FC869293

Overview
NameFC869293
Unique NameFC869293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_PROMA (Dihydrodipicolinate synthase OS=Prochlorococcus marinus GN=dapA PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.109e-24
Identity = 62/159 (38.99%), Postives = 82/159 (51.57%), Query Frame = 2
Query:  263 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTI---IYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 730
            RL+TA+ TP+   G  D      L    +  G++G+IV GTTGE   +SW+E   L+    N    S KV+  TGSNST EAIHAT +    G   AL + PYY K    GL SHF +V    P +   +YN+P RTG  I P  +  +    N+   K
Sbjct:   14 RLLTAMVTPFDTAGAVDFALAARLARYLVDQGSDGLIVCGTTGESPTLSWEEQYQLLETVRNAVNGSAKVLAGTGSNSTSEAIHATAKAAEAGADGALVVVPYYNKPPQAGLESHFRAVAQAAPDLPLMLYNIPGRTGCSISPITVQRLMNCSNIVSFK 172          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_NITEU (Dihydrodipicolinate synthase OS=Nitrosomonas europaea GN=dapA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.109e-24
Identity = 63/157 (40.13%), Postives = 85/157 (54.14%), Query Frame = 2
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            + AI TP L DG  DL+ +  L++  I    +G++V GTTGE   + +DEH +LI   V      + VI  TG+NSTREAI  T      G  A L + PYY K + EGL  HF ++      P I+YNVP RT  DI       +AQ P + G+K+
Sbjct:    6 LVAIVTPMLEDGALDLDRFCALIDFHIEQKTDGIVVVGTTGESPTVDFDEHHLLIRTAVTHAAGRIPVIAGTGANSTREAIELTVFSKNAGADACLSVAPYYNKPTQEGLYQHFKAIAEAVDIPMILYNVPGRTVVDISNDTALRLAQIPGIVGIKD 162          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_SYNPW (Dihydrodipicolinate synthase OS=Synechococcus sp. (strain WH7803) GN=dapA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.448e-24
Identity = 58/159 (36.48%), Postives = 84/159 (52.83%), Query Frame = 2
Query:  263 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTI---IYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 730
            RL+TA+ TP+  +G  DL     L    +  G++G++V GTTGE   +SWDE   L+       G  V V+  TGSN T+EA+ AT +  A G   AL + PYY K   EGL +HF ++    P +   +YN+P RTG  + P  +  +    N+   K
Sbjct:   14 RLLTAMVTPFDAEGAVDLALAGRLARHLVDEGSDGLVVCGTTGESPTLSWDEQSQLLEAVRQAVGPGVPVLAGTGSNCTQEAVKATREAAAAGADGALVVTPYYNKPPQEGLEAHFRAIAEAAPELPLMLYNIPGRTGCSMEPATVARLMDCSNIVSFK 172          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_LEPBL (Dihydrodipicolinate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=dapA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.448e-24
Identity = 60/156 (38.46%), Postives = 87/156 (55.77%), Query Frame = 2
Query:  272 TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVL--SMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            TAI TP+  D + D ++Y+ L+  QI  G  G++  GTTGE   +S  EH  LI  TV      ++V+  TGSNSTREAI  TE      +   L +NPYY K + EGL  HF +V   S  P ++YN+P RT  ++ P  +  +++   +  +KE
Sbjct:    7 TAIITPFKND-KIDYDSYNKLLEKQIKAGVNGVVPCGTTGESPTLSHTEHAELIRETVKAVQGKIQVVAGTGSNSTREAIELTEAACKDSVDGILSVNPYYNKPTQEGLFQHFQAVAEHSSVPVMLYNIPGRTSINLQPETVFRLSEIKRIRSMKE 161          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_LEPBJ (Dihydrodipicolinate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=dapA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.448e-24
Identity = 60/156 (38.46%), Postives = 87/156 (55.77%), Query Frame = 2
Query:  272 TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVL--SMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            TAI TP+  D + D ++Y+ L+  QI  G  G++  GTTGE   +S  EH  LI  TV      ++V+  TGSNSTREAI  TE      +   L +NPYY K + EGL  HF +V   S  P ++YN+P RT  ++ P  +  +++   +  +KE
Sbjct:    7 TAIITPFKND-KIDYDSYNKLLEKQIKAGVNGVVPCGTTGESPTLSHTEHAELIRETVKAVQGKIQVVAGTGSNSTREAIELTEAACKDSVDGILSVNPYYNKPTQEGLFQHFQAVAEHSSVPVMLYNIPGRTSINLQPETVFRLSEIKRIRSMKE 161          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_HERAR (Dihydrodipicolinate synthase OS=Herminiimonas arsenicoxydans GN=dapA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.891e-24
Identity = 62/157 (39.49%), Postives = 85/157 (54.14%), Query Frame = 2
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            I AI TP   DG  DL     L++  I  G +G+++ GTTGE   +S DEH  LI   V      + +I  TG NST EAI  T+    VG  A+L + PYY + + EG+  HF  ++     P I+YNVP RT  D+    I  +AQ P++ GVK+
Sbjct:    6 IVAIVTPMHADGALDLPGLRKLIDWHIAEGTDGIVIVGTTGESPTVSVDEHCELIRVAVEHTAKRIPIIAGTGGNSTSEAIELTQFAKDVGADASLQVVPYYNRPTQEGMYQHFKKIVEAVDLPAILYNVPGRTVADMSNETILRLAQIPSVIGVKD 162          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_PROMP (Dihydrodipicolinate synthase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dapA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.470e-24
Identity = 60/172 (34.88%), Postives = 91/172 (52.91%), Query Frame = 2
Query:  224 VKNRTSAEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 730
            + N T   +    R++TA+ TP+  +G  D E    L N    NG++G+++ GTTGE   ++W E   L         +  KVI  TGSN T EAI AT++ +  G   AL + PYY K   EGL  HF S+ +     P ++YN+P RTG ++ P  ++ +   PN+  +K
Sbjct:    2 IPNNTKFSNPLFGRILTAMVTPFKKNGAVDYELAIKLSNYLCENGSDGIVLCGTTGESPTLTWAEQHNLFVAVKGSLNSRSKVIVGTGSNCTSEAIEATQKAYEFGADGALVVVPYYNKPPQEGLYKHFSSIANAASDLPLMLYNIPGRTGCNLLPTTVNKLMNFPNILSIK 173          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_LEPIN (Dihydrodipicolinate synthase OS=Leptospira interrogans GN=dapA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.470e-24
Identity = 60/156 (38.46%), Postives = 87/156 (55.77%), Query Frame = 2
Query:  272 TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVL--SMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            TAI TP+  D + D ++Y  L+  QI  G  G++  GTTGE   +S  EH  LI  TV      ++V+  TGSNST+EAI  TE     G+   L +NPYY K + EGL  HF S+   S  P ++YN+P RT  ++ P  +  +++   +  +KE
Sbjct:   20 TAIITPFKND-KIDYDSYFKLLEKQIKAGVSGVVPCGTTGESPTLSHSEHAELIRETVKAVQGKIQVVAGTGSNSTKEAIELTEAACKDGVDGILSVNPYYNKPTQEGLFQHFKSIAEHSTVPVMLYNIPGRTSVNLLPETVLRLSEVKQIRSMKE 174          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_LEPIC (Dihydrodipicolinate synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=dapA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.470e-24
Identity = 60/156 (38.46%), Postives = 87/156 (55.77%), Query Frame = 2
Query:  272 TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVL--SMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            TAI TP+  D + D ++Y  L+  QI  G  G++  GTTGE   +S  EH  LI  TV      ++V+  TGSNST+EAI  TE     G+   L +NPYY K + EGL  HF S+   S  P ++YN+P RT  ++ P  +  +++   +  +KE
Sbjct:   20 TAIITPFKND-KIDYDSYFKLLEKQIKAGVSGVVPCGTTGESPTLSHSEHAELIRETVKAVQGKIQVVAGTGSNSTKEAIELTEAACKDGVDGILSVNPYYNKPTQEGLFQHFKSIAEHSTVPVMLYNIPGRTSVNLLPETVLRLSEVKQIRSMKE 174          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_GEOMG (Dihydrodipicolinate synthase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=dapA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.470e-24
Identity = 59/157 (37.58%), Postives = 88/157 (56.05%), Query Frame = 2
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            I AI TP+  +G+ D E   +LV  QI NG + ++  GTTGE   + +DEH+ ++   +      V VI  TGSNST EAI  +++   VG    L + PYY K + EGL+ H+ ++      P I+YNVP RTG ++ P  +  +A   N+  +KE
Sbjct:    6 IVAIVTPF-NNGQVDFEKLRELVEFQISNGTDAIVPCGTTGEASTLDYDEHMDVVKTVIEQVNKRVPVIAGTGSNSTAEAIELSQKAKEVGADGVLLVTPYYNKPTQEGLVRHYTAIADAVAIPQILYNVPGRTGVNMLPETVARLAPHKNIVAIKE 161          
The following BLAST results are available for this feature:
BLAST of FC869293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 490
Match NameE-valueIdentityDescription
DAPA_PROMA1.109e-2438.99Dihydrodipicolinate synthase OS=Prochlorococcus ma... [more]
DAPA_NITEU1.109e-2440.13Dihydrodipicolinate synthase OS=Nitrosomonas europ... [more]
DAPA_SYNPW1.448e-2436.48Dihydrodipicolinate synthase OS=Synechococcus sp. ... [more]
DAPA_LEPBL1.448e-2438.46Dihydrodipicolinate synthase OS=Leptospira borgpet... [more]
DAPA_LEPBJ1.448e-2438.46Dihydrodipicolinate synthase OS=Leptospira borgpet... [more]
DAPA_HERAR1.891e-2439.49Dihydrodipicolinate synthase OS=Herminiimonas arse... [more]
DAPA_PROMP2.470e-2434.88Dihydrodipicolinate synthase OS=Prochlorococcus ma... [more]
DAPA_LEPIN2.470e-2438.46Dihydrodipicolinate synthase OS=Leptospira interro... [more]
DAPA_LEPIC2.470e-2438.46Dihydrodipicolinate synthase OS=Leptospira interro... [more]
DAPA_GEOMG2.470e-2437.58Dihydrodipicolinate synthase OS=Geobacter metallir... [more]

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Properties
Property NameValue
Genbank descriptionC31010F06EF AbioticL1 Citrus clementina cDNA clone C31010F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869293 ID=FC869293; Name=FC869293; organism=Citrus clementina; type=EST; length=735bp
TGGCCGGAGAAAGTGTGTGCACTGACCTCCCGAGCCTTCGGAGACTTGAC
TGCCTAAAACTGAGAAGAAAAGGAAAGAGGAAATGGTTCACTTGAATGCG
TGCGAGTTGAACCTCAGTAACTGCGGACCCGTCTCTGTCTCTTGCACCGG
GAAAAACCGGAAATGGAGACCCCCTCAAGCAGCTATAATTCCCAATTACC
ATCTTCCAATGCGTAGTTTTGAGGTTAAAAACAGGACATCTGCAGAGGAT
ATAAAGGCACTTAGATTGATAACTGCCATCAAAACGCCATATCTACCAGA
TGGCAGATTTGATCTTGAAGCTTATGATGACCTAGTGAATATGCAGATCG
TAAATGGTGCTGAAGGTATGATTGTTGGTGGCACAACTGGTGAAGGCCAA
CTCATGAGCTGGGATGAACATATAATGCTTATTGGTCACACAGTGAACTG
CTTTGGCGCCTCAGTAAAGGTAATTGGAAATACTGGAAGCAACTCCACCA
GGGAAGCAATTCATGCTACTGAACAAGGTTTTGCAGTTGGTATGCATGCA
GCACTACACATAAATCCTTACTATGGCAAAACTTCCTTGGAGGGCTTGAT
TTCTCACTTTGATAGTGTGTTGTCCATGGGCCCCACCATTATATACAATG
TGCCGTCACGAACTGGTCAAGATATTCCTCCGCGTGTGATTCACACAATG
GCACAGAGTCCGAACCTGGCTGGTGTCAAGGAATG
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