FC869293

Overview
NameFC869293
Unique NameFC869293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_NOSP7 (Dihydrodipicolinate synthase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dapA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.547e-26
Identity = 59/159 (37.11%), Postives = 89/159 (55.97%), Query Frame = 2
Query:  266 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            ++TA+ TP+  DG  D     +L      NG + +++ GTTGE   +SWDE   L    +       KVI   GSNST+EAI AT++   +G+H +L + PYY K    GL +HF ++       P ++YNVP RTGQ++ P  +  +A+  N+ G+KE
Sbjct:    7 VLTAMITPFKADGSVDYGVAAELAVHLANNGTDTLVMCGTTGESPTLSWDEEYQLFVEVLQSVAGKAKVIAGCGSNSTKEAIAATQKASKIGVHGSLQVVPYYNKPPQAGLEAHFQAIAQACPDLPLLLYNVPGRTGQNLQPETVARLAEVSNIVGIKE 165          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_MARAV (Dihydrodipicolinate synthase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=dapA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.547e-26
Identity = 62/158 (39.24%), Postives = 85/158 (53.80%), Query Frame = 2
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGP---TIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            + A+ TP  P+G    E  D LV+  I NG  G++  GTTGE   +  +EHI  IGH +      + VI  TG NSTREAI  T +   +G  A L + PYY K + EGL  HF ++    P    I+YNVP RT  D+    +  +A  PN+ G+K+
Sbjct:    6 LVALVTPMYPNGDIHWEDLDKLVDFHIENGTHGIVAVGTTGESATLDPEEHIRTIGHIIKRVNGRIPVIAGTGGNSTREAIELTTEAHKLGADACLLVVPYYNKPTQEGLYQHFKAIAEAVPGMSQILYNVPGRTACDMLNETVVRLADIPNIVGIKD 163          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_MICAN (Dihydrodipicolinate synthase OS=Microcystis aeruginosa (strain NIES-843) GN=dapA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.021e-26
Identity = 61/160 (38.12%), Postives = 90/160 (56.25%), Query Frame = 2
Query:  263 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            R+ITA+ TP+  +G+ +    + L +  + +G++G++V GTTGE   +SW E   L            KVI  TGSNST EAI AT+Q   +G+  +L + PYY K   EGL  HF ++       P ++YN+P RTGQ++ P  I  +A   N+  VKE
Sbjct:    9 RVITAMVTPFTVEGQVNYALVEKLADYLVTHGSDGIVVCGTTGESPTLSWQEEYELFSIVKKAVNGRGKVIAGTGSNSTSEAIEATQQAAKLGLDGSLQVVPYYNKPPQEGLYEHFLTIAKACPDLPVMLYNIPGRTGQNMTPETIIKLAAVDNIVAVKE 168          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_SYNJA (Dihydrodipicolinate synthase OS=Synechococcus sp. (strain JA-3-3Ab) GN=dapA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.447e-26
Identity = 56/159 (35.22%), Postives = 90/159 (56.60%), Query Frame = 2
Query:  263 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            R++TA+ TP+ P+G  + E    L +  + +G++G++V GTTGE   ++W E   L     +      KVI  TGSNSTREAI AT++   +G+  +L + PYY K +  GL  HF ++      P ++YN+P RTG  + P  +  +A+   +  +KE
Sbjct:    5 RVLTAMVTPFTPEGELNYEEAARLADYLVTHGSDGLVVCGTTGESPTLTWQEEYELFRVVRDAVAGRAKVIAGTGSNSTREAIEATKKAAQLGLDGSLQVVPYYNKPTQAGLYQHFKAIAQASDLPIMLYNIPGRTGVSLQPETVAKLAELETIVAIKE 163          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_SYNS9 (Dihydrodipicolinate synthase OS=Synechococcus sp. (strain CC9902) GN=dapA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.879e-26
Identity = 60/159 (37.74%), Postives = 87/159 (54.72%), Query Frame = 2
Query:  263 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTI---IYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 730
            R++TA+ TP+   G  D +    L    +  G++G++V GTTGE   +SWDE + L+       G+S +V+  TGSNST EA+ AT +  AVG   AL + PYY K   EGL  HF ++    PT+   +YN+P RTG  I    +  +   PN+   K
Sbjct:   14 RIVTAMVTPFDSSGAVDFQLAARLARHLVEQGSDGLLVCGTTGESPTLSWDEQLKLLEAVREAVGSSAQVLAGTGSNSTSEAVKATREAAAVGADGALVVVPYYNKPPQEGLEVHFRAIAEAAPTLPLMLYNIPGRTGCHIEAETVACLMDCPNIVSFK 172          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_PROM4 (Dihydrodipicolinate synthase OS=Prochlorococcus marinus (strain MIT 9211) GN=dapA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.879e-26
Identity = 62/159 (38.99%), Postives = 87/159 (54.72%), Query Frame = 2
Query:  263 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTI---IYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 730
            RL+TA+ TP+  DG+ D      L    +  G++G++V GTTGE   +SW E   L+    +  G +VKV+  TGSNST EAI AT +   +G   AL + PYY K   EGL  HF S+ +  P +   +YN+P RTG  I P  +  +   PN+   K
Sbjct:   14 RLLTAMVTPFDSDGKVDYAIAGRLARYLVDEGSDGIVVCGTTGESPTLSWSEQHQLLETVKSSVGKAVKVLAGTGSNSTAEAIEATVKAAELGADGALVVVPYYNKPPQEGLEIHFRSIANAAPDLPLMLYNIPGRTGSSIHPATVKRLMNCPNIISYK 172          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_NITMU (Dihydrodipicolinate synthase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=dapA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.678e-26
Identity = 63/157 (40.13%), Postives = 88/157 (56.05%), Query Frame = 2
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            + AI TP   +G  DLE +  L++  +  G +G++V GTTGE   + ++EH +LI   V      V VI  TG+NSTREAI  +      G  A+L + PYY K + EGL  HF +V      P I+YNVP RT  DI    +  +AQ PN+ G+K+
Sbjct:   10 LVAIVTPMHENGELDLERFQSLIDFHVTEGTDGIVVVGTTGESPTVDFEEHHLLIKTAVEQAAGRVPVIAGTGANSTREAIDLSIYAKNAGADASLSVVPYYNKPTQEGLYQHFRAVAEAVDIPQILYNVPGRTVADIANDTVLRLAQIPNIVGIKD 166          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_SYNP6 (Dihydrodipicolinate synthase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dapA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.003e-25
Identity = 56/159 (35.22%), Postives = 89/159 (55.97%), Query Frame = 2
Query:  263 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTI---IYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 730
            R+ITA+ TP+  +G+   +    L    +  G++G+++ GTTGE   ++W+E + L        G    VI  TGSN TREAI AT+    +G++ +L + PYY K   EGL +HF ++    P +   +YN+P RTGQ + P  +  +A  PN+  +K
Sbjct:    9 RVITAMITPFNAEGQVAYDIAQSLAVHLVEQGSDGLVICGTTGESPTLTWEEELQLFRAVKEAVGDRAAVIAGTGSNCTREAIAATQSAATLGLNGSLQVVPYYNKPPQEGLYAHFRAIAEACPDLPLMLYNIPGRTGQSLQPETVARLASLPNVVAIK 167          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_SYNE7 (Dihydrodipicolinate synthase OS=Synechococcus elongatus (strain PCC 7942) GN=dapA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.003e-25
Identity = 56/159 (35.22%), Postives = 89/159 (55.97%), Query Frame = 2
Query:  263 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTI---IYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 730
            R+ITA+ TP+  +G+   +    L    +  G++G+++ GTTGE   ++W+E + L        G    VI  TGSN TREAI AT+    +G++ +L + PYY K   EGL +HF ++    P +   +YN+P RTGQ + P  +  +A  PN+  +K
Sbjct:    9 RVITAMITPFNAEGQVAYDIAQSLAVHLVEQGSDGLVICGTTGESPTLTWEEELQLFRAVKEAVGDRAAVIAGTGSNCTREAIAATQSAATLGLNGSLQVVPYYNKPPQEGLYAHFRAIAEACPDLPLMLYNIPGRTGQSLQPETVARLASLPNVVAIK 167          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_PROMT (Dihydrodipicolinate synthase OS=Prochlorococcus marinus (strain NATL2A) GN=dapA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.003e-25
Identity = 61/159 (38.36%), Postives = 88/159 (55.35%), Query Frame = 2
Query:  263 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTI---IYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 730
            RL+TA+ TP+  +G+ D     DL N  +  G++G++V GTTGE   +SW E   L+    N  G+  KV+  TGSNST EAI AT++    G   AL + PYY K   EGL  HF ++ +  P +   +YN+P RTG  I P ++  +    N+   K
Sbjct:   14 RLLTAMVTPFDDEGKVDYGLAADLANYLVDQGSDGIVVCGTTGESPTLSWQEQQKLLETVRNSLGSRAKVLAGTGSNSTSEAIEATKEAANSGADGALVVVPYYNKPPQEGLEVHFRAIANAAPKLPLMLYNIPGRTGCSISPSIVSKLMDCSNVVSFK 172          
The following BLAST results are available for this feature:
BLAST of FC869293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 490
Match NameE-valueIdentityDescription
DAPA_NOSP71.547e-2637.11Dihydrodipicolinate synthase OS=Nostoc punctiforme... [more]
DAPA_MARAV1.547e-2639.24Dihydrodipicolinate synthase OS=Marinobacter aquae... [more]
DAPA_MICAN2.021e-2638.13Dihydrodipicolinate synthase OS=Microcystis aerugi... [more]
DAPA_SYNJA3.447e-2635.22Dihydrodipicolinate synthase OS=Synechococcus sp. ... [more]
DAPA_SYNS95.879e-2637.74Dihydrodipicolinate synthase OS=Synechococcus sp. ... [more]
DAPA_PROM45.879e-2638.99Dihydrodipicolinate synthase OS=Prochlorococcus ma... [more]
DAPA_NITMU7.678e-2640.13Dihydrodipicolinate synthase OS=Nitrosospira multi... [more]
DAPA_SYNP61.003e-2535.22Dihydrodipicolinate synthase OS=Synechococcus sp. ... [more]
DAPA_SYNE71.003e-2535.22Dihydrodipicolinate synthase OS=Synechococcus elon... [more]
DAPA_PROMT1.003e-2538.36Dihydrodipicolinate synthase OS=Prochlorococcus ma... [more]

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Properties
Property NameValue
Genbank descriptionC31010F06EF AbioticL1 Citrus clementina cDNA clone C31010F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869293 ID=FC869293; Name=FC869293; organism=Citrus clementina; type=EST; length=735bp
TGGCCGGAGAAAGTGTGTGCACTGACCTCCCGAGCCTTCGGAGACTTGAC
TGCCTAAAACTGAGAAGAAAAGGAAAGAGGAAATGGTTCACTTGAATGCG
TGCGAGTTGAACCTCAGTAACTGCGGACCCGTCTCTGTCTCTTGCACCGG
GAAAAACCGGAAATGGAGACCCCCTCAAGCAGCTATAATTCCCAATTACC
ATCTTCCAATGCGTAGTTTTGAGGTTAAAAACAGGACATCTGCAGAGGAT
ATAAAGGCACTTAGATTGATAACTGCCATCAAAACGCCATATCTACCAGA
TGGCAGATTTGATCTTGAAGCTTATGATGACCTAGTGAATATGCAGATCG
TAAATGGTGCTGAAGGTATGATTGTTGGTGGCACAACTGGTGAAGGCCAA
CTCATGAGCTGGGATGAACATATAATGCTTATTGGTCACACAGTGAACTG
CTTTGGCGCCTCAGTAAAGGTAATTGGAAATACTGGAAGCAACTCCACCA
GGGAAGCAATTCATGCTACTGAACAAGGTTTTGCAGTTGGTATGCATGCA
GCACTACACATAAATCCTTACTATGGCAAAACTTCCTTGGAGGGCTTGAT
TTCTCACTTTGATAGTGTGTTGTCCATGGGCCCCACCATTATATACAATG
TGCCGTCACGAACTGGTCAAGATATTCCTCCGCGTGTGATTCACACAATG
GCACAGAGTCCGAACCTGGCTGGTGTCAAGGAATG
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