FC869293

Overview
NameFC869293
Unique NameFC869293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_SHESR (Dihydrodipicolinate synthase OS=Shewanella sp. (strain MR-7) GN=dapA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.186e-24
Identity = 57/157 (36.31%), Postives = 86/157 (54.78%), Query Frame = 2 
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            I A+ TP   DG  D  + + LV   I  G + ++  GTTGE   +  +EH+ ++  TV      + VIG  G+N+T EAI  T+    VG+ A L + PYY K + +GL++H+ +V +    P I+YNVP RT  D+ P  +  +    N+ GVKE
Sbjct:    6 IVALITPMNSDGSVDFASLERLVEFHIDQGTDAIVAVGTTGESATLPMNEHVTVVAQTVKFAAGRIPVIGGNGANATSEAIELTKSLSKVGVAAMLGVTPYYNKPTPKGLVAHYKAVAASTDIPQILYNVPGRTAVDMKPETVAELVGVSNIIGVKE 162
[Close]
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_SHESM (Dihydrodipicolinate synthase OS=Shewanella sp. (strain MR-4) GN=dapA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.186e-24
Identity = 57/157 (36.31%), Postives = 86/157 (54.78%), Query Frame = 2 
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            I A+ TP   DG  D  + + LV   I  G + ++  GTTGE   +  +EH+ ++  TV      + VIG  G+N+T EAI  T+    VG+ A L + PYY K + +GL++H+ +V +    P I+YNVP RT  D+ P  +  +    N+ GVKE
Sbjct:    6 IVALITPMNSDGSVDFASLERLVEFHIDQGTDAIVAVGTTGESATLPMNEHVTVVAQTVKFAAGRIPVIGGNGANATSEAIELTKSLSKVGVAAMLGVTPYYNKPTPKGLVAHYKAVAASTDIPQILYNVPGRTAVDMKPETVAELVGVSNIIGVKE 162
[Close]
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_SHEB9 (Dihydrodipicolinate synthase OS=Shewanella baltica (strain OS195) GN=dapA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.186e-24
Identity = 58/157 (36.94%), Postives = 85/157 (54.14%), Query Frame = 2 
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            I A+ TP   DG  D  + + LV   I  G + ++  GTTGE   +   EH+ ++  TV      V VIG  G+N+T EA+  T+    VG+ A L + PYY K + +GLI+H+ +V +    P I+YNVP RT  D+ P  +  +    N+ GVKE
Sbjct:    6 IVALITPMNSDGSVDFASLERLVEFHIDQGTDAIVAVGTTGESATLPMSEHVTVVSQTVKFAAGRVPVIGGNGANATSEAVELTKSLSKVGVAAMLGVTPYYNKPTPKGLIAHYKAVAASTDIPQILYNVPGRTAVDMLPETVAELVSVSNIIGVKE 162
[Close]
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_SHEB8 (Dihydrodipicolinate synthase OS=Shewanella baltica (strain OS185) GN=dapA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.186e-24
Identity = 58/157 (36.94%), Postives = 85/157 (54.14%), Query Frame = 2 
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            I A+ TP   DG  D  + + LV   I  G + ++  GTTGE   +   EH+ ++  TV      V VIG  G+N+T EA+  T+    VG+ A L + PYY K + +GLI+H+ +V +    P I+YNVP RT  D+ P  +  +    N+ GVKE
Sbjct:    6 IVALITPMNSDGSVDFASLERLVEFHIDQGTDAIVAVGTTGESATLPMSEHVTVVSQTVKFAAGRVPVIGGNGANATSEAVELTKSLSKVGVAAMLGVTPYYNKPTPKGLIAHYKAVAASTDIPQILYNVPGRTAVDMLPETVAELVSVSNIIGVKE 162
[Close]
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_SHEB5 (Dihydrodipicolinate synthase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=dapA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.186e-24
Identity = 58/157 (36.94%), Postives = 85/157 (54.14%), Query Frame = 2 
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            I A+ TP   DG  D  + + LV   I  G + ++  GTTGE   +   EH+ ++  TV      V VIG  G+N+T EA+  T+    VG+ A L + PYY K + +GLI+H+ +V +    P I+YNVP RT  D+ P  +  +    N+ GVKE
Sbjct:    6 IVALITPMNSDGSVDFASLERLVEFHIDQGTDAIVAVGTTGESATLPMSEHVTVVSQTVKFAAGRVPVIGGNGANATSEAVELTKSLSKVGVAAMLGVTPYYNKPTPKGLIAHYKAVAASTDIPQILYNVPGRTAVDMLPETVAELVSVSNIIGVKE 162
[Close]
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_SHEB2 (Dihydrodipicolinate synthase OS=Shewanella baltica (strain OS223) GN=dapA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.186e-24
Identity = 58/157 (36.94%), Postives = 85/157 (54.14%), Query Frame = 2 
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            I A+ TP   DG  D  + + LV   I  G + ++  GTTGE   +   EH+ ++  TV      V VIG  G+N+T EA+  T+    VG+ A L + PYY K + +GLI+H+ +V +    P I+YNVP RT  D+ P  +  +    N+ GVKE
Sbjct:    6 IVALITPMNSDGSVDFASLERLVEFHIDQGTDAIVAVGTTGESATLPMSEHVTVVSQTVKFAAGRVPVIGGNGANATSEAVELTKSLSKVGVAAMLGVTPYYNKPTPKGLIAHYKAVAASTDIPQILYNVPGRTAVDMLPETVAELVSVSNIIGVKE 162
[Close]
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_LAWIP (Dihydrodipicolinate synthase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=dapA PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.186e-24
Identity = 59/158 (37.34%), Postives = 89/158 (56.33%), Query Frame = 2 
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQS-PNLAGVKE 733
            ITA+ TP+   G  DLE Y +++  QI  G  G++  GTTGE   ++++E+ +LI   V    + V VI   GSN T +AI  T+    +G    LH+ PYY K + EGL  HF ++ S    P ++YNVP RTG ++ P  +  + Q  P + G+K+
Sbjct:   10 ITALVTPF-KKGEIDLECYREIIEWQIEQGINGLVSCGTTGESATLTYEEYKLLIKACVEQTKSRVPVIAGAGSNDTAKAIQLTKIAKELGADGVLHVTPYYNKPTQEGLFQHFKTIASQESIPILLYNVPGRTGCNLLPETVARIVQDIPEVVGIKD 166
[Close]
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_LACCB (Dihydrodipicolinate synthase OS=Lactobacillus casei (strain BL23) GN=dapA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.186e-24
Identity = 62/159 (38.99%), Postives = 87/159 (54.72%), Query Frame = 2 
Query:  266 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTRE-AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            LITAI TP+      D      LV+  I  G +G +VG TTGEG  +S  E I L     +       VI N+GSN+T+E A    E G   G+ A L + PYY K    G+I+H+ +V +    P +IYN+P RTG D+ P  + T+AQ+P + G+K+
Sbjct:    6 LITAIVTPFNDRDEIDYGVMQRLVDHLIAEGTDGFVVGATTGEGPTLSHPEKITLYTRFADMVHGRALVIANSGSNNTKETAAFTHEVGGIAGIDATLVVVPYYNKPDQNGMIAHYTAVAAAAQKPIVIYNIPGRTGVDMLPATVATLAQNPMIQGIKQ 164
[Close]
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_LACC3 (Dihydrodipicolinate synthase OS=Lactobacillus casei (strain ATCC 334) GN=dapA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.186e-24
Identity = 62/159 (38.99%), Postives = 87/159 (54.72%), Query Frame = 2 
Query:  266 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTRE-AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            LITAI TP+      D      LV+  I  G +G +VG TTGEG  +S  E I L     +       VI N+GSN+T+E A    E G   G+ A L + PYY K    G+I+H+ +V +    P +IYN+P RTG D+ P  + T+AQ+P + G+K+
Sbjct:    6 LITAIVTPFNDRDEIDYGVMQRLVDHLIAEGTDGFVVGATTGEGPTLSHPEKITLYTRFADMVHGRALVIANSGSNNTKETAAFTHEVGGIAGIDATLVVVPYYNKPDQNGMIAHYTAVAAAAQKPIVIYNIPGRTGVDMLPATVATLAQNPMIQGIKQ 164
[Close]
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_IDILO (Dihydrodipicolinate synthase OS=Idiomarina loihiensis GN=dapA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.186e-24
Identity = 56/157 (35.67%), Postives = 85/157 (54.14%), Query Frame = 2 
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            I A+ TP+   G  D    + LVN     G + ++  GTTGE   ++ +EHI ++   V      + +I   GSNST EA+  TE+    G+   L++ PYY K SL GLI+H+ +       P I+YNVP RT  D+ P ++  +A+  N+ G+KE
Sbjct:    6 IVALVTPFTKYGNVDYSELEFLVNKHCEAGTDAIVAVGTTGESTTLTHEEHIAVVNAMVELSAGRIDIIAGNGSNSTSEAVQLTEKMTQAGVSGFLNVTPYYNKPSLAGLIAHYQACADATDKPQILYNVPGRTSLDMTPDMVEQLAKIDNVIGIKE 162
The following BLAST results are available for this feature:
BLAST of FC869293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 490
Match NameE-valueIdentityDescription
DAPA_SHESR7.186e-2436.31Dihydrodipicolinate synthase OS=Shewanella sp. (st... [more]
DAPA_SHESM7.186e-2436.31Dihydrodipicolinate synthase OS=Shewanella sp. (st... [more]
DAPA_SHEB97.186e-2436.94Dihydrodipicolinate synthase OS=Shewanella baltica... [more]
DAPA_SHEB87.186e-2436.94Dihydrodipicolinate synthase OS=Shewanella baltica... [more]
DAPA_SHEB57.186e-2436.94Dihydrodipicolinate synthase OS=Shewanella baltica... [more]
DAPA_SHEB27.186e-2436.94Dihydrodipicolinate synthase OS=Shewanella baltica... [more]
DAPA_LAWIP7.186e-2437.34Dihydrodipicolinate synthase OS=Lawsonia intracell... [more]
DAPA_LACCB7.186e-2438.99Dihydrodipicolinate synthase OS=Lactobacillus case... [more]
DAPA_LACC37.186e-2438.99Dihydrodipicolinate synthase OS=Lactobacillus case... [more]
DAPA_IDILO7.186e-2435.67Dihydrodipicolinate synthase OS=Idiomarina loihien... [more]

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Properties
Property NameValue
Genbank descriptionC31010F06EF AbioticL1 Citrus clementina cDNA clone C31010F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869293 ID=FC869293; Name=FC869293; organism=Citrus clementina; type=EST; length=735bp
TGGCCGGAGAAAGTGTGTGCACTGACCTCCCGAGCCTTCGGAGACTTGAC
TGCCTAAAACTGAGAAGAAAAGGAAAGAGGAAATGGTTCACTTGAATGCG
TGCGAGTTGAACCTCAGTAACTGCGGACCCGTCTCTGTCTCTTGCACCGG
GAAAAACCGGAAATGGAGACCCCCTCAAGCAGCTATAATTCCCAATTACC
ATCTTCCAATGCGTAGTTTTGAGGTTAAAAACAGGACATCTGCAGAGGAT
ATAAAGGCACTTAGATTGATAACTGCCATCAAAACGCCATATCTACCAGA
TGGCAGATTTGATCTTGAAGCTTATGATGACCTAGTGAATATGCAGATCG
TAAATGGTGCTGAAGGTATGATTGTTGGTGGCACAACTGGTGAAGGCCAA
CTCATGAGCTGGGATGAACATATAATGCTTATTGGTCACACAGTGAACTG
CTTTGGCGCCTCAGTAAAGGTAATTGGAAATACTGGAAGCAACTCCACCA
GGGAAGCAATTCATGCTACTGAACAAGGTTTTGCAGTTGGTATGCATGCA
GCACTACACATAAATCCTTACTATGGCAAAACTTCCTTGGAGGGCTTGAT
TTCTCACTTTGATAGTGTGTTGTCCATGGGCCCCACCATTATATACAATG
TGCCGTCACGAACTGGTCAAGATATTCCTCCGCGTGTGATTCACACAATG
GCACAGAGTCCGAACCTGGCTGGTGTCAAGGAATG
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