FC869293

Overview
NameFC869293
Unique NameFC869293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_HALSA (Dihydrodipicolinate synthase OS=Halobacterium salinarium GN=dapA PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 41/158 (25.95%), Postives = 73/158 (46.20%), Query Frame = 2
Query:  266 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            ++  + T +  D   D +   D   M +  G  G+   GT GE  L++  E   ++   V+  G  V VI   G+ STR+ +   E   +VG    + + P+Y        + H+  V +    P  +Y++PS+TG ++    +  +A+   LAGVK+
Sbjct:   19 VVPPVVTAFDADESLDADTTADHARMVVDAGVHGVFPLGTNGEFPLLTPSERDRVVTAVVDEVGGEVPVIAGVGAPSTRQTVAHAEHAASVGADGVVVVTPFYYPLDGTAAVEHYRRVAAAVDCPVYVYHIPSKTGNELSLETLAALAEIDTLAGVKD 176          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_HALS3 (Dihydrodipicolinate synthase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=dapA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 41/158 (25.95%), Postives = 73/158 (46.20%), Query Frame = 2
Query:  266 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            ++  + T +  D   D +   D   M +  G  G+   GT GE  L++  E   ++   V+  G  V VI   G+ STR+ +   E   +VG    + + P+Y        + H+  V +    P  +Y++PS+TG ++    +  +A+   LAGVK+
Sbjct:   19 VVPPVVTAFDADESLDADTTADHARMVVDAGVHGVFPLGTNGEFPLLTPSERDRVVTAVVDEVGGEVPVIAGVGAPSTRQTVAHAEHAASVGADGVVVVTPFYYPLDGTAAVEHYRRVAAAVDCPVYVYHIPSKTGNELSLETLAALAEIDTLAGVKD 176          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPAL_HUMAN (Dihydrodipicolinate synthase-like, mitochondrial OS=Homo sapiens GN=DHDPSL PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 41/156 (26.28%), Postives = 75/156 (48.08%), Query Frame = 2
Query:  278 IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY--GKTSLEGLISHFDSV--LSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            + TP+      D    ++ ++        G +V G+ GE   ++  E + ++         +  ++  +G  ST+  +  T     VG  AA+ + P Y  G+ S   LI H+  V  LS  P ++Y+VP+ TG D+P   + T++Q PN+ G+K+
Sbjct:   42 VTTPFTATAEVDYGKLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPVDAVVTLSQHPNIVGMKD 197          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPAL_MOUSE (Dihydrodipicolinate synthase-like, mitochondrial OS=Mus musculus GN=Dhdpsl PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.076e-11
Identity = 40/156 (25.64%), Postives = 73/156 (46.79%), Query Frame = 2
Query:  278 IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY--GKTSLEGLISHFDSVLSMGP--TIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            + TP+      D    ++ +N        G +V G+TGE   ++  E + ++            +I  +G  ST+  +  T     VG   A+ + P Y  G+ S   LI H+  V  + P   ++Y+VP+ TG ++P   + T++Q PN+ G+K+
Sbjct:   36 VTTPFTATAEVDYGKLEENLNRLATFPFRGFVVQGSTGEFPFLTSLERLEVVSRVRQAIPKDKFLIAGSGCESTQATVEMTVSMAQVGADVAMVVTPCYYRGRMSSAALIHHYTKVADVSPIPVVLYSVPANTGLELPVDAVVTLSQHPNIIGLKD 191          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA2_CLOAB (Dihydrodipicolinate synthase 2 OS=Clostridium acetobutylicum GN=dapA2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.076e-11
Identity = 41/152 (26.97%), Postives = 72/152 (47.37%), Query Frame = 2
Query:  284 TPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            TP+  DG+ DL +Y+ L+      G  G +   TTGE   +S  E+  ++  TV C   ++ +    G N+T +     +      +   L + PYY +    G+  HF  +        ++YN+P RTG++I    I  +++  N+ GVK+
Sbjct:   12 TPF-KDGKVDLASYEKLIRHYSKKGVAGFMPLATTGETPTLSDYEYQSILEKTVECNELNLPIYVGFGGNNTEKMTKDIKMLDKYNIKGILSVCPYYNRPDQRGIYEHFKRISESTSLDIVLYNIPYRTGRNIENDTIRRLSELDNIVGVKD 162          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_THEPD (Dihydrodipicolinate synthase OS=Thermofilum pendens (strain Hrk 5) GN=dapA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-11
Identity = 49/158 (31.01%), Postives = 75/158 (47.47%), Query Frame = 2
Query:  266 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMA-QSPNLAGVK 730
            +I+   TP+  D   D EA   L   Q   G  G+    TTGE   +S +E + +    +   G  V VI    +N T +++        +G+  A+   PY+ K S E L  HF ++L     P I+YN+P+ TG +IP  +   +A +  NLAG K
Sbjct:    8 VISPFITPFREDLSLDREAVAWLARYQAEKGVHGIFPNSTTGEFVHLSREEAVEVTRLVLEAVGGKVWVIPGISANYTEDSVALGRTFKDLGVDGAVVTPPYFFKVSPERLKVHFSTILEKVDLPIIVYNIPATTGINIPVGLYLELAKEHSNLAGAK 165          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPAL_DANRE (Dihydrodipicolinate synthase-like, mitochondrial OS=Danio rerio GN=zgc:77082 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-11
Identity = 41/177 (23.16%), Postives = 81/177 (45.76%), Query Frame = 2
Query:  215 SFEVKNRTSAEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP--YYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            S+  ++ T+ + +    +   I TP+      D +  DD +         G++V G+ GE   ++ +E + ++            V+  +G  STR  I  +++    G    L + P  Y G+     LI+H+  V      P ++Y+VP+ TG D+P   +  +++ PN+ G+K+
Sbjct:   18 SWRSQSHTAGKRLDISGIYPPIATPFTEPEDVDYQKLDDNIRKYGRLPFRGLVVQGSNGEYPYLTAEERVEVVKRVKQALPKDKLVMAGSGCESTRATIQMSQRMADAGADCVLVVTPCFYRGRMDSRALINHYSKVADSCSVPVVLYSVPANTGLDLPVDAVIQLSKHPNIVGLKD 194          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_WIGBR (Dihydrodipicolinate synthase OS=Wigglesworthia glossinidia brevipalpis GN=dapA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 40/157 (25.48%), Postives = 70/157 (44.59%), Query Frame = 2
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            I A+ TP    G+ D ++   L+   IVN    ++  GTTGE   ++++E   ++ +        + VI    S++             + +   L   PYY   +  G+ ++F  +      P IIYN P RTG DI P  +  ++   N+ G+K+
Sbjct:    6 IVALITPMKKSGKIDFDSIKGLIEYHIVNNTSAILAIGTTGENFSLTFEEQCNIVKYIFETCDKKIPVIAGIISSNIENIKKQINFYNKINISGILISTPYYSCPTQNGIFNYFKEISKNTDIPQIIYNNPKRTGCDILPETVSKLSYIKNIIGIKD 162          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: NANA_SALTY (N-acetylneuraminate lyase OS=Salmonella typhimurium GN=nanA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 42/164 (25.61%), Postives = 78/164 (47.56%), Query Frame = 2
Query:  254 KALR-LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            KAL+ ++ A+ TP+    + D E+   LV   I  G +G+ VGG+TGE  + S  E   ++          + +I + G+ ST E+          G  A   + P+Y   S E    H+ +++      P ++YN+P+ +G  +    I+T+   P ++ +K+
Sbjct:    3 KALQGVMAALLTPFDHQQQLDSESLRRLVRFNIGQGIDGLYVGGSTGEAFVQSLAEREQVLEIVAEEAKGKITLIAHVGTVSTAESQQLASAAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVSALKQ 166          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: NANA_SALSV (N-acetylneuraminate lyase OS=Salmonella schwarzengrund (strain CVM19633) GN=nanA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 42/164 (25.61%), Postives = 78/164 (47.56%), Query Frame = 2
Query:  254 KALR-LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            KAL+ ++ A+ TP+    + D E+   LV   I  G +G+ VGG+TGE  + S  E   ++          + +I + G+ ST E+          G  A   + P+Y   S E    H+ +++      P ++YN+P+ +G  +    I+T+   P ++ +K+
Sbjct:    3 KALQGVMAALLTPFDHQQQLDSESLRRLVRFNIGQGIDGLYVGGSTGEAFVQSLAEREQVLEIVAEEAKGKITLIAHVGTVSTAESQQLASAAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVSALKQ 166          
The following BLAST results are available for this feature:
BLAST of FC869293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 490
Match NameE-valueIdentityDescription
DAPA_HALSA8.241e-1225.95Dihydrodipicolinate synthase OS=Halobacterium sali... [more]
DAPA_HALS38.241e-1225.95Dihydrodipicolinate synthase OS=Halobacterium sali... [more]
DAPAL_HUMAN8.241e-1226.28Dihydrodipicolinate synthase-like, mitochondrial O... [more]
DAPAL_MOUSE1.076e-1125.64Dihydrodipicolinate synthase-like, mitochondrial O... [more]
DAPA2_CLOAB1.076e-1126.97Dihydrodipicolinate synthase 2 OS=Clostridium acet... [more]
DAPA_THEPD2.398e-1131.01Dihydrodipicolinate synthase OS=Thermofilum penden... [more]
DAPAL_DANRE2.398e-1123.16Dihydrodipicolinate synthase-like, mitochondrial O... [more]
DAPA_WIGBR3.132e-1125.48Dihydrodipicolinate synthase OS=Wigglesworthia glo... [more]
NANA_SALTY9.112e-1125.61N-acetylneuraminate lyase OS=Salmonella typhimuriu... [more]
NANA_SALSV9.112e-1125.61N-acetylneuraminate lyase OS=Salmonella schwarzeng... [more]

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Properties
Property NameValue
Genbank descriptionC31010F06EF AbioticL1 Citrus clementina cDNA clone C31010F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869293 ID=FC869293; Name=FC869293; organism=Citrus clementina; type=EST; length=735bp
TGGCCGGAGAAAGTGTGTGCACTGACCTCCCGAGCCTTCGGAGACTTGAC
TGCCTAAAACTGAGAAGAAAAGGAAAGAGGAAATGGTTCACTTGAATGCG
TGCGAGTTGAACCTCAGTAACTGCGGACCCGTCTCTGTCTCTTGCACCGG
GAAAAACCGGAAATGGAGACCCCCTCAAGCAGCTATAATTCCCAATTACC
ATCTTCCAATGCGTAGTTTTGAGGTTAAAAACAGGACATCTGCAGAGGAT
ATAAAGGCACTTAGATTGATAACTGCCATCAAAACGCCATATCTACCAGA
TGGCAGATTTGATCTTGAAGCTTATGATGACCTAGTGAATATGCAGATCG
TAAATGGTGCTGAAGGTATGATTGTTGGTGGCACAACTGGTGAAGGCCAA
CTCATGAGCTGGGATGAACATATAATGCTTATTGGTCACACAGTGAACTG
CTTTGGCGCCTCAGTAAAGGTAATTGGAAATACTGGAAGCAACTCCACCA
GGGAAGCAATTCATGCTACTGAACAAGGTTTTGCAGTTGGTATGCATGCA
GCACTACACATAAATCCTTACTATGGCAAAACTTCCTTGGAGGGCTTGAT
TTCTCACTTTGATAGTGTGTTGTCCATGGGCCCCACCATTATATACAATG
TGCCGTCACGAACTGGTCAAGATATTCCTCCGCGTGTGATTCACACAATG
GCACAGAGTCCGAACCTGGCTGGTGTCAAGGAATG
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