FC869293

Overview
NameFC869293
Unique NameFC869293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_BIFLO (Dihydrodipicolinate synthase OS=Bifidobacterium longum GN=dapA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.455e-18
Identity = 51/159 (32.08%), Postives = 79/159 (49.69%), Query Frame = 2
Query:  263 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSV--LSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            R++ A+ TP   DG  D  A   L    + +GA+G++V GTTGE  +   DE + L+          V VI   GSN T   +   EQ    G  A L + PYY + S +G++ H+ +V   +  P I+Y+VP RTG  +       +A+  ++  VK+
Sbjct:   16 RILPAMVTPMKSDGSVDFAAAQKLAKYLVADGADGLVVNGTTGESPVTHMDEKVELVRAVKEV--VDVPVISGAGSNDTAHTVRMVEQTQEAGADAVLVVMPYYSRPSQDGIVGHYKAVDESAEKPIIVYDVPGRTGLKVKVGTYDRLAELEHVKAVKD 172          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_BIFLD (Dihydrodipicolinate synthase OS=Bifidobacterium longum (strain DJO10A) GN=dapA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.455e-18
Identity = 51/159 (32.08%), Postives = 79/159 (49.69%), Query Frame = 2
Query:  263 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSV--LSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            R++ A+ TP   DG  D  A   L    + +GA+G++V GTTGE  +   DE + L+          V VI   GSN T   +   EQ    G  A L + PYY + S +G++ H+ +V   +  P I+Y+VP RTG  +       +A+  ++  VK+
Sbjct:   16 RILPAMVTPMKSDGSVDFAAAQKLAKYLVADGADGLVVNGTTGESPVTHMDEKVELVRAVKEV--VDVPVISGAGSNDTAHTVRMVEQTQEAGADAVLVVMPYYSRPSQDGIVGHYKAVDESAEKPIIVYDVPGRTGLKVKVGTYDRLAELEHVKAVKD 172          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_STAS1 (Dihydrodipicolinate synthase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=dapA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.893e-18
Identity = 49/155 (31.61%), Postives = 85/155 (54.84%), Query Frame = 2
Query:  275 AIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            A+ TP+  +   D +A    V   + N A+ ++V GTT E   ++ +E   ++   VN     V VI  TG+N+T+++I A+ +   +G  A + I PYY KT+  GLI+HF ++      P ++YNVPSRT   I    + T++++  +  +K+
Sbjct:   11 ALATPFTHN-EVDFDALRRHVKYLLDNNAKSIVVNGTTAENPTLTDEEKDQILEVVVNVVDGRVPVIAGTGTNNTQKSIQASVRAREIGADAIMLITPYYNKTNQRGLIAHFTTIADAVKLPVVLYNVPSRTNMTIDAETVETLSENEYIVALKD 164          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_NOVAD (Dihydrodipicolinate synthase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=dapA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.893e-18
Identity = 58/159 (36.48%), Postives = 82/159 (51.57%), Query Frame = 2
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQ--SPNLAGVKE 733
            I A+ TP+  DG FD +A+  LV+ QI NG+  ++  GTTGE   +S  EH  +I   V      V VI   GSN T  A+         G  AAL + PYY + S  G+I+HF  +      P ++YNVP RT  DI P  +  +A+     + G+K+
Sbjct:    6 IPALVTPFR-DGAFDEKAFRRLVDWQIENGSSALVPCGTTGEASTLSNAEHHRVIEVCVEQAAGRVPVIAGCGSNDTMNALLHMNFSKKCGAQAALCVAPYYNRPSQAGIIAHFSYLAEHNDLPIVLYNVPGRTVTDILPETVCELAKRYPDKIIGIKD 163          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_HELHP (Dihydrodipicolinate synthase OS=Helicobacter hepaticus GN=dapA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.893e-18
Identity = 57/159 (35.85%), Postives = 83/159 (52.20%), Query Frame = 2
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN-CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQS-PNLAGVKE 733
            ++A+ TP++ + + D E Y+ L+  QI  G +  +  GTTGE   +S  EH+  I   V  C G+ VKV+   GSNST EA          G  A L + PYY K + EGL  H+ +V +    P ++YNVPSRTG  I       +  +  N+  +KE
Sbjct:    6 MSALITPFI-NHKVDFETYETLIKRQITYGMDACVPVGTTGESATLSHKEHMECIEVAVAVCRGSKVKVLAGAGSNSTSEAKELALFAQKCGADALLCVTPYYNKPTQEGLFEHYKAVANAVEIPVMLYNVPSRTGVSIEIETAKRLRDACKNIYAIKE 163          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_DIAST (Dihydrodipicolinate synthase OS=Diaphorobacter sp. (strain TPSY) GN=dapA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.893e-18
Identity = 53/158 (33.54%), Postives = 81/158 (51.27%), Query Frame = 2
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVL-SMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            I A+ TP   DG  D  A   L++  I  G + + V GTTGE   ++ +EH  +I  +V      V ++   G+NST EAI        VG  + L + PYY K + EG   HF ++  ++G  P ++YNVP R+  D+    +  + Q P + G+KE
Sbjct:   12 IVALVTPMHDDGSVDYPALRKLIDWHIAEGTDCIGVVGTTGESPTVNVEEHCEIIRVSVEQAAKRVPIMAGCGANSTAEAIELARFAKKVGADSQLQVVPYYNKPTQEGQYRHFKAIAEAVGDLPMVLYNVPGRSVADMQHETVLRLTQVPGIVGIKE 169          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_ACISJ (Dihydrodipicolinate synthase OS=Acidovorax sp. (strain JS42) GN=dapA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.893e-18
Identity = 53/158 (33.54%), Postives = 81/158 (51.27%), Query Frame = 2
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVL-SMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            I A+ TP   DG  D  A   L++  I  G + + V GTTGE   ++ +EH  +I  +V      V ++   G+NST EAI        VG  + L + PYY K + EG   HF ++  ++G  P ++YNVP R+  D+    +  + Q P + G+KE
Sbjct:   12 IVALVTPMHDDGSVDYPALRKLIDWHIAEGTDCIGVVGTTGESPTVNVEEHCEIIRVSVEQAAKRVPIMAGCGANSTAEAIELARFAKKVGADSQLQVVPYYNKPTQEGQYRHFKAIAEAVGDLPMVLYNVPGRSVADMQHETVLRLTQVPGIVGIKE 169          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_THEAB (Dihydrodipicolinate synthase OS=Thermosipho africanus (strain TCF52B) GN=dapA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.696e-18
Identity = 57/157 (36.31%), Postives = 80/157 (50.96%), Query Frame = 2
Query:  272 TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQS-PNLAGVKE 733
            TAI TP+  +G+ D+E+Y+ L+N QI N    +IV GTTGE   +S DE  +LI       G   KVI   GSN     I   +     G    L + PYY K +  GL  ++  +        I+YNVPSRTG +I P  ++ +A    N+  +KE
Sbjct:    7 TAIVTPF-KEGKLDIESYEKLLNFQINNQINAIIVLGTTGEAPNISLDEREILIKKAKEVSGNKAKVIVGAGSNGINHTIELIKNAEKNGADGLLIVTPYYNKPTQNGLYEYYKYISEHTDLEIIVYNVPSRTGINILPETVYKIASDCKNVKALKE 162          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_LACH4 (Dihydrodipicolinate synthase OS=Lactobacillus helveticus (strain DPC 4571) GN=dapA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.696e-18
Identity = 53/159 (33.33%), Postives = 82/159 (51.57%), Query Frame = 2
Query:  266 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAV-GMHAALHINPYYGKTSLEGLISHFDSVLS--MGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            L+TAI TP+  + + D ++   L N  I  G  G ++GGTTGE   ++ DE I L             VI  TGSN+T E I  T +   + G+  AL + P Y K +   +++HF +V      P +IYN+P RTG  +    +  ++Q  N+ G+K+
Sbjct:    9 LLTAIVTPFDENKKIDFDSLKKLTNYLIDQGCNGFVIGGTTGETPTLTHDEKIELYKQFGQIVNGRAVVIAGTGSNNTAETIKFTNEVAEIDGIDYALVVVPPYNKPNQRSMVAHFTAVNDNVKMPFLIYNIPGRTGVRMEKETVVQLSQLDNIKGIKQ 167          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_ANAMF (Dihydrodipicolinate synthase OS=Anaplasma marginale (strain Florida) GN=dapA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.696e-18
Identity = 53/163 (32.52%), Postives = 84/163 (51.53%), Query Frame = 2
Query:  251 IKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSV--LSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            +K   + TA+ TP+  D   D  A    V+ QI +G  G++  GTTGE   ++++E+  ++   +      + VI   GS+ T E I       + G  AAL + PYY + S EG+  HF +V   +  P ++YNVP RT  DI    I  +A+ P + G+K+
Sbjct:    1 MKLSGVFTALATPFRDDLSLDERALASFVDWQISSGISGIVPCGTTGESATLNFEEYCTVVRLCIETARGRILVIAGAGSHCTTETISRALFVQSAGADAALIVVPYYNRPSDEGVYQHFRAVHDATNIPIVLYNVPQRTAIDISNDTIRRIAELPRVVGIKD 163          
The following BLAST results are available for this feature:
BLAST of FC869293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 490
Match NameE-valueIdentityDescription
DAPA_BIFLO3.455e-1832.08Dihydrodipicolinate synthase OS=Bifidobacterium lo... [more]
DAPA_BIFLD3.455e-1832.08Dihydrodipicolinate synthase OS=Bifidobacterium lo... [more]
DAPA_STAS15.893e-1831.61Dihydrodipicolinate synthase OS=Staphylococcus sap... [more]
DAPA_NOVAD5.893e-1836.48Dihydrodipicolinate synthase OS=Novosphingobium ar... [more]
DAPA_HELHP5.893e-1835.85Dihydrodipicolinate synthase OS=Helicobacter hepat... [more]
DAPA_DIAST5.893e-1833.54Dihydrodipicolinate synthase OS=Diaphorobacter sp.... [more]
DAPA_ACISJ5.893e-1833.54Dihydrodipicolinate synthase OS=Acidovorax sp. (st... [more]
DAPA_THEAB7.696e-1836.31Dihydrodipicolinate synthase OS=Thermosipho africa... [more]
DAPA_LACH47.696e-1833.33Dihydrodipicolinate synthase OS=Lactobacillus helv... [more]
DAPA_ANAMF7.696e-1832.52Dihydrodipicolinate synthase OS=Anaplasma marginal... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31010F06EF AbioticL1 Citrus clementina cDNA clone C31010F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869293 ID=FC869293; Name=FC869293; organism=Citrus clementina; type=EST; length=735bp
TGGCCGGAGAAAGTGTGTGCACTGACCTCCCGAGCCTTCGGAGACTTGAC
TGCCTAAAACTGAGAAGAAAAGGAAAGAGGAAATGGTTCACTTGAATGCG
TGCGAGTTGAACCTCAGTAACTGCGGACCCGTCTCTGTCTCTTGCACCGG
GAAAAACCGGAAATGGAGACCCCCTCAAGCAGCTATAATTCCCAATTACC
ATCTTCCAATGCGTAGTTTTGAGGTTAAAAACAGGACATCTGCAGAGGAT
ATAAAGGCACTTAGATTGATAACTGCCATCAAAACGCCATATCTACCAGA
TGGCAGATTTGATCTTGAAGCTTATGATGACCTAGTGAATATGCAGATCG
TAAATGGTGCTGAAGGTATGATTGTTGGTGGCACAACTGGTGAAGGCCAA
CTCATGAGCTGGGATGAACATATAATGCTTATTGGTCACACAGTGAACTG
CTTTGGCGCCTCAGTAAAGGTAATTGGAAATACTGGAAGCAACTCCACCA
GGGAAGCAATTCATGCTACTGAACAAGGTTTTGCAGTTGGTATGCATGCA
GCACTACACATAAATCCTTACTATGGCAAAACTTCCTTGGAGGGCTTGAT
TTCTCACTTTGATAGTGTGTTGTCCATGGGCCCCACCATTATATACAATG
TGCCGTCACGAACTGGTCAAGATATTCCTCCGCGTGTGATTCACACAATG
GCACAGAGTCCGAACCTGGCTGGTGTCAAGGAATG
back to top