FC869293

Overview
NameFC869293
Unique NameFC869293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_SYNAS (Dihydrodipicolinate synthase OS=Syntrophus aciditrophicus (strain SB) GN=dapA PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.226e-24
Identity = 62/157 (39.49%), Postives = 88/157 (56.05%), Query Frame = 2
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            I AI TP+  +G  D  A  DL+  QI NG +G++  GTTGE   +S +EH  +I  T++     V VI  TGSNST EA+  T+     G    L + PYY + + EGL  H+ ++      P I YN+PSRTG +I P  +  +A+  N+ G+KE
Sbjct:    6 IVAIVTPF-KNGEIDEPALRDLIEFQIENGTDGIVPCGTTGESATLSHEEHDRVIEITIDAVRKRVPVIAGTGSNSTVEAMRLTKHAHEAGADGVLVVAPYYNRPTQEGLYQHYKALAESVPIPIIPYNIPSRTGVNILPETVARLAKISNIVGIKE 161          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_PSEAE (Dihydrodipicolinate synthase OS=Pseudomonas aeruginosa GN=dapA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.226e-24
Identity = 57/157 (36.31%), Postives = 86/157 (54.78%), Query Frame = 2
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            + A+ TP+   GR D ++   LV+  +  G   ++  GTTGE   +  +EHI +I   V+     + VI  TG+NSTREA+  TE   + G  A L + PYY K + EG+  HF  +      P I+YNVP RT  D+ P  +  +++ PN+ G+KE
Sbjct:    6 MVALVTPFDAQGRLDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAVAIPQILYNVPGRTSCDMLPETVERLSKVPNIIGIKE 162          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_ACICJ (Dihydrodipicolinate synthase OS=Acidiphilium cryptum (strain JF-5) GN=dapA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.226e-24
Identity = 62/157 (39.49%), Postives = 88/157 (56.05%), Query Frame = 2
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVL-SMG-PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            + A+ TP   DGR D  A +  +  QI  G  G++  GTTGE   +S DEH  ++  TV      V VI   GSN+TREAI   +   +VG    L + PYY K + +GL+ HF +V  ++G P IIYN+P R+  D+    +  +AQ PN+ GVK+
Sbjct:    6 LVALVTPMHEDGRIDEAALERFIEWQIAEGTNGLVPVGTTGESPTLSHDEHKRVVEITVEVARKRVPVIAGAGSNATREAIGLAKHAESVGADGVLVVTPYYNKPTQDGLLRHFTAVADAIGIPLIIYNIPPRSVIDMSVATMARLAQHPNIVGVKD 162          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_SHEON (Dihydrodipicolinate synthase OS=Shewanella oneidensis GN=dapA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.213e-24
Identity = 57/157 (36.31%), Postives = 86/157 (54.78%), Query Frame = 2
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            I A+ TP   DG  D  + + LV   I  G + ++  GTTGE   +  +EH+ ++  TV      + VIG  G+N+T EAI  T+    VG+ A L + PYY K + +GL++H+ +V +    P I+YNVP RT  D+ P  +  +    N+ GVKE
Sbjct:    6 IVALITPMNSDGSVDFASLERLVEFHIDQGTDAIVAVGTTGESATLPMNEHVTVVAQTVKFAAGRIPVIGGNGANATAEAIELTKSLSKVGVAAMLGVTPYYNKPTPKGLVAHYKAVAASTDIPQILYNVPGRTAVDMKPETVAELVSVSNIIGVKE 162          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_PROM2 (Dihydrodipicolinate synthase OS=Prochlorococcus marinus (strain MIT 9215) GN=dapA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.213e-24
Identity = 60/159 (37.74%), Postives = 87/159 (54.72%), Query Frame = 2
Query:  263 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 730
            R++TA+ TP+  +G  D E    L N    NG++G+++ GTTGE   +SW E   L         +S KVI  TGSNST EAI AT + +  G   AL + PYY K   EGL +HF S+ +     P ++YN+P RTG ++ P  +  +    N+  +K
Sbjct:   14 RILTAMVTPFNENGDVDYELAIKLSNYLFENGSDGIVLCGTTGESPTLSWSEQHDLFTAVKGSLDSSCKVIVGTGSNSTIEAIEATRKAYESGADGALVVVPYYNKPPQEGLYTHFSSIANSAKDLPLMLYNIPGRTGCNLLPDTVKKLMDFSNILSIK 172          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_XANAC (Dihydrodipicolinate synthase OS=Xanthomonas axonopodis pv. citri GN=dapA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.502e-24
Identity = 58/158 (36.71%), Postives = 89/158 (56.33%), Query Frame = 2
Query:  266 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            +ITA+ TP+ PDG  DL+A+  L+  Q+  G +G++V G+TGE   +S DE+  L+          V V+  TG + T + I  T +  A+G   AL + P Y + +  GL +HF +V   G  P ++YNVP RTG D+ P  +  +   PN+ G+KE
Sbjct:    6 IITALATPFGPDGALDLDAWRRLLEQQLHGGVQGLVVAGSTGEAAALSDDEYDTLLRAAAAQVAGRVPVLAGTGLSGTAKTIAQTRRAAALGAQYALVVTPPYVRPTQAGLKAHFLAVADEGGLPVVLYNVPGRTGCDLLPETVAELVGHPNIVGIKE 163          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_SHESA (Dihydrodipicolinate synthase OS=Shewanella sp. (strain ANA-3) GN=dapA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.502e-24
Identity = 57/157 (36.31%), Postives = 86/157 (54.78%), Query Frame = 2
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            I A+ TP   DG  D  + + LV   I  G + ++  GTTGE   +  +EH+ ++  TV      + VIG  G+N+T EAI  T+    VG+ A L + PYY K + +GL++H+ +V +    P I+YNVP RT  D+ P  +  +    N+ GVKE
Sbjct:    6 IVALITPMNSDGSVDFASLERLVEFHIDQGTDAIVAVGTTGESATLPMNEHVTVVAQTVKFAAGRIPVIGGNGANATSEAIELTKSLSKVGVAAMLGVTPYYNKPTPKGLVAHYKAVAASTDIPQILYNVPGRTAVDMKPETVAELVAVSNIIGVKE 162          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_PELCD (Dihydrodipicolinate synthase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=dapA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.502e-24
Identity = 60/157 (38.22%), Postives = 86/157 (54.78%), Query Frame = 2
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS--MGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            + AI TP+  +GRFD E +  L++ QI NG + ++  GTTGE   +   EH  +I   +      V V+  TGSN+T EAI  T     +G   AL I+PYY K S EG+  HF ++      P ++YNVP RTG ++       +A  PN+ G+KE
Sbjct:    6 MVAIITPFDREGRFDEETFRKLIDFQIENGTDVIVPCGTTGESATLDHAEHKKVIKTCIEQVNKRVPVLAGTGSNATSEAIELTRDAKKMGADGALLISPYYNKPSQEGVYRHFKAIADNVALPQVLYNVPGRTGMNMTAATTIRLASHPNVVGIKE 162          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_HALHL (Dihydrodipicolinate synthase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=dapA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.502e-24
Identity = 57/143 (39.86%), Postives = 80/143 (55.94%), Query Frame = 2
Query:  311 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            D +A   LV   +  G++ ++  GTTGE   + ++EH  +I  TV      + VIG TG+NST EAI  T      G  AAL + PYY K + EGL+ HF ++      P I+YNVP RTG D+ P  +  +A  PN+ G+KE
Sbjct:   29 DEKALKQLVEYHVEQGSDAIVAVGTTGESATLDYEEHRDVIRATVEAAAGRIPVIGGTGANSTWEAIELTRSAMEAGCDAALLVVPYYNKPTQEGLVQHFSAIAEAVPIPQILYNVPGRTGCDMLPETVERLADLPNVVGLKE 171          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA1_BACHD (Dihydrodipicolinate synthase 1 OS=Bacillus halodurans GN=dapA1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.502e-24
Identity = 57/159 (35.85%), Postives = 91/159 (57.23%), Query Frame = 2
Query:  263 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            R++TA+ TP+    + +LEA   LVN  I NG++ ++VGGTTGE   ++ DE + L    V   G  V VI  TGSN+TR +I  +++   +G+   + + PYY K S EGL  HF ++      P ++YN+P R+G ++       +A+  N+  +KE
Sbjct:    5 RIVTAMVTPFNEQDQVNLEATCQLVNELIANGSDALVVGGTTGESPTLTTDEKMALFHTVVEAAGGRVPVIAGTGSNNTRASIELSKKVEDLGVDGIMLVTPYYNKPSQEGLFQHFKAISESTSLPIMLYNIPGRSGVNLDAETTLRLAELRNIVSIKE 163          
The following BLAST results are available for this feature:
BLAST of FC869293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 490
Match NameE-valueIdentityDescription
DAPA_SYNAS3.226e-2439.49Dihydrodipicolinate synthase OS=Syntrophus aciditr... [more]
DAPA_PSEAE3.226e-2436.31Dihydrodipicolinate synthase OS=Pseudomonas aerugi... [more]
DAPA_ACICJ3.226e-2439.49Dihydrodipicolinate synthase OS=Acidiphilium crypt... [more]
DAPA_SHEON4.213e-2436.31Dihydrodipicolinate synthase OS=Shewanella oneiden... [more]
DAPA_PROM24.213e-2437.74Dihydrodipicolinate synthase OS=Prochlorococcus ma... [more]
DAPA_XANAC5.502e-2436.71Dihydrodipicolinate synthase OS=Xanthomonas axonop... [more]
DAPA_SHESA5.502e-2436.31Dihydrodipicolinate synthase OS=Shewanella sp. (st... [more]
DAPA_PELCD5.502e-2438.22Dihydrodipicolinate synthase OS=Pelobacter carbino... [more]
DAPA_HALHL5.502e-2439.86Dihydrodipicolinate synthase OS=Halorhodospira hal... [more]
DAPA1_BACHD5.502e-2435.85Dihydrodipicolinate synthase 1 OS=Bacillus halodur... [more]

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Properties
Property NameValue
Genbank descriptionC31010F06EF AbioticL1 Citrus clementina cDNA clone C31010F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869293 ID=FC869293; Name=FC869293; organism=Citrus clementina; type=EST; length=735bp
TGGCCGGAGAAAGTGTGTGCACTGACCTCCCGAGCCTTCGGAGACTTGAC
TGCCTAAAACTGAGAAGAAAAGGAAAGAGGAAATGGTTCACTTGAATGCG
TGCGAGTTGAACCTCAGTAACTGCGGACCCGTCTCTGTCTCTTGCACCGG
GAAAAACCGGAAATGGAGACCCCCTCAAGCAGCTATAATTCCCAATTACC
ATCTTCCAATGCGTAGTTTTGAGGTTAAAAACAGGACATCTGCAGAGGAT
ATAAAGGCACTTAGATTGATAACTGCCATCAAAACGCCATATCTACCAGA
TGGCAGATTTGATCTTGAAGCTTATGATGACCTAGTGAATATGCAGATCG
TAAATGGTGCTGAAGGTATGATTGTTGGTGGCACAACTGGTGAAGGCCAA
CTCATGAGCTGGGATGAACATATAATGCTTATTGGTCACACAGTGAACTG
CTTTGGCGCCTCAGTAAAGGTAATTGGAAATACTGGAAGCAACTCCACCA
GGGAAGCAATTCATGCTACTGAACAAGGTTTTGCAGTTGGTATGCATGCA
GCACTACACATAAATCCTTACTATGGCAAAACTTCCTTGGAGGGCTTGAT
TTCTCACTTTGATAGTGTGTTGTCCATGGGCCCCACCATTATATACAATG
TGCCGTCACGAACTGGTCAAGATATTCCTCCGCGTGTGATTCACACAATG
GCACAGAGTCCGAACCTGGCTGGTGTCAAGGAATG
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