FC869298

Overview
NameFC869298
Unique NameFC869298
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig108 contig Ccv1_Contig108:380..1066. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869298 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 3
Query:  489 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEA 656
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEA
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEA 207          
BLAST of FC869298 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 3
Query:  489 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEA 656
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEA
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEA 207          
BLAST of FC869298 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 3
Query:  489 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEA 656
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEA
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEA 56          
BLAST of FC869298 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 3
Query:  489 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEA 656
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEA
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEA 205          
BLAST of FC869298 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 3
Query:  489 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEA 656
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEA
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEA 205          
BLAST of FC869298 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.138e-23
Identity = 52/64 (81.25%), Postives = 55/64 (85.94%), Query Frame = 3
Query:  468 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEA 656
            LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPL    DPEA
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEA 64          
BLAST of FC869298 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.130e-19
Identity = 70/204 (34.31%), Postives = 95/204 (46.57%), Query Frame = 3
Query:   45 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDP 650
            MA+S+   S S VG    LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + +   E  R       +     YPGG+FDPLG + DP
Sbjct:    1 MASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTME---KDPEKKKYPGGAFDPLGFSKDP 181          
BLAST of FC869298 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.189e-18
Identity = 58/154 (37.66%), Postives = 79/154 (51.30%), Query Frame = 3
Query:  195 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLG 635
            PDR  +   F G  PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG
Sbjct:   63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 206          
BLAST of FC869298 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.510e-17
Identity = 61/167 (36.53%), Postives = 82/167 (49.10%), Query Frame = 3
Query:  156 GSKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLG 635
            GS+SV+  +    PDR  +   F G  PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG
Sbjct:   50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 206          
BLAST of FC869298 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.343e-16
Identity = 55/143 (38.46%), Postives = 72/143 (50.35%), Query Frame = 3
Query:  228 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDP 650
            G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + +  VE  R       +     YPGG+FDPLG + DP
Sbjct:   52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDP 182          
The following BLAST results are available for this feature:
BLAST of FC869298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB2F_SOLLC5.724e-2594.64Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC5.724e-2594.64Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC5.724e-2594.64Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC5.724e-2594.64Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC5.724e-2594.64Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_RAPSA9.138e-2381.25Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB121_HORVU6.130e-1934.31Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB12_SOLLC5.189e-1837.66Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY1.510e-1736.53Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB11_SOLLC6.343e-1638.46Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC31010F11EF AbioticL1 Citrus clementina cDNA clone C31010F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869298 ID=FC869298; Name=FC869298; organism=Citrus clementina; type=EST; length=685bp
CACACTCGAACTTCAGAGCTCACAACAACTCTGATCATTGTAAAATGGCA
ACCTCGACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCT
TGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTA
AAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGAC
AGAGTCAAGTACTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGAC
TGGTGAGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTG
ACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGA
TGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCG
CAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAGA
TCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCAC
GCTCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGC
CGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACC
CATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCG
GAGGCTTTGCTGAGCTCAGGTTAAGGAATCAAGAT
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