FC869293

Overview
NameFC869293
Unique NameFC869293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: NANA_SALPC (N-acetylneuraminate lyase OS=Salmonella paratyphi C (strain RKS4594) GN=nanA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 42/164 (25.61%), Postives = 78/164 (47.56%), Query Frame = 2
Query:  254 KALR-LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            KAL+ ++ A+ TP+    + D E+   LV   I  G +G+ VGG+TGE  + S  E   ++          + +I + G+ ST E+          G  A   + P+Y   S E    H+ +++      P ++YN+P+ +G  +    I+T+   P ++ +K+
Sbjct:    3 KALQGVMAALLTPFDHQQQLDSESLRRLVRFNIGQGIDGLYVGGSTGEAFVQSLAEREQVLEIVAEEAKGKITLIAHVGTVSTAESQQLASAAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVSALKQ 166          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: NANA_SALPB (N-acetylneuraminate lyase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=nanA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 42/164 (25.61%), Postives = 78/164 (47.56%), Query Frame = 2
Query:  254 KALR-LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            KAL+ ++ A+ TP+    + D E+   LV   I  G +G+ VGG+TGE  + S  E   ++          + +I + G+ ST E+          G  A   + P+Y   S E    H+ +++      P ++YN+P+ +G  +    I+T+   P ++ +K+
Sbjct:    3 KALQGVMAALLTPFDHQQQLDSESLRRLVRFNIGQGIDGLYVGGSTGEAFVQSLAEREQVLEIVAEEAKGKITLIAHVGTVSTAESQQLASAAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVSALKQ 166          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: NANA_SALNS (N-acetylneuraminate lyase OS=Salmonella newport (strain SL254) GN=nanA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 42/164 (25.61%), Postives = 78/164 (47.56%), Query Frame = 2
Query:  254 KALR-LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            KAL+ ++ A+ TP+    + D E+   LV   I  G +G+ VGG+TGE  + S  E   ++          + +I + G+ ST E+          G  A   + P+Y   S E    H+ +++      P ++YN+P+ +G  +    I+T+   P ++ +K+
Sbjct:    3 KALQGVMAALLTPFDHQQQLDSESLRRLVRFNIGQGIDGLYVGGSTGEAFVQSLAEREQVLEIVAEEAKGKITLIAHVGTVSTAESQQLASAAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVSALKQ 166          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: NANA_SALHS (N-acetylneuraminate lyase OS=Salmonella heidelberg (strain SL476) GN=nanA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 42/164 (25.61%), Postives = 78/164 (47.56%), Query Frame = 2
Query:  254 KALR-LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            KAL+ ++ A+ TP+    + D E+   LV   I  G +G+ VGG+TGE  + S  E   ++          + +I + G+ ST E+          G  A   + P+Y   S E    H+ +++      P ++YN+P+ +G  +    I+T+   P ++ +K+
Sbjct:    3 KALQGVMAALLTPFDHQQQLDSESLRRLVRFNIGQGIDGLYVGGSTGEAFVQSLAEREQVLEIVAEEAKGKITLIAHVGTVSTAESQQLASAAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVSALKQ 166          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: NANA_SALG2 (N-acetylneuraminate lyase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=nanA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 42/164 (25.61%), Postives = 78/164 (47.56%), Query Frame = 2
Query:  254 KALR-LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            KAL+ ++ A+ TP+    + D E+   LV   I  G +G+ VGG+TGE  + S  E   ++          + +I + G+ ST E+          G  A   + P+Y   S E    H+ +++      P ++YN+P+ +G  +    I+T+   P ++ +K+
Sbjct:    3 KALQGVMAALLTPFDHQQQLDSESLRRLVRFNIGQGIDGLYVGGSTGEAFVQSLAEREQVLEIVAEEAKGKITLIAHVGTVSTAESQQLASAAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVSALKQ 166          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: NANA_SALEP (N-acetylneuraminate lyase OS=Salmonella enteritidis PT4 (strain P125109) GN=nanA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 42/164 (25.61%), Postives = 78/164 (47.56%), Query Frame = 2
Query:  254 KALR-LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            KAL+ ++ A+ TP+    + D E+   LV   I  G +G+ VGG+TGE  + S  E   ++          + +I + G+ ST E+          G  A   + P+Y   S E    H+ +++      P ++YN+P+ +G  +    I+T+   P ++ +K+
Sbjct:    3 KALQGVMAALLTPFDHQQQLDSESLRRLVRFNIGQGIDGLYVGGSTGEAFVQSLAEREQVLEIVAEEAKGKITLIAHVGTVSTAESQQLASAAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVSALKQ 166          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: NANA_SALDC (N-acetylneuraminate lyase OS=Salmonella dublin (strain CT_02021853) GN=nanA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 42/164 (25.61%), Postives = 78/164 (47.56%), Query Frame = 2
Query:  254 KALR-LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            KAL+ ++ A+ TP+    + D E+   LV   I  G +G+ VGG+TGE  + S  E   ++          + +I + G+ ST E+          G  A   + P+Y   S E    H+ +++      P ++YN+P+ +G  +    I+T+   P ++ +K+
Sbjct:    3 KALQGVMAALLTPFDHQQQLDSESLRRLVRFNIGQGIDGLYVGGSTGEAFVQSLAEREQVLEIVAEEAKGKITLIAHVGTVSTAESQQLASAAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVSALKQ 166          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: NANA_SALCH (N-acetylneuraminate lyase OS=Salmonella choleraesuis GN=nanA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 42/164 (25.61%), Postives = 78/164 (47.56%), Query Frame = 2
Query:  254 KALR-LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            KAL+ ++ A+ TP+    + D E+   LV   I  G +G+ VGG+TGE  + S  E   ++          + +I + G+ ST E+          G  A   + P+Y   S E    H+ +++      P ++YN+P+ +G  +    I+T+   P ++ +K+
Sbjct:    3 KALQGVMAALLTPFDHQQQLDSESLRRLVRFNIGQGIDGLYVGGSTGEAFVQSLAEREQVLEIVAEEAKGKITLIAHVGTVSTAESQQLASAAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVSALKQ 166          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: NANA_SALA4 (N-acetylneuraminate lyase OS=Salmonella agona (strain SL483) GN=nanA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 42/164 (25.61%), Postives = 78/164 (47.56%), Query Frame = 2
Query:  254 KALR-LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            KAL+ ++ A+ TP+    + D E+   LV   I  G +G+ VGG+TGE  + S  E   ++          + +I + G+ ST E+          G  A   + P+Y   S E    H+ +++      P ++YN+P+ +G  +    I+T+   P ++ +K+
Sbjct:    3 KALQGVMAALLTPFDHQQQLDSESLRRLVRFNIGQGIDGLYVGGSTGEAFVQSLAEREQVLEIVAEEAKGKITLIAHVGTVSTAESQQLASAAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVSALKQ 166          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_CHLAB (Dihydrodipicolinate synthase OS=Chlamydophila abortus GN=dapA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 44/160 (27.50%), Postives = 79/160 (49.38%), Query Frame = 2
Query:  260 LRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            ++L+TA  TP+LPD   D  ++++L+  Q    + G+++ G+TGE   M+  E   L+ +  +     V +I      S  EA        +  ++  L   P Y K  + G    F+S+L+    P I+YN+PSR+G  +    + ++A  P   G+K+
Sbjct:    1 MKLLTASVTPFLPDHSIDFLSFENLLRFQ-ERESHGVVLLGSTGESLSMTAKEKESLVSYACS-LNLKVPIIVGVPGTSLHEASEWIHTCQSYPIYGFLITTPIYTKPGVHGQTLWFESLLNKANKPAILYNIPSRSGTTLYLDTVRSLAAHPFFYGLKD 158          
The following BLAST results are available for this feature:
BLAST of FC869293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 490
Match NameE-valueIdentityDescription
NANA_SALPC9.112e-1125.61N-acetylneuraminate lyase OS=Salmonella paratyphi ... [more]
NANA_SALPB9.112e-1125.61N-acetylneuraminate lyase OS=Salmonella paratyphi ... [more]
NANA_SALNS9.112e-1125.61N-acetylneuraminate lyase OS=Salmonella newport (s... [more]
NANA_SALHS9.112e-1125.61N-acetylneuraminate lyase OS=Salmonella heidelberg... [more]
NANA_SALG29.112e-1125.61N-acetylneuraminate lyase OS=Salmonella gallinarum... [more]
NANA_SALEP9.112e-1125.61N-acetylneuraminate lyase OS=Salmonella enteritidi... [more]
NANA_SALDC9.112e-1125.61N-acetylneuraminate lyase OS=Salmonella dublin (st... [more]
NANA_SALCH9.112e-1125.61N-acetylneuraminate lyase OS=Salmonella choleraesu... [more]
NANA_SALA49.112e-1125.61N-acetylneuraminate lyase OS=Salmonella agona (str... [more]
DAPA_CHLAB9.112e-1127.50Dihydrodipicolinate synthase OS=Chlamydophila abor... [more]

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Properties
Property NameValue
Genbank descriptionC31010F06EF AbioticL1 Citrus clementina cDNA clone C31010F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869293 ID=FC869293; Name=FC869293; organism=Citrus clementina; type=EST; length=735bp
TGGCCGGAGAAAGTGTGTGCACTGACCTCCCGAGCCTTCGGAGACTTGAC
TGCCTAAAACTGAGAAGAAAAGGAAAGAGGAAATGGTTCACTTGAATGCG
TGCGAGTTGAACCTCAGTAACTGCGGACCCGTCTCTGTCTCTTGCACCGG
GAAAAACCGGAAATGGAGACCCCCTCAAGCAGCTATAATTCCCAATTACC
ATCTTCCAATGCGTAGTTTTGAGGTTAAAAACAGGACATCTGCAGAGGAT
ATAAAGGCACTTAGATTGATAACTGCCATCAAAACGCCATATCTACCAGA
TGGCAGATTTGATCTTGAAGCTTATGATGACCTAGTGAATATGCAGATCG
TAAATGGTGCTGAAGGTATGATTGTTGGTGGCACAACTGGTGAAGGCCAA
CTCATGAGCTGGGATGAACATATAATGCTTATTGGTCACACAGTGAACTG
CTTTGGCGCCTCAGTAAAGGTAATTGGAAATACTGGAAGCAACTCCACCA
GGGAAGCAATTCATGCTACTGAACAAGGTTTTGCAGTTGGTATGCATGCA
GCACTACACATAAATCCTTACTATGGCAAAACTTCCTTGGAGGGCTTGAT
TTCTCACTTTGATAGTGTGTTGTCCATGGGCCCCACCATTATATACAATG
TGCCGTCACGAACTGGTCAAGATATTCCTCCGCGTGTGATTCACACAATG
GCACAGAGTCCGAACCTGGCTGGTGTCAAGGAATG
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