSLTKDLVLDESVVVVERLLSLALQGEEEQNVEIKLKTFGTQTTERAVILIVNACCSRDASDFVVGVFFVGQDVTEQRMFMDRFTRIQGGEKTTVQDPHPLMRPSFDGDEFGRTFKRNSAL 774 The following BLAST results are available for this feature:
BLAST of FC869292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 38
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC869292 ID=FC869292; Name=FC869292; organism=Citrus clementina; type=EST; length=743bpback to top |