FC869293

Overview
NameFC869293
Unique NameFC869293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_GEOUR (Dihydrodipicolinate synthase OS=Geobacter uraniireducens (strain Rf4) GN=dapA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.186e-24
Identity = 62/157 (39.49%), Postives = 86/157 (54.78%), Query Frame = 2
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            I AI TP+  +G  D E   +LV  QI NG + ++  GTTGE   + ++EH  +I   V      V VI  TGSNST+EAI  T     +G   AL + PYY K + EGL  H+ +V      P I+YNVP RTG ++ P  +  +A+  N+  +KE
Sbjct:    6 IVAIVTPF-KNGAVDEEKLRELVEFQIENGTDAIVPCGTTGESSTLDYEEHDRVIEIVVEQVKKRVPVIAGTGSNSTKEAIEMTSHAKTLGADGALLVTPYYNKPTQEGLFLHYKAVADAVALPQILYNVPGRTGVNLLPETVARLAEHKNIVAIKE 161          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_DECAR (Dihydrodipicolinate synthase OS=Dechloromonas aromatica (strain RCB) GN=dapA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.186e-24
Identity = 61/157 (38.85%), Postives = 87/157 (55.41%), Query Frame = 2
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            I AI TP   DG  DL ++ +L++  +  G + ++V GTTGE   ++ +EH  LI   V+     + VI  TG+NST EAI  TE     G + AL + PYY K + EGL  HF ++      P I+YNVP RT  D+    I  +A+ P + GVK+
Sbjct:    6 IVAIVTPMHEDGSLDLNSFRNLLDFHVQEGTDAIVVVGTTGESPTVNVEEHCELIKIAVDHVAGRIPVIAGTGANSTAEAIELTEFAKKAGANMALSVVPYYNKPTQEGLYRHFKAIAEAVELPVILYNVPGRTVADMSNDTILRLAEVPGIVGVKD 162          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_SULSY (Dihydrodipicolinate synthase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=dapA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.386e-24
Identity = 59/158 (37.34%), Postives = 88/158 (55.70%), Query Frame = 2
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTM-AQSPNLAGVKE 733
            + A+ TP+  DG  D +    L+   I NG + ++V GTTGE   ++++EH +LI   V      + +I  TG+NST EAI  T+    VG  A+L + PYY K + EG+  HF ++      P I+YN+PSRTG D+ P     +    PN+ G+KE
Sbjct:    6 VVALITPF-KDGTLDRQGLKRLIEFHIENGTDAIVVAGTTGESPTLTYEEHELLIELAVGYSNKRIPIIAGTGANSTHEAITLTKFAEKVGADASLQVVPYYNKPTQEGIYQHFKAIAEETNIPLILYNIPSRTGVDMLPETFARLYGDFPNVIGIKE 162          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_RALSO (Dihydrodipicolinate synthase OS=Ralstonia solanacearum GN=dapA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.386e-24
Identity = 62/157 (39.49%), Postives = 84/157 (53.50%), Query Frame = 2
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            + AI TP   DG  D  +   L++  I  G +G+++ GT+GE   +S DEH  LI  TV      + VI  TG NST EA+  T    +VG  A+L + PYY K + EG+  HF  V      P I+YNVP RT  D+    +  +AQ P + GVKE
Sbjct:    8 LVAIVTPMHEDGSLDFPSLRSLIDWHIAEGTDGIVIVGTSGESPTVSVDEHRELIRVTVEQVNKRIPVIAGTGGNSTTEAVELTAYAKSVGADASLQVVPYYNKPTQEGMYLHFRKVAESVDLPVILYNVPGRTVADMSVDTMLRLAQVPGVMGVKE 164          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_NITOC (Dihydrodipicolinate synthase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=dapA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.386e-24
Identity = 60/157 (38.22%), Postives = 83/157 (52.87%), Query Frame = 2
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            + A+ TP  PDG  D E    LV+  I NG + ++  GTTGE   +   EHI +I   V+     + VI  TG+NSTREA   T      G  A L + PYY + + EGL  HF ++      P I+YNVP+RT  D+ P  +  +A   N+ G+KE
Sbjct:    6 MVALVTPMHPDGALDWEGLRRLVDFHIENGTDAIVTVGTTGESPTLEVKEHIRVIREVVDQAQGRLPVIAGTGANSTREAEELTRAALEAGADACLLVVPYYNRPTQEGLYLHFKAIAEAVPIPQILYNVPTRTACDLLPETVARLADISNIVGIKE 162          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_LACF3 (Dihydrodipicolinate synthase OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=dapA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.386e-24
Identity = 63/159 (39.62%), Postives = 87/159 (54.72%), Query Frame = 2
Query:  266 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAV-GMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            L+TAI TP+  +G  D  A D L    +  G  G +VGGTTGE   +S DE I L  H        V VI  TGSN+T E I  T +   + G+  AL + P Y K +  G+++HF +V      P IIYN+P RTG  +    + T+A+ PN+AG+K+
Sbjct:    9 LLTAIVTPFTDEGTIDYPALDQLTEHLLQAGNNGFVVGGTTGETPTLSHDEKIELYTHFGRLIAGRVPVIAGTGSNNTAETIAFTNEVAQIEGIDYALVVVPPYNKPNQRGMLAHFTAVADAVELPLIIYNIPGRTGVKMETSTVLTLAEHPNIAGIKQ 167          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_PSEA6 (Dihydrodipicolinate synthase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=dapA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.226e-23
Identity = 56/155 (36.13%), Postives = 85/155 (54.84%), Query Frame = 2
Query:  275 AIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            A+ TP    G  D  +   LV+  I NG+ G+I  GTTGE   + +DEHI ++   V      + VI  +G+NST EAI  +EQ    G+   L + PYY K   +G+++HF++V      P ++YNVP RT  D+ P  +  +A  P + G+K+
Sbjct:    8 ALITPMYQSGEIDYPSLKKLVDFHIANGSHGLIAVGTTGESATLPFDEHIEVVKRMVEFADKKIPVIAGSGANSTAEAIFLSEQMAGTGIDGFLSVVPYYNKPQQKGMVAHFNAVADATDLPVLLYNVPGRTVADMLPDTVAELATHPKIVGLKD 162          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_PROM0 (Dihydrodipicolinate synthase OS=Prochlorococcus marinus (strain MIT 9301) GN=dapA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.226e-23
Identity = 59/159 (37.11%), Postives = 85/159 (53.46%), Query Frame = 2
Query:  263 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG---PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 730
            R++TA+ TP+  +G  D E    L N    NG++G+++ GTTGE   +SW E   L         AS KVI  TGSN T EA+ AT++ +  G   AL + PYY K   EGL  HF S+       P ++YN+P RTG ++ P  +  +    N+  +K
Sbjct:   15 RILTAMVTPFTENGDVDYELAIKLSNYLFENGSDGIVLCGTTGESPTLSWAEQHELFIAVKGSLDASCKVIVGTGSNCTSEAVEATKKAYDSGADGALVVVPYYNKPPQEGLYKHFSSIAKSAKDLPLMLYNIPGRTGCNLLPDTVKKLMDFSNILSIK 173          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_HAEDU (Dihydrodipicolinate synthase OS=Haemophilus ducreyi GN=dapA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.226e-23
Identity = 60/157 (38.22%), Postives = 89/157 (56.69%), Query Frame = 2
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            I A+ TP +  G  + +   +LV   I  G+ G++  GTTGE   +S DEH+ +I  TV      + +I  +GSN+T EA+  T+    VG+   L + PYY K + EGL  H+ ++      P I+YNVPSRTG D+ P  I  +++ PN+ GVKE
Sbjct:   12 IVALLTP-MTHGEVNYQEIKNLVEYHIQAGSHGIVAMGTTGESTTLSIDEHVKVIKKTVEFADGRIPIIAGSGSNATSEAVTITKLLNGVGVVGCLSVVPYYNKPTQEGLYLHYKAIAESTELPQILYNVPSRTGCDLKPETIGRLSEIPNIIGVKE 167          
BLAST of FC869293 vs. ExPASy Swiss-Prot
Match: DAPA_SHESW (Dihydrodipicolinate synthase OS=Shewanella sp. (strain W3-18-1) GN=dapA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.601e-23
Identity = 57/157 (36.31%), Postives = 84/157 (53.50%), Query Frame = 2
Query:  269 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG--PTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 733
            I A+ TP   DG  D  + + LV   I  G + ++  GTTGE   +   EH+ ++  TV      + VIG  G+N+T EAI  T+    VG+   L + PYY K + +GLI+H+ +V +    P I+YNVP RT  D+ P  +  +    N+ GVKE
Sbjct:    6 IVALITPMNSDGSIDFASLERLVEFHIDQGTDAIVAVGTTGESATLPMSEHVTVVAQTVKFAAGRIPVIGGNGANATAEAIELTKSLSKVGVAGMLGVTPYYNKPTPKGLIAHYKAVAASTDIPQILYNVPGRTAVDMQPETVAELVGVSNIIGVKE 162          
The following BLAST results are available for this feature:
BLAST of FC869293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 490
Match NameE-valueIdentityDescription
DAPA_GEOUR7.186e-2439.49Dihydrodipicolinate synthase OS=Geobacter uraniire... [more]
DAPA_DECAR7.186e-2438.85Dihydrodipicolinate synthase OS=Dechloromonas arom... [more]
DAPA_SULSY9.386e-2437.34Dihydrodipicolinate synthase OS=Sulfurihydrogenibi... [more]
DAPA_RALSO9.386e-2439.49Dihydrodipicolinate synthase OS=Ralstonia solanace... [more]
DAPA_NITOC9.386e-2438.22Dihydrodipicolinate synthase OS=Nitrosococcus ocea... [more]
DAPA_LACF39.386e-2439.62Dihydrodipicolinate synthase OS=Lactobacillus ferm... [more]
DAPA_PSEA61.226e-2336.13Dihydrodipicolinate synthase OS=Pseudoalteromonas ... [more]
DAPA_PROM01.226e-2337.11Dihydrodipicolinate synthase OS=Prochlorococcus ma... [more]
DAPA_HAEDU1.226e-2338.22Dihydrodipicolinate synthase OS=Haemophilus ducrey... [more]
DAPA_SHESW1.601e-2336.31Dihydrodipicolinate synthase OS=Shewanella sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionC31010F06EF AbioticL1 Citrus clementina cDNA clone C31010F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869293 ID=FC869293; Name=FC869293; organism=Citrus clementina; type=EST; length=735bp
TGGCCGGAGAAAGTGTGTGCACTGACCTCCCGAGCCTTCGGAGACTTGAC
TGCCTAAAACTGAGAAGAAAAGGAAAGAGGAAATGGTTCACTTGAATGCG
TGCGAGTTGAACCTCAGTAACTGCGGACCCGTCTCTGTCTCTTGCACCGG
GAAAAACCGGAAATGGAGACCCCCTCAAGCAGCTATAATTCCCAATTACC
ATCTTCCAATGCGTAGTTTTGAGGTTAAAAACAGGACATCTGCAGAGGAT
ATAAAGGCACTTAGATTGATAACTGCCATCAAAACGCCATATCTACCAGA
TGGCAGATTTGATCTTGAAGCTTATGATGACCTAGTGAATATGCAGATCG
TAAATGGTGCTGAAGGTATGATTGTTGGTGGCACAACTGGTGAAGGCCAA
CTCATGAGCTGGGATGAACATATAATGCTTATTGGTCACACAGTGAACTG
CTTTGGCGCCTCAGTAAAGGTAATTGGAAATACTGGAAGCAACTCCACCA
GGGAAGCAATTCATGCTACTGAACAAGGTTTTGCAGTTGGTATGCATGCA
GCACTACACATAAATCCTTACTATGGCAAAACTTCCTTGGAGGGCTTGAT
TTCTCACTTTGATAGTGTGTTGTCCATGGGCCCCACCATTATATACAATG
TGCCGTCACGAACTGGTCAAGATATTCCTCCGCGTGTGATTCACACAATG
GCACAGAGTCCGAACCTGGCTGGTGTCAAGGAATG
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