FC869293

Overview
NameFC869293
Unique NameFC869293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_PROMM (Dihydrodipicolinate synthase OS=Prochlorococcus marinus (strain MIT 9313) GN=dapA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.071e-27
Identity = 65/159 (40.88%), Postives = 88/159 (55.35%), Query Frame = 2
Query:  263 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTI---IYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 730
            RL+TA+ TP+  DG  DL     L    +  G++G++V GTTGE   +SW E   L+G      G  VKV+  TGSNST EAI AT Q  AVG   AL + PYY K   EGL +HF ++    P +   +YN+P RTG  + P  +  + + PN+   K
Sbjct:   14 RLLTAMVTPFDADGCVDLALAGRLARYLVDEGSDGLVVCGTTGESPTLSWQEQHQLLGVVRQAVGPGVKVLAGTGSNSTAEAIEATTQAAAVGADGALVVVPYYNKPPQEGLEAHFRAIAQAAPELPLMLYNIPGRTGCSLAPATVARLMECPNVVSFK 172          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_PROM3 (Dihydrodipicolinate synthase OS=Prochlorococcus marinus (strain MIT 9303) GN=dapA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.071e-27
Identity = 65/159 (40.88%), Postives = 88/159 (55.35%), Query Frame = 2
Query:  263 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTI---IYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 730
            RL+TA+ TP+  DG  DL     L    +  G++G++V GTTGE   +SW E   L+G      G  VKV+  TGSNST EAI AT Q  AVG   AL + PYY K   EGL +HF ++    P +   +YN+P RTG  + P  +  + + PN+   K
Sbjct:   14 RLLTAMVTPFDADGCVDLALAGRLARYLVDEGSDGLVVCGTTGESPTLSWQEQHQLLGVVRQAVGPGVKVLAGTGSNSTAEAIEATTQAAAVGADGALVVVPYYNKPPQEGLEAHFRAIAQAAPELPLMLYNIPGRTGCSLAPATVARLMECPNVVSFK 172          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_LEPBP (Dihydrodipicolinate synthase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=dapA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.387e-27
Identity = 61/156 (39.10%), Postives = 93/156 (59.62%), Query Frame = 2
Query:  272 TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSV--LSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            TA+ TP+   G+ D ++Y  ++  QI +G  G++  GTTGE   +S++EH  LI  TV      ++VI  TGSNST+EAI  TE   A G+   L +NPYY K + EG+  HF ++  +S  P ++YN+P RT  ++ P  +  +A  P +A +KE
Sbjct:    7 TAVITPFR-QGKIDYDSYFKILENQIRSGVAGVVPCGTTGESPTLSYEEHKELIQKTVQVVSGKIQVIAGTGSNSTKEAIELTESACADGVDGILSVNPYYNKPTQEGMFQHFTAIANVSSKPVMLYNIPGRTNVNLLPETVSRLAAHPKIAAIKE 161          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_LEPBA (Dihydrodipicolinate synthase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=dapA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.387e-27
Identity = 61/156 (39.10%), Postives = 93/156 (59.62%), Query Frame = 2
Query:  272 TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSV--LSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            TA+ TP+   G+ D ++Y  ++  QI +G  G++  GTTGE   +S++EH  LI  TV      ++VI  TGSNST+EAI  TE   A G+   L +NPYY K + EG+  HF ++  +S  P ++YN+P RT  ++ P  +  +A  P +A +KE
Sbjct:    7 TAVITPFR-QGKIDYDSYFKILENQIRSGVAGVVPCGTTGESPTLSYEEHKELIQKTVQVVSGKIQVIAGTGSNSTKEAIELTESACADGVDGILSVNPYYNKPTQEGMFQHFTAIANVSSKPVMLYNIPGRTNVNLLPETVSRLAAHPKIAAIKE 161          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_SYNR3 (Dihydrodipicolinate synthase OS=Synechococcus sp. (strain RCC307) GN=dapA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.117e-27
Identity = 61/159 (38.36%), Postives = 90/159 (56.60%), Query Frame = 2
Query:  263 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTI---IYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 730
            R++TA+ TP+  DG  DL     L    + +G++G++V GTTGE   +SWDE + LI   ++  G  V V+  TGSNST EA+ AT +  A+G H AL + PYY +   EGL +HF +V +  P +   +YN+P RTG  + P     +    N+   K
Sbjct:   11 RVVTAMVTPFAADGSLDLPLAARLAQHLVAHGSDGLLVCGTTGESPTLSWDEQLALIKTVLDAVGEKVPVLAGTGSNSTAEAVEATREAAALGAHGALVVVPYYNRPPQEGLEAHFRAVAAAAPELPLMLYNIPGRTGCSLHPATTARLLDCDNVVAYK 169          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_SYNSC (Dihydrodipicolinate synthase OS=Synechococcus sp. (strain CC9605) GN=dapA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.317e-27
Identity = 60/159 (37.74%), Postives = 89/159 (55.97%), Query Frame = 2
Query:  263 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTI---IYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 730
            R++TA+ TP+   G  DL    +L    +  G++G++V GTTGE   +SWDE + L+    +  G+  KV+  TGSNST EA+ AT++  A G   AL + PYY K   EGL +HF ++    P +   +YN+P RTG  I P  +  +   PN+   K
Sbjct:   14 RVVTAMVTPFDASGAVDLSVAANLARHLVEQGSDGLLVCGTTGESPTLSWDEQLQLLQAVRDAVGSDAKVLAGTGSNSTAEAVEATKEAAAAGADGALVVVPYYNKPPQEGLEAHFRAIAEAAPELPLMLYNIPGRTGCSIAPATVARLMDCPNVVSFK 172          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_BORPE (Dihydrodipicolinate synthase OS=Bordetella pertussis GN=dapA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.944e-27
Identity = 62/157 (39.49%), Postives = 87/157 (55.41%), Query Frame = 2
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            + A+ TP  PDG  D +AY  L++  +  G +G++V GTTGE   +S +EH  LI   V      + VI   G+NST EAIH      AVG  A L + PYY K + EG+  HF +V      PT++YNVP RT  D+    +  +A+ P + G+KE
Sbjct:    7 LVALVTPMQPDGSLDYDAYRSLIDWHVAEGTDGLVVVGTTGESPSVSMEEHAELIRVAVEHAAGRIPVIAGVGANSTDEAIHLARHAKAVGAQAGLSVVPYYNKPNQEGIYRHFRAVAEAVDLPTVLYNVPGRTVADMSNDTVLRLAEVPGIIGIKE 163          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_ANASP (Dihydrodipicolinate synthase OS=Anabaena sp. (strain PCC 7120) GN=dapA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.070e-27
Identity = 60/159 (37.74%), Postives = 88/159 (55.35%), Query Frame = 2
Query:  266 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            ++TA+ TP+  DG  +     +L    + NG + ++V GTTGE   +SWDE   L    +       KVI   GSNST+EAI AT++   +G+H  L + PYY K    GL  HF ++       P ++YNVP RTGQ++ P  +  +A+  N+ GVKE
Sbjct:    7 VLTAMITPFKADGSVNYAVAAELAANLVDNGTDTLVVCGTTGESPTLSWDEEYNLFVEVLQTVAGKAKVIAGCGSNSTKEAIAATQKAAKIGVHGTLQVVPYYNKPPQAGLYQHFQAIAQACPELPLLLYNVPGRTGQNLSPETVVRLAEIDNIVGVKE 165          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_SYMTH (Dihydrodipicolinate synthase OS=Symbiobacterium thermophilum GN=dapA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.185e-26
Identity = 64/160 (40.00%), Postives = 90/160 (56.25%), Query Frame = 2
Query:  263 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQS-PNLAGVKE 733
            RL+TA+ TP  PDG  D +   +L    +  G+EG++V GTTGE   +S +E + L    V+  G  V VI  TGSN+T E+I  + +    G+H  L + PYY K   EGL  HF +V      P I+YNVPSRT  ++ P     +A+  PN+ G+KE
Sbjct:    6 RLLTAMVTPMTPDGAVDYQRAGELAKHLVAAGSEGLVVSGTTGESPTLSHEEKLRLFETVVDAVGGQVSVIAGTGSNNTAESIRFSREAARTGVHGLLLVTPYYNKPPQEGLYRHFRAVAEAVDLPCILYNVPSRTSVNMLPATTLRLARDVPNIVGIKE 165          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_SYNY3 (Dihydrodipicolinate synthase OS=Synechocystis sp. (strain PCC 6803) GN=dapA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.547e-26
Identity = 58/159 (36.48%), Postives = 92/159 (57.86%), Query Frame = 2
Query:  266 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTI---IYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            ++TA+ TP+  DG  D    + L +  I +G++G++V GTTGE   +SW+E   L        G    VI  TGSN TREA+ AT+    +G+  +L + PYY K   EGL++HF ++ +  P +   +YN+P RTGQ + P  ++ +A+  N+  +KE
Sbjct:   13 VLTAMVTPFNADGGVDYGVAEKLADHLITHGSDGLVVCGTTGESPTLSWEEEHELFRVVKQTVGDRGSVIAGTGSNCTREAMEATQIAAKLGVDGSLQVVPYYNKPPQEGLLAHFQAIANCAPELPLMLYNIPGRTGQSLAPETVYRLAEVENIVAIKE 171          
The following BLAST results are available for this feature:
BLAST of FC869293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 490
Match NameE-valueIdentityDescription
DAPA_PROMM1.071e-2740.88Dihydrodipicolinate synthase OS=Prochlorococcus ma... [more]
DAPA_PROM31.071e-2740.88Dihydrodipicolinate synthase OS=Prochlorococcus ma... [more]
DAPA_LEPBP2.387e-2739.10Dihydrodipicolinate synthase OS=Leptospira biflexa... [more]
DAPA_LEPBA2.387e-2739.10Dihydrodipicolinate synthase OS=Leptospira biflexa... [more]
DAPA_SYNR33.117e-2738.36Dihydrodipicolinate synthase OS=Synechococcus sp. ... [more]
DAPA_SYNSC5.317e-2737.74Dihydrodipicolinate synthase OS=Synechococcus sp. ... [more]
DAPA_BORPE6.944e-2739.49Dihydrodipicolinate synthase OS=Bordetella pertuss... [more]
DAPA_ANASP9.070e-2737.74Dihydrodipicolinate synthase OS=Anabaena sp. (stra... [more]
DAPA_SYMTH1.185e-2640.00Dihydrodipicolinate synthase OS=Symbiobacterium th... [more]
DAPA_SYNY31.547e-2636.48Dihydrodipicolinate synthase OS=Synechocystis sp. ... [more]

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Properties
Property NameValue
Genbank descriptionC31010F06EF AbioticL1 Citrus clementina cDNA clone C31010F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869293 ID=FC869293; Name=FC869293; organism=Citrus clementina; type=EST; length=735bp
TGGCCGGAGAAAGTGTGTGCACTGACCTCCCGAGCCTTCGGAGACTTGAC
TGCCTAAAACTGAGAAGAAAAGGAAAGAGGAAATGGTTCACTTGAATGCG
TGCGAGTTGAACCTCAGTAACTGCGGACCCGTCTCTGTCTCTTGCACCGG
GAAAAACCGGAAATGGAGACCCCCTCAAGCAGCTATAATTCCCAATTACC
ATCTTCCAATGCGTAGTTTTGAGGTTAAAAACAGGACATCTGCAGAGGAT
ATAAAGGCACTTAGATTGATAACTGCCATCAAAACGCCATATCTACCAGA
TGGCAGATTTGATCTTGAAGCTTATGATGACCTAGTGAATATGCAGATCG
TAAATGGTGCTGAAGGTATGATTGTTGGTGGCACAACTGGTGAAGGCCAA
CTCATGAGCTGGGATGAACATATAATGCTTATTGGTCACACAGTGAACTG
CTTTGGCGCCTCAGTAAAGGTAATTGGAAATACTGGAAGCAACTCCACCA
GGGAAGCAATTCATGCTACTGAACAAGGTTTTGCAGTTGGTATGCATGCA
GCACTACACATAAATCCTTACTATGGCAAAACTTCCTTGGAGGGCTTGAT
TTCTCACTTTGATAGTGTGTTGTCCATGGGCCCCACCATTATATACAATG
TGCCGTCACGAACTGGTCAAGATATTCCTCCGCGTGTGATTCACACAATG
GCACAGAGTCCGAACCTGGCTGGTGTCAAGGAATG
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