FC869293

Overview
NameFC869293
Unique NameFC869293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_SYNS3 (Dihydrodipicolinate synthase OS=Synechococcus sp. (strain CC9311) GN=dapA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.918e-25
Identity = 64/158 (40.51%), Postives = 87/158 (55.06%), Query Frame = 2
Query:  263 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTI---IYNVPSRTGQDIPPRVIHTMAQSPNLAGV 727
            RL+TA+ TP+  +GR D      L    +  G+EG++V GTTGE   +SW E + ++       G  VKV+  TGSNST EA+ AT +  A G   AL + PYY K   EGL +HF ++ +  P +   +YNVP RTG  + P    T AQ  N A V
Sbjct:   14 RLLTAMVTPFDAEGRVDFALAGRLARHLVEEGSEGLVVCGTTGESPTLSWQEQVKMLEVVRQAVGPGVKVLAGTGSNSTGEAVKATREAAASGADGALVVVPYYNKPPQEGLEAHFRAIANAAPELPLMLYNVPGRTGTSLAPA---TAAQLMNCANV 168          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_STRMK (Dihydrodipicolinate synthase OS=Stenotrophomonas maltophilia (strain K279a) GN=dapA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.811e-25
Identity = 56/158 (35.44%), Postives = 91/158 (57.59%), Query Frame = 2
Query:  266 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            LITA+ TP+  DG  D + +  L+++Q+  G  G++V G+TGE   ++  E+ +L+   V   G  + V+  TG + T + I  T +  A+G   AL + P Y + +  GLI+H+ +V   G  P ++YNVP RTG D+ P  +  +A  PN+ G+KE
Sbjct:    6 LITALATPFRADGALDPDGWQRLLHLQLEGGVHGVVVAGSTGEAATLTDAEYDLLLASAVERIGGRIPVMAGTGLSGTAKTIEQTRRAAALGASHALVVTPPYVRPTQAGLIAHYRAVADQGGLPVVLYNVPGRTGCDMQPETVAELASHPNIVGIKE 163          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_EXIS2 (Dihydrodipicolinate synthase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=dapA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.811e-25
Identity = 58/156 (37.18%), Postives = 87/156 (55.77%), Query Frame = 2
Query:  272 TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            TA+ TP+   G  DL  ++ L+  Q+    + ++VGGTTGEG  ++ +E   L+   +      V VI  TG+N+T + I  T+    +G  AA+ + PYY KTS  GL++HF +V      P ++YNVPSRTG  I      T+A+ PN+   KE
Sbjct:    7 TALATPFTSTGELDLAVFEQLIEQQLAANIQALVVGGTTGEGSTLTNEEFETLLETAIRVTAGRVPVIAGTGTNNTAQTIEKTQTAARLGADAAMLVTPYYNKTSQAGLVAHFTAVADAVDLPIMLYNVPSRTGVAISVETAVTLAKHPNIQAFKE 162          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_THIDA (Dihydrodipicolinate synthase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=dapA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.977e-25
Identity = 66/166 (39.76%), Postives = 89/166 (53.61%), Query Frame = 2
Query:  242 AEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            AE   A   + AI TP   DG  DL A   L++  I  G +G+++ GTTGE   +++DEH +LI   V   G  V VI  TG+NST EAI  TE   A G  A L + PYY K + EGL  H+  +      P I+YNVP RT  D+       +A+ P + G+K+
Sbjct:    2 AEISTARGSLVAIVTPMSDDGALDLGALRRLIDWHIEQGTDGIVIVGTTGESPTVNFDEHCLLIRTAVEQAGGRVPVIAGTGANSTSEAIALTECARAAGAQAGLSVVPYYNKPTQEGLYQHYRKIAEAVDLPLILYNVPGRTVADLANDTAVRLAEVPGIVGLKD 167          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_SYNPX (Dihydrodipicolinate synthase OS=Synechococcus sp. (strain WH8102) GN=dapA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.977e-25
Identity = 56/159 (35.22%), Postives = 84/159 (52.83%), Query Frame = 2
Query:  263 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTI---IYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 730
            R++TA+ TP+   G  DL     L    +  G++G++V GTTGE   +SW E + L+       G+  +V+  TGSN T EA+ AT Q  A G   AL + PYY K   +GL +HF ++    P +   +YN+P RTG  + P  +  +   PN+   K
Sbjct:   14 RVVTAMVTPFDDSGAVDLPLAGRLARHLVEQGSDGLVVSGTTGESPTLSWQEQLQLLQAVREAVGSDAQVLAGTGSNCTAEAVEATRQAAAAGADGALVVVPYYNKPPQDGLAAHFRAIAEAAPELPLMLYNIPGRTGCSMAPETVAQLMDCPNVVSFK 172          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_SYNJB (Dihydrodipicolinate synthase OS=Synechococcus sp. GN=dapA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.977e-25
Identity = 55/159 (34.59%), Postives = 89/159 (55.97%), Query Frame = 2
Query:  263 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            R++TA+ TP+  +G  + +    L +    +G++G++V GTTGE   ++W E   L     +      KVI  TGSNSTREAI AT++   +G+  +L + PYY K +  GL  HF ++      P ++YN+PSRTG  + P  +  +A+   +  +KE
Sbjct:    5 RVLTAMVTPFTDEGELNYDEAARLADYLATHGSDGLVVCGTTGESPTLTWQEEYELFRVVRDAVAGRAKVIAGTGSNSTREAIEATKKAAQLGLDGSLQVVPYYNKPTQAGLYEHFKAIAQASDLPILLYNIPSRTGASLQPETVAQLAELETVVAIKE 163          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_LARHH (Dihydrodipicolinate synthase OS=Laribacter hongkongensis (strain HLHK9) GN=dapA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.977e-25
Identity = 59/157 (37.58%), Postives = 87/157 (55.41%), Query Frame = 2
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            + AI TP L DG  D EA D LV+  I +G  G++  GTTGE   ++ +EH+ ++   V      +KVI   G+NST EAI  T +   +G    L + PYY K + EG+  HF ++      P I+YNVP RT  D+    +  +A+ PN+ G+K+
Sbjct:    6 LVAIVTPMLEDGSVDFEALDRLVDFHIESGTSGIVAVGTTGESAALAVEEHLQVVAAVVKRAAGRIKVIAGAGANSTHEAIDLTRESRRLGADQVLSVVPYYNKPTQEGMYRHFRAIAESTDIPVILYNVPGRTVADMCNDTVLRLAEIPNIIGLKD 162          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_THEYD (Dihydrodipicolinate synthase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=dapA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.500e-25
Identity = 60/157 (38.22%), Postives = 89/157 (56.69%), Query Frame = 2
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            + AI TP+   G+ D +A++ L+   I  G  G++  GTTGE   + ++EH  +I  TV      + VI  TGSNST EAI  T++   +G  AAL + PYY K + EGL  H+  +      P I+YNVP RT  +I P+ +  +A+ P + G+KE
Sbjct:    6 MVAIVTPF-KKGKIDEKAFEKLIEWHIKEGTHGIVPCGTTGEASTLDYEEHYKVIEITVKVVNKRIPVIAGTGSNSTDEAIMITKKAEKLGADAALLVTPYYNKPTQEGLYRHYKEIADKTGIPLILYNVPGRTSVNILPQTVARLAEHPRIVGIKE 161          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_STRM5 (Dihydrodipicolinate synthase OS=Stenotrophomonas maltophilia (strain R551-3) GN=dapA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.500e-25
Identity = 56/158 (35.44%), Postives = 90/158 (56.96%), Query Frame = 2
Query:  266 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            LITA+ TP+  DG  D + +  L+++Q+  G  G++V G+TGE   ++  E+  L+   V   G  + V+  TG + T + I  T +  A+G   AL + P Y + +  GLI+H+ +V   G  P ++YNVP RTG D+ P  +  +A  PN+ G+KE
Sbjct:    6 LITALATPFRADGALDPDGWQRLLHLQLEGGVHGVVVAGSTGEAATLTDAEYDQLLASAVERIGGRIPVMAGTGLSGTAKTIEQTRRAAALGASHALVVTPPYVRPTQAGLIAHYRAVADQGGLPVVLYNVPGRTGCDMQPETVAELASHPNIVGIKE 163          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_OENOB (Dihydrodipicolinate synthase OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=dapA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.489e-25
Identity = 63/159 (39.62%), Postives = 91/159 (57.23%), Query Frame = 2
Query:  266 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHAT-EQGFAVGMHAALHINPYYGKTSLEGLISHFDSVL--SMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            L+TAI TP+  + R D + Y  L++ QI +G +G ++ GTTGE   +S DE I L   TV+      KVI  TGSN+T+E I  T E G   G+ AAL + PYY K    G+I+HF ++   S  P +IYN+P R+   +    +  +A  PN+  VK+
Sbjct:   10 LLTAIITPFDKNNRIDFQVYRRLIDSQISDGVKGFVISGTTGEAPTLSHDEKIELFKRTVDFVSGRAKVIVGTGSNNTKETIEFTKEAGRINGIDAALIVTPYYNKPDQAGMIAHFSTIADESPLPIVIYNIPGRSISALTVESLLKLADHPNIIAVKQ 168          
The following BLAST results are available for this feature:
BLAST of FC869293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 490
Match NameE-valueIdentityDescription
DAPA_SYNS32.918e-2540.51Dihydrodipicolinate synthase OS=Synechococcus sp. ... [more]
DAPA_STRMK3.811e-2535.44Dihydrodipicolinate synthase OS=Stenotrophomonas m... [more]
DAPA_EXIS23.811e-2537.18Dihydrodipicolinate synthase OS=Exiguobacterium si... [more]
DAPA_THIDA4.977e-2539.76Dihydrodipicolinate synthase OS=Thiobacillus denit... [more]
DAPA_SYNPX4.977e-2535.22Dihydrodipicolinate synthase OS=Synechococcus sp. ... [more]
DAPA_SYNJB4.977e-2534.59Dihydrodipicolinate synthase OS=Synechococcus sp. ... [more]
DAPA_LARHH4.977e-2537.58Dihydrodipicolinate synthase OS=Laribacter hongkon... [more]
DAPA_THEYD6.500e-2538.22Dihydrodipicolinate synthase OS=Thermodesulfovibri... [more]
DAPA_STRM56.500e-2535.44Dihydrodipicolinate synthase OS=Stenotrophomonas m... [more]
DAPA_OENOB8.489e-2539.62Dihydrodipicolinate synthase OS=Oenococcus oeni (s... [more]

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Properties
Property NameValue
Genbank descriptionC31010F06EF AbioticL1 Citrus clementina cDNA clone C31010F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869293 ID=FC869293; Name=FC869293; organism=Citrus clementina; type=EST; length=735bp
TGGCCGGAGAAAGTGTGTGCACTGACCTCCCGAGCCTTCGGAGACTTGAC
TGCCTAAAACTGAGAAGAAAAGGAAAGAGGAAATGGTTCACTTGAATGCG
TGCGAGTTGAACCTCAGTAACTGCGGACCCGTCTCTGTCTCTTGCACCGG
GAAAAACCGGAAATGGAGACCCCCTCAAGCAGCTATAATTCCCAATTACC
ATCTTCCAATGCGTAGTTTTGAGGTTAAAAACAGGACATCTGCAGAGGAT
ATAAAGGCACTTAGATTGATAACTGCCATCAAAACGCCATATCTACCAGA
TGGCAGATTTGATCTTGAAGCTTATGATGACCTAGTGAATATGCAGATCG
TAAATGGTGCTGAAGGTATGATTGTTGGTGGCACAACTGGTGAAGGCCAA
CTCATGAGCTGGGATGAACATATAATGCTTATTGGTCACACAGTGAACTG
CTTTGGCGCCTCAGTAAAGGTAATTGGAAATACTGGAAGCAACTCCACCA
GGGAAGCAATTCATGCTACTGAACAAGGTTTTGCAGTTGGTATGCATGCA
GCACTACACATAAATCCTTACTATGGCAAAACTTCCTTGGAGGGCTTGAT
TTCTCACTTTGATAGTGTGTTGTCCATGGGCCCCACCATTATATACAATG
TGCCGTCACGAACTGGTCAAGATATTCCTCCGCGTGTGATTCACACAATG
GCACAGAGTCCGAACCTGGCTGGTGTCAAGGAATG
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